Gene detail

Detailed information of scaffold24.g62.t1 in Aurelia aurita

Genomic Location: scaffold24:674295...680165
NR annotation: no NCBI-NR hit recorded
Species abbreviation AAURI1 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold24.g62.t1

attaatgatttattgatgagcaaacggcaaaagtacttgtttgacaagatactcctttattttgaaaatacaattttcgtatcaccaacattttatttcttgtcatttttccccagatagaagtccgctgtttggccatttctccacaacacttctcggcttaccaacgattcgagctttcggcgtacaagagaatttcacagacttttacaatcaacatcaagatggtcacacaaaagcctggtttgcatacatcggctcagcagcatggttgagcttcagacttgaaattctgtcacttctcttcatatcatttgtcgtcttcatttcaattgcgatcaaagacgagttatctttgacggccggacaagtcggattgatgttatcatacacaatcaatatcacgggggtctttcagcaatgtgtacgacaaagtactgaagtggaaaatcatatgacgtcagttgagagagtgttagagtattgtgagcttgaatcagagccacccgctgaaacagatgtcaagcctcctgatgactggccaaaacgaggttctatcagattcaaggacatgagtttctcatatgctaaaggattaccgaatgttcttgatggtattaactgtcatataaaatcgaatgagaagattggagtatgtggaagaacgggagctggcaaatcgtcccttttgacaactttattccgactcagtgaaccaactggcactattttgattgatgatcttgatattatgaaattgggccttaatgatttacgaagaaagatttccattataccccaggatcctattttgttcagtggatcgatgagaatgaatctggatcccttttccgaccattcagatgtcgaagtttggggtgctcttgaagaggttcaattgaaagaggcagtggaagccttgcctggcatgctggagagcgaaatggccgaatcaggaaacaatttaagtgtaggccaacggcagcttgtttgcttagcgagagcaattttaaggagaaacaaaattttggtcattgatgaagctaccgctaatgtcgacccaattactgatggccttattcaaaccaagataagagagaagttcaaggactgtacggtgttgacaatcgcccatcgtttgaatactatcatggactctgataggatcatggtccttgatgctggaaagatacgagaatttgatgaaccgtacaatttattgaaatcaaagaataatttgctttataaactggtggcacaaactggaggagcagaagcacagcaactttacgaaatggcacgtaaatctcattttagcaagagtaaaaaggaaaagaaaaagaaagaaaataacggaagtaatgataccgatgatgatgatgatgatgatggtacgaaacacgttgaagtgaatttatcgttgcgaatcggaaacctcagcggaggagcttcagacggaggggctgatggttggaaggttaaggtagtacctgatatacaagttcaggatactgatgacacttctttttagaaattgttgactaaagcttttacaagccgtatatatataaagatgtgtatttttttacatatatgaaatatttaatatctcattttcttatgagattataacatttgctgaacaccgtaaaacgtataagtgacaaagagatgaaattcatatttcccaggtagactcagtggtcaaacacaaagcaagcttaaaaggcatgtgatcaattaaaatttcttttcaatcacgcattacagcaattttctctattcatgtgatcagtttgaatagcaaccaatcatttgccgagaatttgatggatgatgacaggttgggtatacactggccttatatatggacacattacctttaaacgtaactttgggttgagggggaaagttcttatacagggtagtatcctggggctagactcaactcgggtgcctaggctacagttgagaatgaatcacagaaagttgataaataaagttggtaaaggccctgcttgagaaattatttgtaattgttcccaagagcgttttgttttgaacgacaatgtttaaaaatgattgaactgtacttactgttacatcgaacctaacgtttcttcaacgaaatcattgctttgaggggcagctatccctttgcacctccatcatccccggggggggcactttaccagattttggacccaaaatatacatagtgtcatcatccccactaagcaaacagaagcagaagaaaaagtttatcaaagtcaagtaacaaaatagagtaacaactttttattcggaaatttgtcgaaaatgtctcaattttgatttcaaaatgccaaatagctcggagattcagtagtttatcattgttacaggcttctaggaactatgcttgctgacaggagagagaatttcgactgatttataatcgacttctatatacatttactgtaggatttttagtagcttttacaacatttgatataccttaccttttaataacgcaggagagactttacctcgattgaaacaatttttgtcattgagctaacagcccaattgtatcgttgtaaagtagtttttggggttggtaatttgccagctcttaataaaagtgctttacctttcctgagtatttagagctttacagattattaatacagaatttttcagaatttgctgcaaaagaaaatcggaaatccaga

Transcript

scaffold24.g62.t1

ATTAATGATTTATTGATGAGCAAACGGCAAAAGTACTTGTTTGACAAGATACTCCTTTATTTTGAAAATACAATTTTCGTATCACCAACATTTTATTTCTTGTCATTTTTCCCCAGATAGAAGTCCGCTGTTTGGCCATTTCTCCACAACACTTCTCGGCTTACCAACGATTCGAGCTTTCGGCGTACAAGAGAATTTCACAGACTTTTACAATCAACATCAAGATGGTCACACAAAAGCCTGGTTTGCATACATCGGCTCAGCAGCATGGTTGAGCTTCAGACTTGAAATTCTGTCACTTCTCTTCATATCATTTGTCGTCTTCATTTCAATTGCGATCAAAGACGAGTTATCTTTGACGGCCGGACAAGTCGGATTGATGTTATCATACACAATCAATATCACGGGGGTCTTTCAGCAATGTGTACGACAAAGTACTGAAGTGGAAAATCATATGACGTCAGTTGAGAGAGTGTTAGAGTATTGTGAGCTTGAATCAGAGCCACCCGCTGAAACAGATGTCAAGCCTCCTGATGACTGGCCAAAACGAGGTTCTATCAGATTCAAGGACATGAGTTTCTCATATGCTAAAGGATTACCGAATGTTCTTGATGGTATTAACTGTCATATAAAATCGAATGAGAAGATTGGAGTATGTGGAAGAACGGGAGCTGGCAAATCGTCCCTTTTGACAACTTTATTCCGACTCAGTGAACCAACTGGCACTATTTTGATTGATGATCTTGATATTATGAAATTGGGCCTTAATGATTTACGAAGAAAGATTTCCATTATACCCCAGGATCCTATTTTGTTCAGTGGATCGATGAGAATGAATCTGGATCCCTTTTCCGACCATTCAGATGTCGAAGTTTGGGGTGCTCTTGAAGAGGTTCAATTGAAAGAGGCAGTGGAAGCCTTGCCTGGCATGCTGGAGAGCGAAATGGCCGAATCAGGAAACAATTTAAGTGTAGGCCAACGGCAGCTTGTTTGCTTAGCGAGAGCAATTTTAAGGAGAAACAAAATTTTGGTCATTGATGAAGCTACCGCTAATGTCGACCCAATTACTGATGGCCTTATTCAAACCAAGATAAGAGAGAAGTTCAAGGACTGTACGGTGTTGACAATCGCCCATCGTTTGAATACTATCATGGACTCTGATAGGATCATGGTCCTTGATGCTGGAAAGATACGAGAATTTGATGAACCGTACAATTTATTGAAATCAAAGAATAATTTGCTTTATAAACTGGTGGCACAAACTGGAGGAGCAGAAGCACAGCAACTTTACGAAATGGCACGTAAATCTCATTTTagcaagagtaaaaaggaaaagaaaaagaaagaaaataaCGGAAGTAatgataccgatgatgatgatgatgatgatgGTACGAAACACGTTGAAGTGAATTTATCGTTGCGAATCGGAAACCTCAGCGGAGGAGCTTCAGACGGAGGGGCTGATGGTTGGAAGGTTAAGGTAGTACCTGATATACAAGTTCAGGATACTGATGACACTTCTTTTTAGAAATTGTTGACTAAAGCTTTTACAAGCCGtatatatataaagatgtgtatttttttacatatatgaaatatttaatatCTCATTTTCTTATGAGATTATAACATTTGCTGAACACCGTAAAACGTATAAGTGACAAAGAGATGAAATTCATATTTCCCAGGTAGACTCAGTGGTCAAACACAAAGCAAGCTTAAAaggcatgtgatcaattaaaatttcttttcaatcacgcattacagcaattttctctattcatgtgatcagtttgaatagcaaccaatcatttgccgagaatttgatggatgatgacaggttgggtatacactggccttatatatggacacattacctttaaACGTAACTTTGGGTTGAGGGGGAAAGTTCTTATACAGGGTAGTATCCTGGGGCTAGACTCAACTCGGGTGCCTAGGCTACAGTTGAGAATGAATCACAGAAAGTTGATAAATAAAGTTGGTAAAGGCCCTGCTTGAGAAATTATTTGTAATTGTTCCCAAGAGCGTTTTGTTTTGAACGACAATGTTTAAAAATGATTGAACTGTACTTACTGTTACATCGAACCTAACGTTTCTTCAACGAAATCATTGCTTTGAGGGGCAGCTATCCCTTTGCACCTCCATCATCCCCGGGGGGGGCACTTTACCAGATTTTGGACCCAAAATATACATAGTGTCATCATCCCCACTAAGCAAACAGAAGCAGAAGAAAAAGTTTATCAAAGTCAAGTAACAAAATAGAGTAACAACTTTTTATTCGGAAATTTGTCGAAAATGTCTCAATTTTGATTTCAAAATGCCAAATAGCTCGGAGATTCAGTAGTTTATCATTGTTACAGGCTTCTAGGAACTATGCTTGCTGACAGGAGAGAGAATTTCGACTGATTTATAATCGACTTCTATATACATTTACTGTAGGATTTTTAGTAGCTTTTACAACATTTGATATACCTTACCTTTTAATAACGCAGGAGAGACTTTACCTCGATTGAAACAATTTTTGTCATTGAGCTAACAGCCCAATTGTATCGTTGTAAAGTAGTTTTTGGGGTTGGTAATTTGCCAGCTCTTAATAAAAGTGCTTTACCTTTCCTGAGTATTTAGAGCTTTACAGATTATTAATACAGAATTTTTCAGAATTTGCTGCAAAAGAAAATCGGAAATCCAGA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00664 all species →	ABC_membrane	ABC transporter transmembrane region	Family	Interproscan
PF00005 all species →	ABC_tran	ABC transporter	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR036640 all species →	Homologous_superfamily	ABC transporter type 1, transmembrane domain superfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR011527 all species →	Domain	ABC transporter type 1, transmembrane domain	Interproscan
IPR003439 all species →	Domain	ABC transporter-like, ATP-binding domain	Interproscan
IPR017871 all species →	Conserved_site	ABC transporter-like, conserved site	Interproscan
IPR050173 all species →	Family	ATP-binding cassette transporter C	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24223 all species →	ATP-BINDING CASSETTE SUB-FAMILY C	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0140359 all species →	Molecular Function	ABC-type transporter activity	Interproscan
GO:0042626 all species →	Molecular Function	ATPase-coupled transmembrane transporter activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05654	ABCB3, TAP2; ATP-binding cassette, subfamily B (MDR/TAP), member 3	EC:7.4.2.14	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.