Gene detail

Detailed information of scaffold244.g13.t1 in Morbakka virulenta

Genomic Location: scaffold244:608948...643962
NR annotation: XP_047123976.1, CARD-caspase isoform X2 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

scaffold244.g13.t1

GACAAAATAGTTTCACTTTCGTTTCCTCTATTGTCCTCTATGTAAGAACGAGGCTATCTATGTATATTTTTGGATGAGGGTGCCTTGCTGAAATTGATCATCAAATCAGTTTATGTGAAGGCAAAACCTGATCAAGTTTAGTGGAAACAAGAAGAAAGCAAATTGTACATCATTCTATTCAAAGCAACATAACAACAATGGAGCCAAAACATAGAAATTTACTCAGATCATCTCGTATGCGCCTTTGCAATGATATGGATGGTGATTTAGTTGCATCTCATTTGTTTTCAGCGGGTATTCTCAGCGCCAACCATAAAGACAGTATTAAAGCAGAGCTTACCCCTTTCAAAAAAAATGAACAACTCTTGGATCTACTGCCTCTTTGTGGACCTAGGGCATTTGTTGAATTTTGTCGTGTTTTGAAAGTGGTACATCCAAATGATAAAGGTCTTTCGGAATTTGATGTTAACCCACCAACTAAAGATCGTGATGAGGAGCCTGACATAAAGAAAGCATTGGTAGAAAACAACCAGAAAACTTTTGAAGATGCTGTTGATTTAGACAACTCTGATGGAAGATGGTTAGGAAAGAGCAAGCAGCCATCCATTTTACCACAAAACATCGATCCTCCGCCAACATATGGAGGTAGTTATACCACAAACATGCAGTCTGATGATTTCTATGATATGAATAAGTTCCCTAGAGGCTTTATGATACTAATCAATAATAAAGACTTCCTTCCATCATCAGGAATGGAAAATTATCCAAGGAATGGCACTGATGTGGATGCCGAGGCTATGGAAAAATTGTTTGTAGATTTGGGATATGTTGTACAGCCACACAGAAATGTCACCTGTTCTGAAATAAAGAGTATTATGAAACAGGCAGCAGGAATGAATTTTGGAAGTACGAACTCATTTGTTTGTGCCATTTTGAGTCATGGACAGGAGGGCGTCATATATGGCATTGATGGTACTGTCGAGATTCGACAGCTAACTGCTTATTTTCGAGGTAGCAATCTGGCGGGAAAACCGAAAATATTTATATTCCAGGCTTGCCAAGGTTCCGAATATATGGATTCAGTAGATGTTACCGACGCACCAGTAGATGAACGTGGGAATGATGTCACGTTACCCACCGAGTCCGATTTTGTTTATGCTTATTCAACTGTACCAGGATATTACTCATGGAGGAATTCCATACGAGGATCTTGGTTTATTCAAGCAATTGTTGAGACATTTCGTCAAAATGCACACAAGATGGATTTGATAAGGATGCTGACGAGGGTTAATCAGATTGTATCCACAAAAAAGTCAGCCACTGGGCAGCGTGCTTCAAATAACAAACGCCAGATTTCCACCATCATTACCCAACTGAGAAAGGAGTTATTCTTTTTTCCACCTGGTGGACCATTGTCAACGACACATTAGAGAATGCATGAAATTCTCTAGTCTATACTTTCTACACTCTTGTCACTTTAAAGAAAAGTATTACCAACACTGCCATATTTGAAAGTAGATTGATGTAGACAGATCCATTTTATATTTTTAATGTCCTGCTTTGGCACGAAGTAGATATGATCAATTGACTTCATTTGTTACAGAACATTTGTATCAAATTGTTTTAATCATAACACCCAGCCCCTTGGTTTCACTACAAACCTTTTATACTCTCGCTATACTTGTTAGGCTAAAGGTGTAAGGGAGTAGCGTAAAGTGGTGATAACATCTTTCTCTTGACATTTGCTAAGTTTTAAGGGATGGAAAGGTTTGTTCTATTAGGATTTCCGTAATGAGAGCTTTTAAATGTTCCCTTGTATTTAATATATTTTTTAAAAGTAGTGATCGCCCTTTGACATTATGCACCCCTTGATTTGGCAATGCGACTACTACGATGCACTGCTGTACTTTTTTTAAAAAACGTTTTCAGGGGGTACCTGGGTACCAGTTACTCAGTATTTTGATTAAATATAGCCATTGTTTGCCTAAAAcaggggtgtccagagttttggagagtgggaccaatttctaaaatttcttacctgcttggggccctaggtacatttcgagtcagttcaatttgtgtccctggatgtcagaagcaagcatgcgtatacgcggttcaagttgctaggttgttgttcgaagaactgtctttaggtggtcatcagtcatttgtgatcgttgaggtgatatgatgttcttcatacgtgaaaatgttcgttcacagatgtaagtcgaacaaaaaacactcgggtagagttgagcaaacttgagcaggtttgggaactcttctgcttaatgactccaacagttcaacgccaaaacaaagcgttgggttggtagtgtttagtgaagcacaacagttgaagtgagtgaaacagccggacttcagttgacttacaaggaaatccaactttgattaaaatgcgagtacgaactgatacagatcacacactagatttcttttcccttggaggcgcttgttcatatcattaatgtggccagtcacgtcagctacaactgcgagcttccatacccaagaatcatcagataggtaaaccgcggacctgcctgctgacttaatgaagtccgatataggcttccgtaaatcgaaaaaccttttcagtgaggaacccgcgcttagccaacgaacttaaaagcgacaaagaaaatttttggcaatagtgtcaacgtcaaagtcagtagactcctgaagtagtgcaatgaattgtcggtggtgtaatgcatggtgacgaatgtatgtgatggtcggttctgcaacttttaaaatatccgagatatgagggacttttgctgatgtatgagacagtgcaggaatataggaagctgaacatcttccccagactcccgaagatggccactaactcttccaacgacactgctctttttaccggtcatattggaagccccatctgttgttaatgacgtaagtttattccatttcaaaatgaaaatctctagagaagaggagacagcagtgaataggtcataaccagtagtagtgcccttcaatgattgtaaatcaatcaattgttcagtaatcttaaaggaattgtcaatgcctcgaataaaaatgcgctgcaccatatcactactatccgtagactcgccaattgccaaggagaagtgggcgaaatgttgacataaacacgaaagctgtccttgaaggttaagggcaacatctattctgcgtgtaatagaatttcgcgataagctcacaacttcaaaatctttggatgtgttgggactgacttcatcaacaattgcacgcatgcagtccgtgatgagttctccatctgaaacgaaaacacattcattgactagacctgcagtgccttcgaaaatagcaaacaataatattgtgtgctagtaggcccatatatctggcactagcatagcaagg

Protein

Uniprot

Uniprot term	Description
Q8MKI5	Caspase-3 OS=Canis lupus familiaris OX=9615 GN=CASP3 PE=2 SV=1
Q5IS99	Caspase-3 OS=Saimiri boliviensis boliviensis OX=39432 GN=CASP3 PE=2 SV=1
Q60431	Caspase-3 OS=Mesocricetus auratus OX=10036 GN=CASP3 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00619	CARD	Caspase recruitment domain	Domain	Interproscan
PF00656	Peptidase_C14	Caspase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015917	Domain	Peptidase C14A, caspase catalytic domain	Interproscan
IPR033139	Active_site	Peptidase family C14A, cysteine active site	Interproscan
IPR001315	Domain	CARD domain	Interproscan
IPR001309	Domain	Peptidase C14, p20 domain	Interproscan
IPR002138	Domain	Peptidase C14, caspase non-catalytic subunit p10	Interproscan
IPR011029	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR029030	Homologous_superfamily	Caspase-like domain superfamily	Interproscan
IPR011600	Domain	Peptidase C14, caspase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10454	CASPASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0008234	Molecular Function	cysteine-type peptidase activity	Interproscan
GO:0042981	Biological Process	regulation of apoptotic process	Interproscan
GO:0004197	Molecular Function	cysteine-type endopeptidase activity	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006915	Biological Process	apoptotic process	Interproscan
GO:0043525	Biological Process	positive regulation of neuron apoptotic process	Interproscan
GO:0097153	Molecular Function	obsolete cysteine-type endopeptidase activity involved in apoptotic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K04399	CASP9; caspase 9	EC:3.4.22.62	Peptidases and inhibitors	ko01002	deepkoala