Gene detail

Detailed information of scaffold24.g167.t1 in Aurelia aurita

Genomic Location: scaffold24:1839078...1848167
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00270 all species →	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR014014 all species →	Domain	RNA helicase, DEAD-box type, Q motif	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR000629 all species →	Conserved_site	ATP-dependent RNA helicase DEAD-box, conserved site	Interproscan
IPR011545 all species →	Domain	DEAD/DEAH box helicase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47958 all species →	ATP-DEPENDENT RNA HELICASE DBP3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003724 all species →	Molecular Function	RNA helicase activity	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0071013 all species →	Cellular Component	catalytic step 2 spliceosome	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13025	EIF4A3, FAL1; ATP-dependent RNA helicase	EC:5.6.2.7	Translation factors	ko03012	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of scaffold24.g167.t1 across 22 RNA-seq samples of Aurelia aurita. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

22Samples

22TPM > 0

19Conditions

430.4Max TPM

298.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
complete polyp	3	3	229.92	241.16
polyp not induced	2	2	356.76	410.30
polyp endoderm from body column	1	1	238.20	238.20
jellyfish bell edge	1	1	388.39	388.39
strobila non-segmented part	1	1	396.49	396.49
polyp 12h induction with 5M2MI +20C	1	1	341.09	341.09
polyp 24h induction with 5M2MI	1	1	359.34	359.34
strobila segments	1	1	413.70	413.70
strobila heads	1	1	430.40	430.40
polyp 24h induction with 5M2MI +20C	1	1	388.10	388.10
jellyfish ropalia	1	1	311.45	311.45
polyp head region	1	1	231.15	231.15
polyp 20h induction with 5M2MI +20C	1	1	278.86	278.86
complete strobila	1	1	231.12	231.12
13 jellyfish ropalia	1	1	223.12	223.12
complete juvenile jellyfish	1	1	235.19	235.19
polyp ectoderm from body column	1	1	108.26	108.26
jellyfish bell edge without ropalia	1	1	236.99	236.99
3 juvenile jellyfish (~7mm in diameter)	1	1	354.55	354.55

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR7992487	complete polyp	complete polyp	polyp	not recorded	SRP164891	241.16
SRR7992486	complete polyp	complete polyp	polyp	not recorded	SRP164891	236.66
SRR7992484	complete polyp	complete polyp	polyp	not recorded	SRP164891	211.95
SRR8090262	polyp not induced	polyp not induced	polyp	not recorded	SRP164891	410.30
SRR8090261	polyp not induced	polyp not induced	polyp	not recorded	SRP164891	303.23
SRR7992468	polyp endoderm from body column	polyp endoderm from body column	polyp	not recorded	SRP164891	238.20
SRR8090258	jellyfish bell edge	jellyfish bell edge	jellyfish	not recorded	SRP164891	388.39
SRR8090265	strobila non-segmented part	strobila non-segmented part	strobila	not recorded	SRP164891	396.49
SRR8090264	polyp 12h induction with 5M2MI +20C	polyp 12h induction with 5M2MI +20C	polyp	not recorded	SRP164891	341.09
SRR8090263	polyp 24h induction with 5M2MI	polyp 24h induction with 5M2MI	polyp	not recorded	SRP164891	359.34
SRR8090260	strobila segments	strobila segments	strobila	not recorded	SRP164891	413.70
SRR8090259	strobila heads	strobila heads	strobila	not recorded	SRP164891	430.40
SRR8090256	polyp 24h induction with 5M2MI +20C	polyp 24h induction with 5M2MI +20C	polyp	not recorded	SRP164891	388.10
SRR8090257	jellyfish ropalia	jellyfish ropalia	jellyfish	not recorded	SRP164891	311.45
SRR7992469	polyp head region	polyp head region	polyp	not recorded	SRP164891	231.15
SRR8090255	polyp 20h induction with 5M2MI +20C	polyp 20h induction with 5M2MI +20C	polyp	not recorded	SRP164891	278.86
SRR7992485	complete strobila	complete strobila	strobila	not recorded	SRP164891	231.12
SRR7992483	13 jellyfish ropalia	13 jellyfish ropalia	juvenile jellyfish	not recorded	SRP164891	223.12
SRR7992482	complete juvenile jellyfish	complete juvenile jellyfish	juvenile jellyfish	not recorded	SRP164891	235.19
SRR7992481	polyp ectoderm from body column	polyp ectoderm from body column	polyp	not recorded	SRP164891	108.26
SRR7992480	jellyfish bell edge without ropalia	jellyfish bell edge without ropalia	juvenile jellyfish	not recorded	SRP164891	236.99
SRR8090266	3 juvenile jellyfish (~7mm in diameter)	3 juvenile jellyfish (~7mm in diameter)	jellyfish	not recorded	SRP164891	354.55

Source: CnidoSite RNA-seq expression matrices (AAURI1_TPM, StringTie quantification over 22 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.