Gene detail

Detailed information of scaffold244.g9.t2 in Morbakka virulenta

Genomic Location: scaffold244:382313...427905
NR annotation: XP_047124425.1, heterogeneous nuclear ribonucleoprotein H [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

scaffold244.g9.t2

ggtaacaacaagtcaccaggggtctcaaagttccttctcctgtttctctaaagagacaagacttttcgcagtatcctccctgtttcaagcagtgccgttttctgaataattgccatctcaatcttcacacccattttctccatgtatctttcaaacttgtttgaaatgactcccaatgctccaattactacaggtatcaccgtaactttattcatttgccatacatgacctatttcttctctcaacatttggtacttttcaatcttttcaagttctttttctgctactcttgaatctcctggcacagcaatatctattatttttacttctttgttcctcttatctaccaacacaatatctggccgccttgcttcaataaatctatcacactgaatggtgaaatcccataggagcttgaaattctcattttcaattactgcttcgggttgctgttcataccatttctcagctctttccaagcctcctttgttgcaaagttgccaatgaatatatcgtgccacattgtcatgtcttttcttgtactctctttgagctaattttccgcattcactaaccagatgactaatagtttctcctttttctctgcacattctgcacagtggggaatcagcattcttatcaatatggaactttgtgtaattcgttcttaaagcttgttcttgagcactggatatcagtgcttcggtacatcccttcaaatctccctttgcgagccattgccatgatttatcccaattcactccttccttgtccctcaaaaactgtccatgcatcaccttctgtttccattcctcttccatttcctggctcttaaactttttgtaatcatttggttccattgctttctcggtattaactatactgacttcccctacttttctcaagagaatctctttgctgttctttatgtaccaactcaggttattttcttctccctttacacagttctcacaactcatcaaacctcttccacccctctttcttgaaacgtatatccttgcaacgtcactccttggatgaagttccttgtttattgtcataacttttcttgtttttctgtcgatctcttgaagctcattcttagtccatctaagtatgcctgctccattgaatcgtcgcaaatattcctttcggaataattctttcatctccttctcctttatcttgtcaagctctaaaataccaaggtatttgtatccttcatcactaacctcccgaatactttctccatttgttagtgttatatcttcacttttgaccaatttccctcgtttcatgataataacgccacacttctttaccccaaactgcattccaatatcctgacttatcacttgcactgtcgacacaagactatcaatttcattcttgttcttagtaaacatctttaaatcatccatgaataaaagatggttgattttcacgtctccaagcctgtaccctgctttagccttgcgcaatacttttgacaaaggtatcatacaaattacaaaaataagtggagaaagactgtctccttgaaagattcctctcttaatgttgactgttccgagagactctccacatgacatcaattccgttttccaattcctcattgatcgctgaagaaaacttgttacattttgtggtacttgtgccattttcaaacattcgactatccacgagtggggtaccatgtcataggcttttttataatccacccatgccatggcgaggttcttttgtcgttttttgcaatcagtgaggatcatcttgtcaatcaaaagttggtccttcgttcctctgctcttttttctgcatcctttttgttctgttggtagaacatcactttcttctagcatcttgtatacactatcagcaatgactcctgtcatcagtttccacatgagtggtaggcaagatattggtctatagttatcaaccacatttcctttctgcgggtctttctggcacaacactgttctgcccattgtcatccaggcaggtacaggaaccctgctatttatcatctcattcatttgtttggcgatcctgtcatgcagtgatgtcaacttttttatccagtatccttggaccccatcaggtccaggtgctttccagtttggtattttctttgcctgtgctgataccattacacagtcaatcattatgtcatcctgtcttgtttccccacattcatcttttaattccttcaaccatcctgcattattattattattattattattattattattattatcatcattattgttattacttttaatattaatattattTGTTTTTGTAGTATCAGTACCCAGCAAATTATCATATTTTATGCTACTAATAATGACCTAACTATGTTTGAAGATATTTCACATAACCATTTTGCCTGAGATCTCCTCTCCTCTCCATTACACAGATTCCCATTTTGGTTTAATATTTTTTCTCTTTGCATTGTGCGTGTACAGGGCCTTGGCACACAATGATGAACACATAGGAAAAAGATATATCGAAGTTTTTAAAAGTAAATATACTGAAATGGAATGGGTCATCAAGAAAGCAAATCCCAAGAATTCAGGGGAACCTGGTGATGCAGTAGTTCGTCTGCGTGGTCTTCCATTCGGTTGCACGAAACAAGACATAGCTACATTTTTTGCAGGGTTGGAGATTGTTCCCTACGGGATAACGATTACTCTTGATCAAGATGGGAGGTGTACGGGGGATGCCTTCGTAGAGTTTACTTCACCCCAAGAAGCAGACAAGGCATTACAAAAGCACAAAGAAAAGATAGGGCACAGGTACATAGAAATATTCAAGAGCACCAAAGCAGATATTAAATATGTTGTTGGCCCAAAGCTGAAGCCGCTCATGTCCGTACGGCCAACGCCATATGATCGACCAGCATTCAGTAGCAGGGCACGTGGAAGAGGTGGTAATTTTGGTGGCTTTGGACCAAGTGGATTTAATGACGCTGGGTTTGATGAAGGATATGGGACGCCCGGTGGTTTTGGTGGTGGAATGGGCTCAAGAGGCCGCGGAAGTCGAGGTGGCCGTGGGGCTGGAATGATGCAAAACCGCCGCGGCGCTGGAGGAAAAAGCCAGCTTTCCGTTATGAACAGTACAACAGGCCACAGTGTTCACATGAGGGGATTGCCATTTGAAGCCACAGAACAAGATATTCATGAATTCTTTACACCACTTAACCCCGTACAAGTGAGACTGATTTTCGAACCTAGCGGTAGACCTAAAGGTGAAGCCGACGTTGATTTTGCAACACATGAGGACGCCACAGCAGCGATGCAGAAAGACAAACAACACATGGGTCATCGCTATATTGAACTATTTCTACAGTCCTCGCCAGGAGGCGGTGGTAGCTGGGGTGGACAGTCAAATAGAGGAAGTTTCGCAAAAGGAGGATCCGGTTATGGCATAAATGGCAGTGGCACGATGAGCAACACTGGAAGTACCGGCTATGGAGGTGGTTATGGCTCAAGTAGATACAACAACAGCGGCTATGGGAATCAAGGCGGACCTACTGGTGGAAGCGGTGGTGGATTTGGACAGAATACTAATTATAGTGCATACCAAAgtagtggtggttcatatggtagtggtggtggtggtAATAGTAATTCGGGTATGGAAAGCCGCACAGGGTATGGCTATGGATCGGGAAATCAAAATAGCTTTGCGAGCGATATTACATACCCCCAAGTTGGCAGTGGAGGGTTCTTTGGTGGCCAAAATAGCTACCGTTAGGGAAATTCGTTTTAACATTCAAACAGCAGCTAACGTTGTTTTTTGGGAGGATGTATTTGACTACATTTTGTACACTGATATTTATTCATGCTGAAGGGTGTTTATTTGATTTCTGTCTTGCAGGGAAAATTTATCTGTAAAATTGGGTACCGTTGTATTTTGCGATCGCTAGGCTTTTTTTATTATGTACAGTCATTTCCCGTCTTCTGCGTTGGTAGGGTAGTTCGTCAGGTTTTCCTTTCTGGCTATACGATGATCGCCGTGATTTCGTTTTGGGAAGGGCTGATCGATTTTACTAATTTTTACATCTCGTTCGCAGTAAGCATTCATAGTAAACTATGGTATGAGTTGTTGTTCTGCGCTTGTACATTTGATCGTCTTGCAGGTGTTTGTTTTGATTAAGAGGCAGTAGTGTTTTAGGCTAGTTTGTGTTGTAAAGTTGAAGATTTGGTTTTGCTCTTACACATAGCTGCTCGCAAGTTCGAACGCACATACGCACTGTATCGGGCATACGTTAACAAACAATGAGAAAAACTAAGCGTAGTAACGAAATTTGACCGTGCGATAAAGGCCCTGTTAAAAC

Protein

Uniprot

Uniprot term	Description
P31943	Heterogeneous nuclear ribonucleoprotein H OS=Homo sapiens OX=9606 GN=HNRNPH1 PE=1 SV=4
O35737	Heterogeneous nuclear ribonucleoprotein H OS=Mus musculus OX=10090 GN=Hnrnph1 PE=1 SV=3
Q8VHV7	Heterogeneous nuclear ribonucleoprotein H OS=Rattus norvegicus OX=10116 GN=Hnrnph1 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR050666	Family	Epithelial Splicing Regulatory	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13976	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:1990904	Cellular Component	ribonucleoprotein complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12898	HNRNPF_H; heterogeneous nuclear ribonucleoprotein F/H	-	Spliceosome	ko03041	deepkoala