Gene detail

Detailed information of scaffold253.g7.t1 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold253:161420...209564
NR annotation: no NCBI-NR hit recorded
Species abbreviation AAURI2 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold253.g7.t1

ctgatttgtttggttcatgtgagtttgttgtggcaaaaattaagtttctatatcgttacctcgtctctttggagaaagctgaatgttgtcgaagagttttggttcataatccatgtacttattgttcaacgcttctgcgaaagtgcagggctcttctgcttcttccaccatttttgctgtgatcttgaaggagtctcgtgttctaattgatccaagttttcacttcaatcaggtgcatttggcgagggatcacgacaagaatgaaggtacctgaattggctgaattcgtaccaaaaatatgtcgccaattttttttgtaactgcaaagcattcaaaaccaggagaaaaacaatgccatgtgacaacgtactcgcaattttattggctctttgattatcagtctcgagtgacagccaatcaaatttaagcattacgtcatgtcacaggggagcgaggctaattgattaaatttaccaccgagatttcataagtttacgtcatatcacagggaaacaaggatgtatgattacttttgggcctaaatctttctttcggtcctcgataacctggcaagcttgcagatggttccagcttccgtgcacgcgtttggagcaaagatcgcattctatccaactttgctgtggaatatatttcgtgcaggaattgacagaaactggtatgatcgaatagatgaaacgatcatacttggggccttgccatttcgaagcacagctcgcaaggttgctgcagatgaaaatgtcaggggtgtggtaactttgaatcaaggctttgaaataaaacatttttcaccaagtagagaggaatggcttgatcttggagtaaaacagctatggattccaacattagattttgatgcagctccgtcagttgaagatattgagaagggtatagactttataaattcattcaaggaacgaaatgaaagtgtttatgttcattgcaaagctggaagaggaagaagtgcattgcttgttgtttgttacttaataaaggaaaatggtatgcgtgcaactgaagcttttgactttgtcaaatcgaagagaagtcatgtaatgctttgggcaaatcaaagacgtcgagttgaagagttcaaacatttagtcgataagcaagatggacaatgaatattcgtcacttggtgtatttccttctgtaagtttccctttgaaggagccctactatgtttactctttagttatgccgttggggatacttcattggtctttttaatgatcttcccctctccttaatgagagcctacccttaaggtcgaagctgaagtgagttccttcagtaggattgatgttggaagaataggcaatcttagtcgcagataggtttaaaatatgaaagatttgtaccatcaagcactatccacctgtaagcccttaaaagtctctctcttcatcatggtatataatgcgatgctcagatcaagggtgcctaccttgtaggaagtgtgtttattcccagtacacacagtgacccagtacacagagtaattggtgtcctgtggcccagtacacagaacaattgaagccctgttaatctgtaaggattttcaaattctaacgtctgttaatgttgtccaataaaaaatcacgctgtctggttccctgtggccaacttgtataacagttgatctcgtattacatcaacaccggaatttgaaaccacaaagttattcataagtcatgttgaccttgacaggactgattctgtgtactgggtcacggtacagtagtggaaataaacacagttcctacaaggtaggcgcccttgctcagattagagaaaacaaagccattgtcatattgttctcagactcttccaatctcatcttggttaggttacagttttgcagattcaaaggtttcgcccgtagtttttcaagtctactgctgatgaatttaccattatcgcatattattttctaattcttgttgaagattataaccaagttgtgtgatgattacttgtagaaataacttctcagagatttttaaatttgaatacctcctatgtttaattactgcactgttttgctaaatctttccctgttatccgttaatatggtacactgtaaaagccagaccatagtatcctcagaaccaagatatttaaacgccagtaggaaataggggtgatcagcctaatcacaaggtccagaattcttaagagttcattggaagttttcacattctgataagaatccttgagtcagttgaaaggctatgactttgctacgagaattcttacaacgaatcaacggagataaaatcccgcgtggaaggagtctgggtattgtatcattagcctattttatttgattattttgacacgtacatggttattagttaacaagagtaataataacgtgtgtatgaatttttttttacctcccctttactccgttcatagtttaaggaactaaaaacattctcaagaattccatgttaatttgtgcaaagcatgtactgtacatgacgcacccctaccatagtttggctttaagttcatgcaccatagtacgtctttgcagcaaaaccatcaagcagttctctttgcaattattttgtaaatgtaaatgtatatggctttgttttggtaaaagaataccatcaatacattaacagtgtgtaa

Transcript

scaffold253.g7.t1

CTGATTTGTTTGGTTCATGTGAGTTTGTTGTGGCAAAAATTAAGTTTCTATATCGTTACCTCGTCTCTTTGGAGAAAGCTGAATGTTGTCGAAGAGTTTTGGTTCATAATCCATGTACTTATTGTTCAACGCTTCTGCGAAAGTGCAGGGCTCTTCTGCTTCTTCCACCATTTTTGCTGTGATCTTGAAGGAGTCTCGTGTTCTAATTGATCCAAGTTTTCACTTCAATCAGGTGCATTTGGCGAGGGATCACGACAAGAATGAAGGTACCTGAATTGGCTGAATTCGTACCAAAAATATGTCGCCAATTTTTTTTGTAACTGCAAAGCATTCAAAACCAGGAGAAAAACAATGCCATGTGACAACGTACTCGCAATTTTATTGGCTCTTTGATTATCAGTCTCGAGTGACAGCCAATCAAATTTAAGCATTACGTCATGTCACAGGGGAGCGAGGCTAATTGATTAAATTTACCACCGAGATTTCATAAGTTTACGTCATATCACAGGGAAACAAGGATGTATGATTACTTTTGGGCCTAAATCTTTCTTTCGGTCCTCGATAACCTGGCAAGCTTGCAGATGGTTCCAGCTTCCGTGCACGCGTTTGGAGCAAAGATCGCATTCTATCCAACTTTGCTGTGGAATATATTTCGTGCAGGAATTGACAGAAACTGGTATGATCGAATAGATGAAACGATCATACTTGGGGCCTTGCCATTTCGAAGCACAGCTCGCAAGGTTGCTGCAGATGAAAATGTCAGGGGTGTGGTAACTTTGAATCAAGGCTTTGAAATAAAACATTTTTCACCAAGTAGAGAGGAATGGCTTGATCTTGGAGTAAAACAGCTATGGATTCCAACATTAGATTTTGATGCAGCTCCGTCAGTTGAAGATATTGAGAAGGGTATAGACTTTATAAATTCATTCAAGGAACGAAATGAAAGTGTTTATGTTCATTGCAAAGCTGGAAGAGGAAGAAGTGCATTGCTTGTTGTTTGTTACTTAATAAAGGAAAATGGTATGCGTGCAACTGAAGCTTTTGACTTTGTCAAATCGAAGAGAAGTCATGTAATGCTTTGGGCAAATCAAAGACGTCGAGTTGAAGAGTTCAAACATTTAGTCGATAAGCAAGATGGACAATGAATATTCGTCACTTGGTGTATTTCCTTCTGTAAGTTTCCCTTTGAAGGAGCCCTACTATGTTTACTCTTTAGTTATGCCGTTGGGGATACTTCATTGGTCTTTTTAATGATCTTCCCCTCTCCTTAATGAGAGCCTACCCTTAAGGTCGAAGCTGAAGTGAGTTCCTTCAGTAGGATTGATGTTGGAAGAATAGGCAATCTTAGTCGCAGATAGGTTTAAAATATGAAAGATTTGTACCATCAAGCACTATCCACCTGTAAGCCCTTAAAAGTCTCTCTCTTCATCATGGTATATAATGCGATGCTCAGatcaagggtgcctaccttgtaggaagtgtgtttattcccagtacacacagtgacccagtacacagagtaattggtgtcctgtggcccagtacacagaacaattgaagccctgttaatctgtaaggattttcaaattctaacgtctgttaatgttgtccaataaaaaatcacgctgtctggttccctgtggccaacttgtataacagttgatctcgtattacatcaacaccggaatttgaaaccacaaagttattcataagtcatgttgaccttgacaggactgattctgtgtactgggtcacggtacagtagtggaaataaacacagttcctacaaggtaggcgcccttgCTCAGATTAGAGAAAACAAAGCCATTGTCATATTGTTCTCAGACTCTTCCAATCTCATCTTGGTTAGGTTACAGTTTTGCAGATTCAAAGGTTTCGCCCGTAGTTTTTCAAGTCTACTGCTGATGAATTTACCATTATCGCATATTATTTTCTAATTCTTGTTGAAGATTATAACCAAGTTGTGTGATGATTACTTGTAGAAATAACTTCTCAGAGATTTTTAAATTTGAATACCTCCTATGTTTAATTACTGCACTGTTTTGCTAAATCTTTCCCTGTTATCCGTTAATATGGTACACTGTAAAAGCCAGACCATAGTATCCTCAGAACCAAGATATTTAAACGCCAGTAGGAAATAGGGGTGATCAGCCTAATCACAAGGTCCAGAATTCTTAAGAGTTCATTGGAAGTTTTCACATTCTGATAAGAATCCTTGAGTCAGTTGAAAGGCTATGACTTTGCTACGAGAATTCTTACAACGAATCAACGGAGATAAAATCCCGCGTGGAAGGAGTCTGGGTATTGTATCATTAGCCTATTTTATTTGATTATTTTGACACGTACATGGTTATTAGTTAACAAGAGTAATAATAACGTGTGTATGAATTTTTTTTTACCTCCCCTTTACTCCGTTCATAGTTTAAGGAACTAAAAACATTCTCAAGAATTCCATGTTAATTTGTGCAAAGCATGTACTGTACATGACGCACCCCTACCATAGTTTGGCTTTAAGTTCATGCACCATAGTACGTCTTTGCAGCAAAACCATCAAGCAGTTCTCTTTGCAATTATTTTGTAAATGTAAATGTATATGGCTTTGTTTTGGTAAAAGAATACCATCAATACATTAACAGTGTGTAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00782 all species →	DSPc	Dual specificity phosphatase, catalytic domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000387 all species →	Domain	Tyrosine-specific protein phosphatases domain	Interproscan
IPR044596 all species →	Family	Phosphatidylglycerophosphatase and protein-tyrosine phosphatase 1-like	Interproscan
IPR020422 all species →	Domain	Dual specificity protein phosphatase domain	Interproscan
IPR042165 all species →	Family	Phosphatidylglycerophosphatase and protein-tyrosine phosphatase 1	Interproscan
IPR000340 all species →	Domain	Dual specificity phosphatase, catalytic domain	Interproscan
IPR016130 all species →	Active_site	Protein-tyrosine phosphatase, active site	Interproscan
IPR029021 all species →	Homologous_superfamily	Protein-tyrosine phosphatase-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46712 all species →	PHOSPHATIDYLGLYCEROPHOSPHATASE AND PROTEIN-TYROSINE PHOSPHATASE 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016311 all species →	Biological Process	dephosphorylation	Interproscan
GO:0004721 all species →	Molecular Function	phosphoprotein phosphatase activity	Interproscan
GO:0006470 all species →	Biological Process	protein dephosphorylation	Interproscan
GO:0004439 all species →	Molecular Function	phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	Interproscan
GO:0008962 all species →	Molecular Function	phosphatidylglycerophosphatase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold253.g7.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.