Gene detail

Detailed information of scaffold24.g38.t1 in Morbakka virulenta

Genomic Location: scaffold24:1244770...1267889
NR annotation: XP_028395904.1, uncharacterized protein LOC114519924 [Dendronephthya gigantea]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

scaffold24.g38.t1

ACCATTATATTTTCATCATGTCAAGTTGATGAAATAGAAAATCATCAGAGAGCTTACTTTTTGTAATATTAAGGCCAAGTGGTTTAGGTATTGTATATCAAGGGATTCTTGTAAGGTTTCACTTTTAGTACGGAGAAGAAGCCGTAAGAAATGCTTTCTAAAGATATGTTCCAGATACTTTGGACATTCCTTTTGACACTATCTGCAATATCAAGAGCTGATATTCAAGACATTTGCTCTAATTTAAAAGATGGAGTTTACTTGCATCCGGAAGGAAACAGCAAATATATCCGCTGCTTTCGCCGCCATGGTTTTCAAGTAGACTGTCCAAAGGGTCTTCTTTTTTCTGCCAACAAAGGAATTTGTATGAATCATAGCAAACTTCAAAAAGAAGCACAACCTTGCAATGAATGGAAATGTAAGTTACCAAATTGTCTTTGTGCCTCTACTAATGCACCCGGTAATCTAACCAGAAATGAGATACCACAAATGGTGATGATCACATTTGATGATGCTGTAACATCGTGGAATATGGAAAAATACAGAATGTTGTTTCAGGGACGTAGAAATCCAAACAATTGTACAATATCTGGGACATTTTTTGTCTGCAATAGATTCACAAGCTACAAAGATGTCAACGAATTGTATGAGCAAGGTCATGAAATAGCAGATCATAGTATCACTCATCGAACTCCCACGACTTGGTGGAAACATGCAACCTACAAACAGTGGATGGAAGAAATTGCAGGAGAGAGAAAGTACCTAAAGACATTGGCAAATATTACCCATGTTTATGGATTTCGTGCACCATTCCTACAAATTGGTGGGAATAGACAATTTGCAGTTCTAAAAGATTTAAACTTTCTTTATGATTCCTCTATACCCACAGGAGGTAAACTATATGACCCTCCTCTCTGGCCATACACCTTAGATTATCGTTCACCGCAGGTTGATTTCTGTGACATCCCACCATGTCCGACAGATTCCTTCCCAGGTCTCTGGGAAGTTCCCATGATATCGTATCTGGACAAAGGACATTTCCCATGCGCCATGTATGATGGCTGCGTTTTTCAACCTGAAAACGAGGAAGAAGTATATAATCTCTTTATGAGCAATTTTGAGCGTCATTATCATTCAAACAAAGCTCCTTTTCCGTTATTTGGACATGCTGCATGGTTTGGAAGAGCCGAATACAATTTCAAAGGCTTTCTTCGTTTTGTGGATGAAATATTGAAGAAAAAGGATGTTTACATTGTGAACGTTGCCAAGGTGATTCGTTGGATGCAACATCCAACTCCGCTACAGGATCTTCATAAATTCAACCACTGGCAATGTTAAGAAAATGACAGTTATTTTTGTGCCTTTACTATTTTTTTCGGTGGTTTTTTTCAACTTTAAATGGAGTATTGATTAATGAAATTTTTAGCTTGATCATACTCGGAAATAAATGTATTTTCAATGTTCCTCGACCTTCTGTTGTTATACAAAGTTTAGCAAAACTTGACTGCATTAAAATCTAATGCAAAAGCCTTACATGAGGAAACACACTGTGTAAAACCTATTACAAAACTTAATGTTGTTTTCTCTAAAAAATCATGGATTAGAACTACCGTAAATTTTTCAGATAATTGTTTTGCATCCATAATTAACTTTACTTCAGCTGTATTCTTTAAGAAAGAATTTTATTGAGTTTTTGTGAGGCTTTTGTCAACGTCGTTGtcgtcttcgtcggaagtactatggccatagtggatccaggcgagctcgtcatggtcgatctcacatcctgtcttagatcttgcaaagattgatattgtcagcatcaggatattcttgcaagttgttaaaatgacttcaaatgttccttaggcgagcttttggtcgttccttataatgtttccagggaaccactgatcttccTGATCACTGATACTTACATGACTAATGTTTGCTGTATGGTATTCCGCATGTCTTGTCCACAAATAAAATGCCACACTGTGAGACTTTTTGTATCATATATAGATATCATTGCCACGTTTTCAATACCATGTAGTTTGTACTCTTTAACAATCTAGCCAGCTCATTCCTCTACTTTAGGGGTCGACATACTTTTGAACACCAAGGGCCAGACAGCTATGGCAGTGTCTGGAGGAGGGCCATATAATTAAACCTTTTACATGTAAGTGCAAGTTATAAGTAAAATAGCAAATAAAGA

Protein

Uniprot

Uniprot term	Description
H9JW43	Chitin deacetylase 8 OS=Bombyx mori OX=7091 GN=CDA8 PE=1 SV=2
H9JW44	Chitin deacetylase 7 OS=Bombyx mori OX=7091 GN=CDA7 PE=1 SV=1
H9J9M0	Chitin deacetylase 1 OS=Bombyx mori OX=7091 GN=CDA1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01522	Polysacc_deac_1	Polysaccharide deacetylase	Family	Interproscan
PF01607	CBM_14	Chitin binding Peritrophin-A domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR052740	Family	Carbohydrate Esterase 4	Interproscan
IPR002557	Domain	Chitin binding domain	Interproscan
IPR002509	Domain	NodB homology domain	Interproscan
IPR011330	Homologous_superfamily	Glycoside hydrolase/deacetylase, beta/alpha-barrel	Interproscan
IPR036508	Homologous_superfamily	Chitin binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45985	-	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005576	Cellular Component	extracellular region	Interproscan
GO:0008061	Molecular Function	chitin binding	Interproscan
GO:0005975	Biological Process	carbohydrate metabolic process	Interproscan
GO:0016810	Molecular Function	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14464	FUT-1, FucTC; alpha-1,3-fucosyltransferase	EC:2.4.1.-	Various types of N-glycan biosynthesis	ko00513	deepkoala