Gene detail

Detailed information of scaffold248.g6.t2 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold248:91177...139374
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold248.g6.t2

agtatactgttttattttggttatgctttttattgattttggcagattgttccataatcgggcacccttgtttcgaaaagttttatcccccccaagttttacacgatttatatatccgataatctatcgcttgccttgtagcatatttgtgtaacccttcatttgtcataaaatagttttggaatacatcaggcagttgatctttattatagtggatgtgatgcattagttttaggatgtttgtttcatagaggtcagctatttttaggatccttaagtttttatgaagaaggttggtggaaaacataaagtctttgaagttcatgattttaagtattctgttttgcaatatctgcaattccttcagatacttatgtgctgctgagccatatatttctaaaccataattaatcttagacaatactaaagaatcaaataaaatgattagacaatctttaggtataaaatgtctaagttttgcaaaaagagatgcaaatttaacgatttcgtttttaattacttaacgcccaaactttgatggttgacaggttcccaaattgaatggtagtcttcataaaacgttgtttgctgatgaatgattgagacatatgaacgtacatcgtgttaaacacagaagctgtacgcacgaatttcatgcagtttctttttcaagcgaggacataatcaaattagtgatgttttggtttcaaagataggaaggacaggaggaattcagcactgttgcaggatcgaagcttctgctctacaaatctcccttgcggcctgaaagagtggaaacataaataaactgcactgtattttctggaaacaaaagacacagaagcaaagagtcaagaaagaaattactgcgaaaggaaaataaaacagtgctgaagcaattactaatatcaagctgtgcatccctgagtcataagatacatttggcagacatctaaagaatacgctgccgaaaaccaaagcgtcatgttgtcggcttgaagtggttttcaccttggctaaagagtttaggcccttgtgggcaaccagaatttggctggccatttcactagtggatcacgacgtgcagaacagtcagttggggaacctttgtcgaatagattcaagaattatttgaagaattaaaagaatttattcaacacaacattcgtttgttgtagtacagacaaaaagattgaaactcacagcaaaacaatttattatcaaatcaaggtcattattatattaggatacaagttaggccactttgtggatgaagaagcatacaaagtttactttcaagcaactaaacatatttcaatcaatgtaaaggtagctgagctgagcctggggatttggaaacaaaacaggaggcaaagatggcatcagaggataaggatggttcatttctgcacaggtttaccatgaagagcaaaaagaaacaaaagaccactaaaggacaaggaggaagtaaaccagacaaagagggagacaggatgagtgcacaacaagaggcagcaatacataaacaagaaatgcaaaaattgagggaactccctgcagatgaatttagcataaaatttgaaaagatgctggatgaaatgaatctgaagactgaccagcagaggaccccattgaggactagagatcctgaagagaaggccaagctactgtatcaatttttaaggacacagaatgaaccgaaacaaaacactggtgcacttgtatcagtgaatgattacattgcggcactacaaaagtcagaatatggcgaggagcttaattacaacttacaatccctgcgtgtttcactgactggtggcttgttgagttggattgaggaatttggagcgaaaggaggactggatatattgctgaatactctacgaagctatgtttgtagttcatctgctttggagcaaaagattcagcatggatgtgcaaaatgtctgaaagctttcatgaacaatgggtttgggttgaatatgatgctgaaaaacagccatggcctaacccttttggcacaatgcattcgactggacaatcctggcatgatgcaagatgtcgtcaaagttatggctgctgttggtctcgttgcacacgacaaggctctggaagcattaacgatgaaggccgaggctgaaaacaagcctcgtttcgttgctgttgtagaggctttgaaaggagatcaggcaccacctttaaagatcgcttgtcttcaactgatcaatgccctagtcagcactccagatgacctcgatttcagacttcatcttcgaaacgagttcatgcgaataggactaacagacgcacttccgctcctgagagaaatcgacacggatgaattgaacgtgcagcttgagatcttcgacgaccagaaagaagaagatgcccttgaatttcaacatcgatttaatgacatctcaattcatttagatgaccccgatgaagtttacaaactggtaaaaacagtaaacaaagatacggcatcagaaaaatatttattgtcagttttgcaacatctactgctgataagagatgatgttttcgccaggcctcagtattttaagctcattgatgaatgcgtatcacaagtggtattacaaagaagtggatatgatccggatttcaaagctaggaagattcagttggatttcgaaaatctaatcgatgttcaaattgacaaagctaaatttgatgcaataaatttgaaattaaagcagcttgaagtaaagctaaaagaagaaacgacacgaagatccgagattgaaacgaaatcagaaatgttggaagaaaagatcaaaacgtatgaaagtgaaatagcaaaattaaaggaacaggtagcgaagggtggaccagctccaagtcaagcaccagcaccaacaggagcaccaccacctccggcacctccacctcctcttggccctggaccaccaccacctccgcctcctccaggagttggaggccctccacctccacccccaccccctgggttctctgggggagcaggccctcctcctccacctccacccccaggaattggtgggcccccgccgccacctccaccaatgatgggaggtggcccacgaccaccaggcccgcccccacctcctggaatgggtggcccaccgcctccaccaggtggcatgatgatggctcggccaatgggccccagtggacttggtcaaaagaagaagtataacacgacagttccgacgaaacgactcaattggaatgcgattcacgcacaaaaattgaaagaacattccttttggacaactttacgcgaagaagaacttgaacggaaggatctgttgggagacatttctgaaatgtttgccacgaaaaagccgcgagagattattacctccggaggagatgtcgatggggaagagaaaaagaaaaagacagaactgaaggtccttgatggcaaaactgcccaaaatctttctatattactgggctctttcaaagttggttatgaagaaatcagagatgcaatttatcgttgtgatgacgcagttatcacagaaaatgttttggcaaatttcatcaaattattgccaaccaatgaacagatacttgatagactgcctttaagatgctgttgggtagacttatgacgatgagtttcttgtttccctgtgctctttgacttcttgatggcgcttcagtcaacagagactcataatattactctgaaaaagttgaccctattaggcctaatatgctgggattcctagcataccaatcagattgcgagatttggcgaagaacaatcagtttcgaaccttcaattcgattgacgcagcttactaaatttgaaggaagttgctgtagcagattcgatcaatcgaatgcagaagatagggtcaggtttttaactgtttcattatgagtccctgtgagcaaggtaccgcagggatacaagggactcatcgtcataagtctagctgttgggcctgctattattatgcgaaaatcgaattacaatggagctattttgattcattctttaccattcgtattttgtaattatgaaattgaaagcgaattgataacattattccttgcatttttgtttcaatacagcttcaacaactcctcaattttaaacacgaatatgaagatttaaatgtggcagaaaaattctcagttcaggttggtggtataccaagattggaacaaagattgaaatgcatggaattaaggatacgatttgctgaagaagttaacgatgccaagcctggaatagtgaatgtcactgaagcctgcagagaagtgagacaaagcaagaaattttcgaaattcctggagctggtcttgttgtgtggtaattacatgaacgctggctcaagaaacgaaagatcatatggatatgatttgagtttactcaccaagctcggaagtacaaaaacagctgatggcaaaatgacattagttcactttctggctaatgcctgtgaggaaaaatatccaaatatcggtggattcgaagatgaactatctcacgtggaacaagcatcaaaatgtaagttaaccacgtgatttgatcaataccgggtgttccaacaaaaattggacagatctggttgggtcctagactgatgatatggtcgtagttatcgctattgaaatactgcaggacgctcctaactacgactcataatcaaacgccattattttgaaatgactatgtctgcctcgtttcgataagggcctaggcacagaaaagcacaaacatttgtagttttcaaatgaaacacattgagttgaaaacttcacaataaatcagttaatgcttagcgaaagcagcaaaatagtacctacgtacaaaatttgatattgtcgccaactgttttcatggtattcttgttcataagactttgttctgtccggccaagctccttgaaactctgctttgagcttcgagtttccgttggtcaacatcaatcaatcgaatttgcagagattctaatggcgttgtatttggttgtatactttgtacatgactctgtatagcagcctcgttcccaaggacgttcaaaagtgaaaaaagtcagtccaaaaatattgccgtaatattatgagtcccagtaagagcggtctcggtctggcgtaatagtctcgttttggatagcgattactgggactcatnnnnnnnn

Transcript

scaffold248.g6.t2

agtatactgttttattttggttatgctttttattgattttggcagattgttccataatcgggcacccttgtttcgaaaagttttatcccccccaagttttacacgatttatatatccgataatctatcgcttgccttgtagcatatttgtgtaacccttcatttgtcataaaatagttttggaatacatcaggcagttgatctttattatagtggatgtgatgcattagttttaggatgtttgtttcatagaggtcagctatttttaggatccttaagtttttatgaagaaggttggtggaaaacataaagtctttgaagttcatgattttaagtattctgttttgcaatatctgcaattccttcagatacttatgtgctgctgagccatatatttctaaaccataattaatcttagacaatactaaagaatcaaataaaatgattagacaatctttaggtataaaatgtctaAGTTTTGCAAAAAGAGATGCAAATTTAACGATTTCGTTTTTAATTACTTAACGCCCAAACTTTGATGGTTGACAGGTTCCCAAATTGAATGGTAGTCTTCATAAAACGTTGTTTGCTGATGAATGATTGAGACATATGAACGTACATCGTGTTAAACACAGAAGCTGTACGCACGAATTTCATGCAGTTTCTTTTTCAAGCGAGGACATAATCAAATTAGTGATGTTTTGGTTTCAAAGATAGGAAGGACAGGAGGAATTCAGCACTGTTGCAGGATCGAAGCTTCTGCTCTACAAATCTCCCTTGCGGCCTGAAAGAGTGGAAACATAAATAAACTGCACTGTATTTTCTGGAAACAAAAGACACAGAAGCAAAGAGTCAAGAAAGAAATTACTGCGAAAGGAAAATAAAACAGTGCTGAAGCAATTACTAATATCAAGCTGTGCATCCCTGAGTCATAAGATACATTTGGCAGACATCTAAAGAATACGCTGCCGAAAACCAAAGCGTCATGTTGTCGGCTTGAAGTGGTTTTCACCTTGGCTAAAGAGTTTAGGCCCTTGTGGGCAACCAGAATTTGGCTGGCCATTTCACTAGTGGATCACGACGTGCAGAACAGTCAGTTGGGGAACCTTTGTCGAATAGATTCAAGAATTATTTGAAGAATTAAAAGAATTTATTCAACACAACATTCGTTTGTTGTAGTACAGACAAAAAGATTGAAACTCACAGCAAAACAATTTATTATCAAATCAAGGTCATTATTATATTAGGATACAAGTTAGGCCACTTTGTGGATGAAGAAGCATACAAAGTTTACTTTCAAGCAACTAAACATATTTCAATCAATGTAAAGGTAGCTGAGCTGAGCCTGGGGATTTGGAAACAAAACAGGAGGCAAAGATGGCATCAGAGGATAAGGATGGTTCATTTCTGCACAGGTTTACCATGAAGAGCAAAAAGAAACAAAAGACCACTAAAGGACAAGGAGGAAGTAAACCAGACAAAGAGGGAGACAGGATGAGTGCACAACAAGAGGCAGCAATACATAAACAAGAAATGCAAAAATTGAGGGAACTCCCTGCAGATGAATTTAGCATAAAATTTGAAAAGATGCTGGATGAAATGAATCTGAAGACTGACCAGCAGAGGACCCCATTGAGGACTAGAGATCCTGAAGAGAAGGCCAAGCTACTGTATCAATTTTTAAGGACACAGAATGAACCGAAACAAAACACTGGTGCACTTGTATCAGTGAATGATTACATTGCGGCACTACAAAAGTCAGAATATGGCGAGGAGCTTAATTACAACTTACAATCCCTGCGTGTTTCACTGACTGGTGGCTTGTTGAGTTGGATTGAGGAATTTGGAGCGAAAGGAGGACTGGATATATTGCTGAATACTCTACGAAGCTATGTTTGTAGTTCATCTGCTTTGGAGCAAAAGATTCAGCATGGATGTGCAAAATGTCTGAAAGCTTTCATGAACAATGGGTTTGGGTTGAATATGATGCTGAAAAACAGCCATGGCCTAACCCTTTTGGCACAATGCATTCGACTGGACAATCCTGGCATGATGCAAGATGTCGTCAAAGTTATGGCTGCTGTTGGTCTCGTTGCACACGACAAGGCTCTGGAAGCATTAACGATGAAGGCCGAGGCTGAAAACAAGCCTCGTTTCGTTGCTGTTGTAGAGGCTTTGAAAGGAGATCAGGCACCACCTTTAAAGATCGCTTGTCTTCAACTGATCAATGCCCTAGTCAGCACTCCAGATGACCTCGATTTCAGACTTCATCTTCGAAACGAGTTCATGCGAATAGGACTAACAGACGCACTTCCGCTCCTGAGAGAAATCGACACGGATGAATTGAACGTGCAGCTTGAGATCTTCGACGACCAGAAAGAAGAAGATGCCCTTGAATTTCAACATCGATTTAATGACATCTCAATTCATTTAGATGACCCCGATGAAGTTTACAAACTGGTAAAAACAGTAAACAAAGATACGGCATCAGAAAAATATTTATTGTCAGTTTTGCAACATCTACTGCTGATAAGAGATGATGTTTTCGCCAGGCCTCAGTATTTTAAGCTCATTGATGAATGCGTATCACAAGTGGTATTACAAAGAAGTGGATATGATCCGGATTTCAAAGCTAGGAAGATTCAGTTGGATTTCGAAAATCTAATCGATGTTCAAATTGACAAAGCTAAATTTGATGCAATAAATTTGAAATTAAAGCAGCTTGAAGTAAAGCTAAAAGAAGAAACGACACGAAGATCCGAGATTGAAACGAAATCAGAAATGTTGGAAGAAAAGATCAAAACGTATGAAAGTGAAATAGCAAAATTAAAGGAACAGGTAGCGAAGGGTGGACCAGCTCCAAGTCAAGCACCAGCACCAACAGGAGCAccaccacctccggcacctccacctcctcttggccctggaccaccaccacctccgcctcctccaggagttggaggccctccacctccacccccacccccTGGGTTCTCTGGGGGAGCAGGCCCTCCTCCTCCACCTCCACCCCCAGGAATTGGTGGGCCCCCGCCGCCACCTCCACCAATGATGGGAGGTGGCCCACGACCACCAGGCCCGCCCCCACCTCCTGGAATGGGTGGCCCACCGCCTCCACCAGGTGGCATGATGATGGCTCGGCCAATGGGCCCCAGTGGACTTGGTCAAAAGAAGAAGTATAACACGACAGTTCCGACGAAACGACTCAATTGGAATGCGATTCACGCACAAAAATTGAAAGAACATTCCTTTTGGACAACTTTACGCGAAGAAGAACTTGAACGGAAGGATCTGTTGGGAGACATTTCTGAAATGTTTGCCACGAAAAAGCCGCGAGAGATTATTACCTCCGGAGGAGATGTCGATGGGGAAGAGAAAAAGAAAAAGACAGAACTGAAGGTCCTTGATGGCAAAACTGCCCAAAATCTTTCTATATTACTGGGCTCTTTCAAAGTTGGTTATGAAGAAATCAGAGATGCAATTTATCGTTGTGATGACGCAGTTATCACAGAAAATGTTTTGGCAAATTTCATCAAATTATTGCCAACCAATGAACAGatacttgatagactgcctttaaGATGCTGTTGGGtagacttatgacgatgagtttcttgtttccctgtgctctttgacttcttgatggcgcttcagtcaacagagactcataatattactctgaaaaagttgaccctattaggcctaatatgctgggattcctagcataccaatcagattgcgagatttggcgaagaacaatcagtttcgaaccttcaattcgattgacgcagcttactaaatttgaaggaagttgctgtagcagattcgatcaatcgaatgcagaagatagggtcaggtttttaactgtttcattatgagtccctgtgagcaaggtaccgcagggatacaagggactcatcgtcataagtctaGCTGTTGGGCCTGCTATTATTATGCGAAAATCGAATTACAATGGAGCTATTTTGATTCATTCTTTACCATTCGTATTTTGTAATTATGAAATTGAAAGCGAATTGATAACATTATTCCTTGCATTTTTGTTTCAATACAGCTTCAACAACTCCTCAATTTTAAACACGAATATGAAGATTTAAATGTGGCAGAAAAATTCTCAGTTCAGGTTGGTGGTATACCAAGATTGGAACAAAGATTGAAATGCATGGAATTAAGGATACGATTTGCTGAAGAAGTTAACGATGCCAAGCCTGGAATAGTGAATGTCACTGAAGCCTGCAGAGAAGTGAGACAAAGCAAGAAATTTTCGAAATTCCTGGAGCTGGTCTTGTTGTGTGGTAATTACATGAACGCTGGCTCAAGAAACGAAAGATCATATGGATATGATTTGAGTTTACTCACCAAGCTCGGAAGTACAAAAACAGCTGATGGCAAAATGACATTAGTTCACTTTCTGGCTAATGCCTGTGAGGAAAAATATCCAAATATCGGTGGATTCGAAGATGAACTATCTCACGTGGAACAAGCATCAAAATGTAAGTTAACCACGTGATTTGATCAATACCGGGTGTTCCAACAAAAATTGGACAGATCTGGTTGGGTCCtagactgatgatatggtcgtagttatcgctattgaaatactgcaggacgctcctaactacgactcataatcaaacgccattattttgaaatgactatgtctgcctcgtttcgataagggcctaggcacagaaaagcacaaacatttgtagttttcaaatgaaacacattgagttgaaaacttcacaataaatcagttaatgcttagcgaaagcagcaaaatagtacctacgtacaaaatttgatattgtcgccaactgttttcatggtattcttgttcataagactttgttctgtccggccaagctccttgaaactctgctttgagcttcgagtttccgttggtcaacatcaatcaatcgaatttgcagagattctaatggcgttgtatttggttgtatactttgtacatgactctgtatagcagcctcgttcccaaggacgttcaaaagtgaaaaaagtcagtccaaaaatattgccgtaatattatgagtcccagtaagagcggtctcggtctggcgtaatagtctcgttttggatagcgattactgggactcatNNNNNNNN

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02181 all species →	FH2	Formin Homology 2 Domain	Family	Interproscan
PF06367 all species →	Drf_FH3	Diaphanous FH3 Domain	Repeat	Interproscan
PF06371 all species →	Drf_GBD	Diaphanous GTPase-binding Domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR044933 all species →	Homologous_superfamily	Diaphanous, GTPase-binding domain superfamily	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR010472 all species →	Domain	Formin, FH3 domain	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR014768 all species →	Domain	Rho GTPase-binding/formin homology 3 (GBD/FH3) domain	Interproscan
IPR010473 all species →	Domain	Formin, GTPase-binding domain	Interproscan
IPR051412 all species →	Family	Formin Homology Diaphanous subfamily	Interproscan
IPR015425 all species →	Domain	Formin, FH2 domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45691 all species →	PROTEIN DIAPHANOUS	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003779 all species →	Molecular Function	actin binding	Interproscan
GO:0016043 all species →	Biological Process	cellular component organization	Interproscan
GO:0030036 all species →	Biological Process	actin cytoskeleton organization	Interproscan
GO:0031267 all species →	Molecular Function	small GTPase binding	Interproscan
GO:0005884 all species →	Cellular Component	actin filament	Interproscan
GO:0030041 all species →	Biological Process	actin filament polymerization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold248.g6.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.