Gene detail

Detailed information of scaffold245.g23.t3 in Morbakka virulenta

Genomic Location: scaffold245:777223...804437
NR annotation: XP_031560246.1, probable ATP-dependent RNA helicase DDX52 [Actinia tenebrosa]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

scaffold245.g23.t3

gatattacttgggtttcatccagttggttccattctattacagttctaggaaaaagagaatttcggtagatggtggtgtttgactgaattatattaaagcatttagtattgttcctagcactatttgccactgtatttgtagaaacaaagtcaacaaatctggtagcacgtatcctgcgtttagcggagcttggtaccaaaaactgcgatgggggtatagccggtaccaacccctcaaccaccttataaagaaagacgagtcgtaattctttccttctagcctgtagtgtatctaggtcacattctttaagcatttggctgacgcagccctggtctcttgatttgaaatcttttttaataaatctggctgctctcctttgtatcttttctagtttgtcaatatctgatttcaggaaggggtcccatacaatacatccatattctaatgtagatcttaccaatgataagtaggcgttcttacggcatgtactggagcagtgttgtagattacgacgaaggaagcccagggtggaactagctttcttgcagatgttattaatatgggtgctccatttcaggtcttcagatatcataaggcctaggtatgggtttgttggtacttgttcgagtatatggttattcagttgataaaagtgtgaggatctttgtttcacactcaggacataacacttttttgcattaaagcgcataccccatttcagtgcccatatttctagctgtttcaggtcttcttgaaggatgttatggtcttccctagatcttatgggacgatataataaacaatcatcagcgaagaggcgcacttgtgatgttacacactccgTGGGGGTGAAAAAAGAAAAACTAAACTGACCCGAAATAAAACTATTTACTGAATGCTACACGGAGGACTCAAATCAGGCTTTCAAAATGGTGGACACGAGAGAGTTATTTTCAAAGTTGGGTGCTGGAGCAAAGTTTGATTTGAAACGATTTGGAAAGGATTTTGAAAGAATACAGCCTACATTACAGAATGGACTGGAAAGTAAAGATAAGGTTACATGTGCACTAGACTTCTTTGGAACATCCATCAACAAGATGGAAAACTGCAACAAGGAAAGAAAAGAATGTGCTAAGGCAGAATTAACTTTGCCAATAAGCAATCCAGTTTCaaaaaagaaaaagaaaagaaaaaaaggaagtaggaaagAAATTGATGAAATGGAGTTTACAGCTGGAAGTATCAAAATGCTTAGTAATGAAGGAGCTGCATCTGATCCCAAGTGTCAAACAAAACAGCAAACTAAAGAGGATTTAGCCAAACAACACTTTGAACAGGTGCAGTCATTCCGTGGCCATCACAACATTCATATTAGTGGAAGTGACATTCCAGATCCTTTACATCAATTTGAAGATTTAAGTACAAGGTTCAGAATTTCAGAAACCTTAATAGATACAATAAGAGAGGGAGGATATGCCACGCCAACACCAATTCAAATGCAGGCAATATCTGTAATGTTGGAGCAACGTGAACTCTTAGCATGTGCACCTACTGGATCAGGGAAAACATTGGCATTTATAATTCCAATTCTTCATAAGCTTAAGAAACCAAAACGTGACGGGTTTCGAGCCGTGATTATTTCGCCGACGAGAGAATTGGCTCAGCAGATTTATAGAGAATTCTGTCGTATGAATAAAAACATCGGATTTAGAATCCATGTACTGACGAAAGCCAAGGCAACATCGAACTCTTTTGGTGAGAACTCGTCAAAACGCTTCGctataccatcaaaaagaaatgttgcaacaaaaaagattgggaaagatcccgaaatagaaatcagcaaaatgtgtgatactaaaattccagttgtaataggagctcttgcgcgtattagaaaaggaataaatcagggtttttaacaaatacttggtaatattagaatcaaggaactacagaaaaccgtgcttcgtcgaactgcccatttaccaagaaaaactccatccgtgg

Protein

Uniprot

Uniprot term	Description
Q99PT0	Probable ATP-dependent RNA helicase DDX52 OS=Rattus norvegicus OX=10116 GN=Ddx52 PE=2 SV=1
Q8K301	Probable ATP-dependent RNA helicase DDX52 OS=Mus musculus OX=10090 GN=Ddx52 PE=2 SV=2
A5D7C1	Probable ATP-dependent RNA helicase DDX52 OS=Bos taurus OX=9913 GN=DDX52 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR050079	Family	DEAD box RNA helicase	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47959	ATP-DEPENDENT RNA HELICASE RHLE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan