Detailed information of scaffold2423.g2.t3 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold2423:2976...15881
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 Gene family
Family typeMembership / link
Ubiquitin familyE3|E3 activity|RBR · all ubiquitin genes in this species

 Pfam domain
No Pfam domain signature was detected for scaffold2423.g2.t3. This gene does have a gene model — the search simply returned no hit.
 InterPro
InterPro termTypeDescriptionSource
IPR047544
all species →		DomainE3 ubiquitin-protein ligase RNF216, RING finger, HC subclassInterproscan
IPR013083
all species →		Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR051628
all species →		FamilyLinear Ubiquitination-Associated E3 LigasesInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR22770
all species →		UBIQUITIN CONJUGATING ENZYME 7 INTERACTING PROTEIN-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000151
all species →		Cellular Componentubiquitin ligase complexInterproscan
GO:0004842
all species →		Molecular Functionubiquitin-protein transferase activityInterproscan
GO:0043130
all species →		Molecular Functionubiquitin bindingInterproscan
GO:0043161
all species →		Biological Processproteasome-mediated ubiquitin-dependent protein catabolic processInterproscan
GO:0071797
all species →		Cellular ComponentLUBAC complexInterproscan
GO:0097039
all species →		Biological Processprotein linear polyubiquitinationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for scaffold2423.g2.t3.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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