Gene detail

Detailed information of scaffold242.g1.t3 in Morbakka virulenta

Genomic Location: scaffold242:1306...58437
NR annotation: XP_047125253.1, rap guanine nucleotide exchange factor 6 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

scaffold242.g1.t3

GCTGATCTCCAGCAGGTCATCACAACTAGTAAAGTAGAAAAAATCTAAAGATTCACAGGACATGTAACTAGTGGTAGGATATCAATAGTTTTATGAAATATTTTAAACTAGTGTGATACCATTGATTTGGTATCAAAATTTTGAACTTTGTAGTGATAGTAAAGTACTATGGCTACTCACTTATTAATAGCAGGATGTGGACCTGATTTACAGGCACTTGAGAGAAATGCAAGCTACAACTTTGCTGTCAGAGCAAGCAATTATGGCAATGGCACAAAGTGCGAGATATGATGTACACGAATCAAACGAACTTCTTTATACGGCAACAGATATTGCCAATTGTTGGTACATCTTACTGTCAGGTTCAGTGTACTTAGACGGATGTATGTTTTTGCCAGGAAGCAGTTTTGGTAAAAACAGCATTGGAGGAAAAAGAGGATGTGACTGTTTAATTCTCGAAAAATCGGAGATGGTTGTTATTGATTACCCAAATGAAAAAATGTTCAAACCTTGTCAGAGAAAATCGTATTCCACTCATGACCTAGAGAAACTTCTGGCTTTGGAATCTGATGAAATCAAGGTGGCCGTTCAAGTGGAAGTTGAGGAAGAGGAACTACCCAAAGAACTACTGAATGTGAAAGAGATTGTACGTCGTAGTGAAGCATATTTAGATCGTGTTGACAAAGAGGGAAAGAAACGATCAAACAGTAGTGTGGCGTATAAACAGCATGGCTATTTAAATGAGGAAACAGACATAGATTTGTCGGGATTAAAGGAAACAATGGTGGATACTCTTGATTCGGATGATGAAGATGATGTTACTCTGACAGGAAGCGAGTCTTCTGCTGTCAGAGACATCGTTCGGGACTGCCTTGAGAAGGAACCTTCAGAAAGAACAGAGAGCGATATAAATATTCTGATGGATTTCATGCAACATTTACCGGCCTTTAGCAAACTTTCACACAATGTTCGATGTGAAATGTGCAAAGTGATGGTGTTCGCTGTCGTTGAGGAAGCCGGCTCTCTTGTTTTGGATGACAAAGAAGAGATGGATTCGTGGTCAGTCATTCTCAACGGATCAGTTGAAATCTATGAAGACGGCAAGCCACCAGTGACAATGCATTTAGGGGACTGGTTTGGAGTAAAGACAACACCAGAGCCTATCTTTCACAAAGGCGTAATGCGAACAAGGGTTGATGATTGCCAGTTCGTATGCATTGCACAAGACTATTATTGGAGAATTTTTTCGCAAGGAGAAGCAAGTACCCGAAAAGTGGAAGAAGAAGGCGAAGTTGTTATGGTGATCGAACATCGTGTTACTGATGGTGGGAGCCGACAGGGCGAAGTTGTTATACGAGCAACATCGGAACGTCTTCAAGATCATCTTGTTGATGACCATTCTAGCATCGACCCTACTTATGTAGAAGATTTTTTATTAACGTATGGCGTCTTTAACGATAAGCCGCATGAGCTTGTAACTAAGCTGTTGAAATGGTTTGATCGAGGCCAGCTCAAAGATAAGGTTACTCGCGTCATGCTTCTTTGGGTTAATAATCATTATAGTGATTTTGAAGGTGATCACTATATGGAAAGTATGCTTGAGCGATTTGAATATTTACTCGAGGCCAAGCACATGGATGGGCAACTGCGTTTGTTAAATATGGCGTGCTCTGCAAAGTCAAAGCCAAGAATGATTACTCTGtaatatGGTAAAGACGTATTTTCTATGGTACCAATGAACCTCCACCTTTCTCCACCattctgtccatcgatccatgatttcatctttttccatcagcagagatccatctctggcttgaatacattcgctggaaacacatgttttcctaccgacaagtgtgttgattttcttgtgcaatgatgaagggctttctactctgcatctctcgatttccgcgcactgtacatttagccattcttcttttgcttctctacacttctttctgatgtttcgattcagagtgtggtaccgatctgagtctttatttctcactttctgtctttcttccatcatttccaagatttcctttttcatccatccttttttccggtccctctttatcggtgggatcagctccttggcagtttcaaccagggcttccttcagcacttcccatttgctgacttggtcactttcgagagcagcaaatctattttgcacttccacagcatatcgtgtcttcatttctgcattctctcgtagtaagttccactgcagttttgcgtctggtatagcatgtttcaatttgcgaaggcgaaccttggtggtgcatactactggattgtggtcgctgtcacagtctgctccagggtatgcttttgcgttctgaactgagttcttaaatctatgattgatggtgatgtaatcgatttgatttcttgttctgtctcccggttgtttccatgtccatagacgtcgtttatggttcttgaaccaggtgttcatgatcacttggttgttagctttgcaccagtcagcccatcgttcccctctttcgttaatcactcctagcccatactttcctgatacttgctcgatttcttcactacctacttttgcattaagatcgcccataacaatgatgatgtcttgtgacttacattgtctttttgcttcatcgagttgctcgtagaacagttctatatcatcttcgctgctatctgctgtcggtgcatatacttgaatgagactgatgtcgaagggcctaccttttattctcaccagcattactctgtctgacagggtccaatagccgagtatgcacttgctggctgcttggtcaaatatgattcctactcctctttcatgcttgtttccactagagtatatgacttttttgccattcagatcgaaacttcctgaccctgtccatctcgtttcacataagcctagtatattgatcttcatacgatccatttcttgcttcacatttgatagttttcctgcttgatataatgtgcgtacattccacgttcctattcgaagacaattgttgttcctgacagtatctggattacggtcgggctccacctgtcggacatggaggttcctaccgagcgaggtgttagttgtcctaaccccattcacgctgttcgtgttattctttttcttgtgcattagcatgactttcttggcaagttacggtggtggtttgccattgccttccaccggtggatggccacttaaatctaatgcctctttgtgccctcagcataccacgatgcgcttgcaggttacgccttgttgccgttggtcctttgggactcatccaccaactctgccgttccctgtcttcatgcgcttagtgcgaggcgtgcactattcaccaacaacaagttgctggctaccctcatgtcgtttagcccgccagctgaggcggtgtaccggggtgtggccgctgccgcgcacaagcagctacttggagccagacatgagagttgggtgacttccggatgccagtgggtccatcccccgtagggcagctgatggttgcctctggatagtactccttctgatcaccccatacaccccACCAATGAACCTATTAAAGCAAT

Protein

Uniprot

Uniprot term	Description
Q8CHG7	Rap guanine nucleotide exchange factor 2 OS=Mus musculus OX=10090 GN=Rapgef2 PE=1 SV=2
F1PBJ0	Rap guanine nucleotide exchange factor 2 OS=Canis lupus familiaris OX=9615 GN=RAPGEF2 PE=1 SV=2
Q9Y4G8	Rap guanine nucleotide exchange factor 2 OS=Homo sapiens OX=9606 GN=RAPGEF2 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00618	RasGEF_N	RasGEF N-terminal motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008937	Family	Ras-like guanine nucleotide exchange factor	Interproscan
IPR000651	Domain	Ras-like guanine nucleotide exchange factor, N-terminal	Interproscan
IPR000595	Domain	Cyclic nucleotide-binding domain	Interproscan
IPR023578	Homologous_superfamily	Ras guanine nucleotide exchange factor domain superfamily	Interproscan
IPR018490	Homologous_superfamily	Cyclic nucleotide-binding domain superfamily	Interproscan
IPR014710	Homologous_superfamily	RmlC-like jelly roll fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23113	GUANINE NUCLEOTIDE EXCHANGE FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005085	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0007264	Biological Process	small GTPase-mediated signal transduction	Interproscan
GO:0007265	Biological Process	Ras protein signal transduction	Interproscan
GO:0016324	Cellular Component	apical plasma membrane	Interproscan
GO:0043547	Biological Process	positive regulation of GTPase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K25788	CATIP; ciliogenesis-associated TTC17-interacting protein	-	Cilium and associated proteins	ko03037	deepkoala