Gene detail

Detailed information of scaffold244.g9.t3 in Morbakka virulenta

Genomic Location: scaffold244:399511...427905
NR annotation: EDO37823.1, predicted protein, partial [Nematostella vectensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

scaffold244.g9.t3

ggtaacaacaagtcaccaggggtctcaaagttccttctcctgtttctctaaagagacaagacttttcgcagtatcctccctgtttcaagcagtgccgttttctgaataattgccatctcaatcttcacacccattttctccatgtatctttcaaacttgtttgaaatgactcccaatgctccaattactacaggtatcaccgtaactttattcatttgccatacatgacctatttcttctctcaacatttggtacttttcaatcttttcaagttctttttctgctactcttgaatctcctggcacagcaatatctattatttttacttctttgttcctcttatctaccaacacaatatctggccgccttgcttcaataaatctatcacactgaatggtgaaatcccataggagcttgaaattctcattttcaattactgcttcgggttgctgttcataccatttctcagctctttccaagcctcctttgttgcaaagttgccaatgaatatatcgtgccacattgtcatgtcttttcttgtactctctttgagctaattttccgcattcactaaccagatgactaatagtttctcctttttctctgcacattctgcacagtggggaatcagcattcttatcaatatggaactttgtgtaattcgttcttaaagcttgttcttgagcactggatatcagtgcttcggtacatcccttcaaatctccctttgcgagccattgccatgatttatcccaattcactccttccttgtccctcaaaaactgtccatgcatcaccttctgtttccattcctcttccatttcctggctcttaaactttttgtaatcatttggttccattgctttctcggtattaactatactgacttcccctacttttctcaagagaatctctttgctgttctttatgtaccaactcaggttattttcttctccctttacacagttctcacaactcatcaaacctcttccacccctctttcttgaaacgtatatccttgcaacgtcactccttggatgaagttccttgtttattgtcataacttttcttgtttttctgtcgatctcttgaagctcattcttagtccatctaagtatgcctgctccattgaatcgtcgcaaatattcctttcggaataattctttcatctccttctcctttatcttgtcaagctctaaaataccaaggtatttgtatccttcatcactaacctcccgaatactttctccatttgttagtgttatatcttcacttttgaccaatttccctcgtttcatgataataacgccacacttctttaccccaaactgcattccaatatcctgacttatcacttgcactgtcgacacaagactatcaatttcattcttgttcttagtaaacatctttaaatcatccatgaataaaagatggttgattttcacgtctccaagcctgtaccctgctttagccttgcgcaatacttttgacaaaggtatcatacaaattacaaaaataagtggagaaagactgtctccttgaaagattcctctcttaatgttgactgttccgagagactctccacatgacatcaattccgttttccaattcctcattgatcgctgaagaaaacttgttacattttgtggtacttgtgccattttcaaacattcgactatccacgagtggggtaccatgtcataggcttttttataatccacccatgccatggcgaggttcttttgtcgttttttgcaatcagtgaggatcatcttgtcaatcaaaagttggtccttcgttcctctgctcttttttctgcatcctttttgttctgttggtagaacatcactttcttctagcatcttgtatacactatcagcaatgactcctgtcatcagtttccacatgagtggtaggcaagatattggtctatagttatcaaccacatttcctttctgcgggtctttctggcacaacactgttctgcccattgtcatccaggcaggtacaggaaccctgctatttatcatctcattcatttgtttggcgatcctgtcatgcagtgatgtcaacttttttatccagtatccttggaccccatcaggtccaggtgctttccagtttggtattttctttgcctgtgctgataccattacacagtcaatcattatgtcatcctgtcttgtttccccacattcatcttttaattccttcaaccatcctgcattattattattattattattattattattattattatcatcattattgttattacttttaatattaatattattTGTTTTTGTAGTATCAGTACCCAGCAAATTATCATATTTTATGCTACTAATAATGACCTAACTATGTTTGAAGATATTTCACATAACCATTTTGCCTGAGATCTCCTCTCCTCTCCATTACACAGATTCCCATTTTGGTTTAATATTTTTTCTCTTTGCATTGTGCGTGTACAGGGCCTTGGCACACAATGATGAACACATAGGAAAAAGATATATCGAAGTTTTTAAAAGTAAATATACTGAAATGGAATGGGTCATCAAGAAAGCAAATCCCAAGAATTCAGGGGAACCTGGTGATGCAGTAGTTCGTCTGCGTGGTCTTCCATTCGGTTGCACGAAACAAGACATAGCTACATTTTTTGCAGGGTTGGAGATTGTTCCCTACGGGATAACGATTACTCTTGATCAAGATGGGAGGTGTACGGGGGATGCCTTCGTAGAGTTTACTTCACCCCAAGAAGCAGACAAGGCATTACAAAAGCACAAAGAAAAGATAGGGCACAGGTACATAGAAATATTCAAGAGCACCAAAGCAGATATTAAATATGTTGTTGGCCCAAAGCTGAAGCCGCTCATGTCCGTACGGCCAACGCCATATGATCGACCAGCATTCAGTAGCAGGCAAGTTTTTTTTATATAAATTTCTACCCTCTGAAGTGACAAACGGGGTTAGTATCGGATTAAAGTGTTAAAGCTGTA

Protein

Uniprot

Uniprot term	Description
P52597	Heterogeneous nuclear ribonucleoprotein F OS=Homo sapiens OX=9606 GN=HNRNPF PE=1 SV=3
Q60HC3	Heterogeneous nuclear ribonucleoprotein F OS=Macaca fascicularis OX=9541 GN=HNRNPF PE=2 SV=3
Q9Z2X1	Heterogeneous nuclear ribonucleoprotein F OS=Mus musculus OX=10090 GN=Hnrnpf PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR050666	Family	Epithelial Splicing Regulatory	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13976	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:1990904	Cellular Component	ribonucleoprotein complex	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan