Gene detail

Detailed information of scaffold236.g11.t1 in Morbakka virulenta

Genomic Location: scaffold236:446763...473545
NR annotation: XP_031563855.1, RNA-binding protein 4.1-like isoform X2 [Actinia tenebrosa]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

scaffold236.g11.t1

AGGGGAGTTTTGGGATAGCATAAATGGAAAACATCCATGAAAAAGAGAATGTTTTTCAGGTGCTGTGAACACAGAGAAGATTTGGAGTGTCGCTGTTTAAGATGTTTCAGATGTCGTTCGAGTCTTCGCGTGTAATTGGGAGTAAATTTACAAAAAACATAAGCTTTGTGATTTGTTAACGACTTTATAAATATTGTGCAGATGATCTGTGTGAAATGGTGGAACTCATCAAATGTTAAATGTTGGGAAAGGATTTGCGGTTTTTAATGATAATTTATGCGCAGATTCTGTTCTCATTGTGGACGATTATGTTTTCCCTGTCAAATTGAACACGAATTGCATGTGTTTCTTCTTTCTGTTCCGGATTTGAAGTTCAGACTTTTTGTTGTTTAACCGTCGGCAGCGCAATCGGAAGAGACAGTATGGCTGAAAACGGCACCGCTGTTAAAAAGGAACCAAATACAGACGTTGATCGTCAAGGTGATCGTTCCGCCAATCTTACAAAAATTTTTATTGGGAGCCTTCCAACGAAGTATGTTGCTAAGGATTTAGAAGACCTGTTCGCAGAGTTTGGGTCTTTAAAGAGGTTTGATATTGTGAAGAACTTCGCTTTTGCGTTCTACTCAAATAAAAAGGCTGCAGAAGCAGCAATAACAGCACTAAATGACACTCCATTTCAAGGTAGCAATATACAAGTCCAGATGGCAAAAAACAAGTTTATGCTCAATGAAAAGGATGCCAACACTTGCTTTGAATGTGGTGGAACAAATCATTGGGCAAAAGACTGCCCATCAAGAACAAGAGGACCCAAGAGGGGTAATCCACCCCAAGCAGGCAACCGCCTTTCTTCAGAGAGACGTCAAGACCGTCGATATTCCGATCAAGAATATGAAAGAGATTATCAACGGGAACCAGGGCGTGAGAGTTATGATCGTGGTGGGTTGCCTCCAATAGGAGCGCTGCCGCCTGCCCGCAGAGAATACGCTACAGGTTACAGAACAAGAAGTAGGAGTCCACCTGGGTATTCATATGATAGAAGATCACCTCTGAGGGAACCTGCCAGAGATCCTTACGCAAGACCCGCAGACCCATATGCTCGGGATGCTAGAGAACCTTATGGACGAGAGCCTTATAACAGGGACTCATATCCTCCACGGGACCCTACTTATGCACCAAGACCTGGAAATTATCTTTCACGTGATGGATACAGCAGAGATCCATACCCAAGTCGAGGCCTCCCGGGAAGGGAATCTTACCCTACTCGTGAAAGCTACCCTTCACGTGAAACGTATGCGAGTAGAGAAGCATACCCCTCAAGGGAAGGATACTCATCAAGAGAGAGTTATCCAGCCAGGGAGGGATATTTGCCCAGAGACAGTTATCCACCAAGGGATACGTATCCGACAAGAGAAGCATACCCAACAAGAGAGGCATATCCAACAAGAGAGGGATATACGCAAAGAGAGGGATATACGCAAAGAGAGGGATACCCAGGAAGAGATCCGTACCCATCCAGAGAGGGATATCCTGCTAGAGATGGGTATTCTGGTCGAGAAAGTTATACTTCAAGGGATCCATATCCAGCCAGGGATACATACGTAGCAAGGGACCCTTATCCAGCCAGAGACAATTACCAACAGAGAGATTCCTATGCAACAAGAGAGTCTTATGCCAGTAGAGATGCCTATCCAGCCGCTAAGGAACCAACAGCAGCTAGCCGAGATTACTACGGTGGTTATGAAAGTGGTGCGAGAAGATATGCTGAAGCACCTCCGCCAGCCGCCAGAGCTCCACCACGAGCCGCTGCCCCACCTGCACGGGCAGGAGCCTACTGAAGAGTTTTGTCGCCGGTACATCCGTACATCATGATCAGCTTTATTTGGTGACCTGTTTACGAATAAAAAGACGCTCTCGTTCGTTGTAGGCTTAACAACGTGGTTCAGACGTACTCCAGCGAACTTCATGTTGACTAATTGTACCGAAATAACTAAATTTGAATTCTGCTGTTACAAAGTTTACTGCGAAAAGTCTTTCAAACTACCAGATAAATTGTTCTTGTCAAAAACGTGTAATACGAAAAGCAAGGAGTCTGGCCTTGAAACAGCTGATCGAATGTATTAAGGGAGCAAGTCGTTACTATGAAGCTACTTTCCGTTGCACTTGCATGCCAAACGGTACCTGTTTGTTTCTCGTTTCCTACTTTAAAAGATGAACAGTTGTAATTTTCCGGCGTGTTctattgactaccgtactgttgactaccgtactatttactGCAGCTTATTTTAGTTTAGTTTGATGTAAGTCGTAAGCGAATTTTTCTCAGCTTAAATAACAAAGGAAGCCCTGTGCACAAGGCTAAAACAAACAATTTCGTAATCTTTACCTGAACTTCTTTTTGAAATTTTTAATGTTTTCAGCGAATTCTTGAAACGTTGATAAACACAACGAAATGCTTGGTTGTCTTCATTTTTTTTGGCTTTTGTGGTTGTGAATTCTGGGACGAAATGTTCCAAATGTTTGTGGTATATAATTTTCTATAAAACGAAGGAAAATATAATCTTCTCCATGTAGCTGTAAAATAACAATAAATATTGGGAGCGCATTGCTTTGGGGCAGTTATTTAGTACTGCAAGCACCGAGAGTACACTAGAACTGCCTTGGCATCGTGCGGATTTGTTGACGATGGAAGCTTCTCAGGAACACAGACCGTTGATTTATTTACTTTCAATTAATTCAACATTTAGCCCTACGTATTCTATGTGCGGTACAATTTCTGAGTTACAGAATAACACTGCCACAACATCGCTAGCCAATATTTTGTATTATACATTTTGCAGATGCATATTTTAACTATCTAGTATAGGAAATGTTTACATATATACATACATGTATAGAAAACTGTGTTAATAATTATTTAAACAGCTACCATCTGCCTTCCTTGCCATTGGCCCAAACCAATGAAGTCATCAGGTCTGCATCTCTAAATGACAGAGGTAATACCAAGGTAATTCATTTGTTCAGTTGTTTTGAGCTGCACATCCAATACAACATTTACATTTCGTTTCTGTGAAGGTGATGTATGTCATCAACTTTACAGTTTGTCTTTGACTTTGAGGGGTATACTTTTGGCAGTGAGGCAAGAAGGTCAACCCAGTGTATTTGGAGGTAACTGTGACTGCAGTTTTTTCAAAGATTGTACTGTTGGCTGCAGGAACTAAACCGCGGCTGCCACTTTGTGTCAGTGGGATAAAGGTCACATTTTACAGAGGTCTGGTGGGTGACAAAGAATTGTTTAGACCAAATTTCTTGTCGCAGCTTTGAACGTGACCCTCGTTTTTCCACAGGGTAAGCGATATTAAGGTACAGGACCAGCCCTGTCATATTTATATTTTGGCGCTAACTCGGGTAACAGTACTGCAGTGGCACGTAGGCGGGGAAAAGTAGCTGAGTTTACTGGACGATATGACCAAGCAAATTTTACAAGATGTGAACCTGATCTTTAAGAGAAAAGTTTTACCTTGTTGAAAAGTATTCCGTTTATAGATGAAGCATTGATTTGCCATGCAATTTCCAGATGAATGGCTGTAGCAACGAAAAAGCCCATATTTTCCCTGCTTTTAAAAGCTTGAGCCGATATGCTCTTGCAGTGTTCTGTTGGACGCAGTTGTTTGGTGGCCACATCACGTTTTGCTTCATTGACGTGAATTACCTGAACCATTAAGAAGTATTTTGATACTGCAAACTTACTTTGGAAGGTAGTCACTGCACGCTCTCGTTATGTCCAAAGAAAGTGGAAGGATCGCAAATTAGTGGAGAATGCGTTTAAACTGAGCCAAGGCTTGACCAGTGGTATGTCTCGAAAAATTATTATTTTCAGTTTGTTTACTTTGTTTTATTAATAATATCTTTAACTTTCTGAAGTTTGTTACCGGTATAGGTTCAAAACGCAGATGTTACACCCAATCCTAGCCAGTTAAACTTTGAGTCATATACGTCTTCCTGATCGTTAAGTTAAAAAAGAGGACGATTTCACTGAGTGTAAATTCTACCCAGTAAATATAGATGATTTGATCGATTATGTGAAGTTGAGGAGGAGGCAATTGCCAACCAGACCAAACATGTAAAAGCGAGCCTTAAAGTTTATTTAATTTGAAAAAAATTAGTAGAAGTTTGGATTACGGTCGAAAAGCATAAACTAAAACAAAAGTCAAAATAAAAGAAAGTCATTTAGCCAAAAGAAAAGGCATTACAATCAACTTCATTTGAAGTCGAAAGATTGACGGTTGAGGCAAAACTATAATAGTTTTCGCTTCTAACTTGTAGCAAAGGAACCTTGTTTTGAAATAAGATTGTTTGAATTCAAATTTTTAGCTTTCACCGATGTATTTGGCGTGTGCGACTTAAATCCAAGATGTGCAAGTATGTACATGAACGTGGATTAATACCTCGCTGGGGCCACCCAAAGTTAACACACACTTCCTTTATCATTGCCACATGCAGGGAACAAGAATTGCTTTATTGCTGCAACGGGGGCAGTGCTTTCAAAGCCATCGATTGTCTTCCTCTCTCCTGCAGAATGTTGTAAGAAACGTTACACAGATTT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF00098	zf-CCHC	Zinc knuckle	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48038	RIBONUCLEOPROTEIN RB97D	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan