Gene detail

Detailed information of scaffold254.g2.t1 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold254:16373...31104
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold254.g2.t1

catcaccactcagaaagcatctacagtttgagcaaaaaataagtttcaaaatttgaaggaatactgaccaacaaagcaaagtacagcatcaaacgtgccaaagaattcttctcctctttgcttctggctacgatcaatgcttttcagctctttgcttttctgctcaactggctcgtctgatgccttaaatagccttcatggttgcaaccaatgacgaaatcagctatgtggcattttcttgctgtctattcttcttcagattattagccaaaagaggccctcgaaaaattttgttttgttttgtttatgtcatttctattttcgtgatgtttccctgtgttccagcctcccttgcaaatacgtttcgaaatagactcgaggcaaatcccaccgttagctatgtcgttcccaggccacaattatcatgaggaatgttttggcggcaaattgagcctgaatacaatcaaaccagtgaacatggaacaaaccagaagaaacaaacgcggaacaaacaaacaaagccctggccttgtatcacatcacactgaccagcacagtgtggtgcacaaccattgtgaatattggacgttgaactttgtgacgaaatcttgtgcaacaaaacaagaccaggtgaatcagtccagtttcatatttcagccccttctcgaccaaatggaaagatccttcttacattacagcgagaggagtcgctccagaaatacccttttttggatggttagacgttgaatgatcgaagcgaagcagccatgaatgtgataatggatgtgatcaccatcttgttggaacactgggtcctaactacaatccttacactcacagctcttctttattggcactatgttgcaaatttttcagagttgaaaaaacttggctttcctggaccaactccctggcctattcttggaaatttagtaaatgtcatgtctaacaaaggactgcatatttttttacaaattgcaaaagagaaatacggcaaagtttttggggtatatttcctgaaatatcccagcattgtggtgcatgaccctgaaatactgaaatgtgtattagtgaaagattttgacaaatttcaggacaggacaaagcctggatttaaactagatgagccttttgcaagctttcttacaacacttgaaggacaaaggtggaaaaatgtcagaaatattctaacaccaacgtttacatcaggaaaattgaagcaaatgacaacaatgatacatgatgcagctgacactctgctgggcaaggtggaaaaagctgcagatgagcaaaaagcgtttgatgtatatgaatggcaacaaggtgtcacaatggaagtcatactctctactgccttcggtgtgaaaacagaatcacaaaccaaccctgatgattatttgatgaatttatcaaagaaggctatggaaagacaattgccgattttaatcgcatcaatgattccattcatcggccaatggataactaagaagcttgcagcttctcgatttggttgtagcaagaccaaactatttggcgtagctagagagattatcgaaggaagaaagaatattgcagtggagtgtcagcgaaaggacatgctgaatctgatgttagctgctcaagatccagaaaacaagggccacaaactgaccgacaatgaaatgattgctcaaatggtattgttcattctggctggttacgaatcaaccagtaatacccttgctctcacctgctacaatcttacgatatttcctgaattacaggaaagggttctaaaagagatcaaagatgtctgcagctcacaagatacttgcacatacgatgaaattaatcaaatgccgtacttagacgcctgcatttctgaaacgcttcgtctttaccctccagctgttgttacagcaagaaattgcttggaatcttgtacaataaatggagtaaacttcaagaagggagtggctgtgcttattccaatatacagtcttcatcacgatgcagcatactttccggaaccggaagcattcaagccggaacgctttctccccgagaacaaagaatcgatcaatcagttcgcctacatgccttttggtatgggcccgaggaattgcattggcatgcgcttagctttaatggaggtgaaacttgtacttgtgcgcattcttcaacagtaccggcttgtcaggtgtccggagactccagcattgccactgacgttggtacagaggacaacactctgccctaaagagccagtcatgatccaggcgaaaaagagaaattgatttacgagtttttagggatagtttagttattacgacagagaggtttgtcgacgaacatatagagggttatagtactacagagtgtttcagagacgcaacccaaccacagggtgtcccaaaaaaaaaattgtgccccgtttacctgaagattgtgacgaaacggcaaaggattctcgccaaaattttctgtgatgttgctcttcagattttcaaataaagtttgctgccatccccgtaaaaatccgttggaaaatgatggagctatgtccttcaggagaccaaatttgtctgatgactcaaaccagcggtcggccgccattttgtcttagtattttacagtgataaatagctccatggatgaaatgaagcagcagcctccaatttcatggctctcgtgaaaattctgataatcatcagagagttttcaactatttgttacctcacagaaactatttcttacctctcacaaagctatgtatcactgcaaaatagtaagacaaaatggccgactgctggttcagtcatcaggcaaatttggtctactgaaggtcacacacagctccatcatttttcaacggatttttatgggaatggtagcaaactttaattgagtatctgaagaacaacatcattcataaatttcgcgagaaactttcgccgttttgatgccatcttcagacaaacggggcacaattttttgggacaccctgtttataattaaggttactgtaaccgttcaggcggcgattaagaaactcagtttaccacggccgttcgtcaaaatataccaaacaaacttctgcatcattcgacgcagaattaaatgtatattatcataacgatatattcagttgattcaacaaaatcacgaatgatttattctagatttaaggcaaaatcgaccacctttgcgaaaaaatctttgtgtaccccaatgataatcgttggaccacgactatctttttatcaaagacttaaggccctgaactgcaaaactgtgtcacaaatttttgataaaaggtattgtcttgaaatgatatcattttaaataaatgtaaatgtcttaaatgtcttttttacctttcagacccttgttttttttttttttttttttttttttattgtgactctgtgtgccaagtttcaagcgattcgattggcctgttgggtacacaaagattttttattacccaccagtactcgggaatcctgtttcgagaaatcaggcttttatcaaaatgaagcaaaaattgcgggaaatatgattatgcatgaaaggtcaagcaataaggcttaagtgtggtcttggtaaagcattatgtcaataacatagcagcacgggatgtcataaacatagctgcaaggtcaagtgagtttactttaatcccctaatgtatattcccgcaatttttgagaaacaggattgctccttttaaagtgctcaaaattctaagtaattgtgactatttctggaagtgagttggtttaaacagtcctaaaatacttataccatcagattatgacaaaaacgaaaaatcgaaaatttgtcgtctgaacagttacagtaaccttaaatatttttagcatgtgataaggtgtaccttctgaaagcacaagctatcttctttccaacagtatgcagttcagatgcatcaaaggaattatttatcatttaatgatattcggatggccagtttcgaatgcagcacgctgtaagagcaaaatcaaaacatcttttaccg

Transcript

scaffold254.g2.t1

CATCACCACTCAGAAAGCATCTACAGTTTGAGCAAAAAATAAGTTTCAAAATTTGAAGGAATACTGACCAACAAAGCAAAGTACAGCATCAAACGTGCCAAAGAATTCTTCTCCTCTTTGCTTCTGGCTACGATCAATGCTTTTCAGCTCTTTGCTTTTCTGCTCAACTGGCTCGTCTGATGCCTTAAATAGCCTTCATGGTTGCAACCAATGACGAAATCAGCTATGTGGCATTTTCTTGCTGTCTATTCTTCTTCAGATTATTAGCCAAAAGAGGCCCTCGAAAAAttttgttttgttttgtttatgtcatttctattttcgtgatgtttCCCTGTGTTCCAGCCTCCCTTGCAAATACGTTTCGAAATAGACTCGAGGCAAATCCCACCGTTAGCTATGTCGTTCCCAGGCCACAATTATCATGAGGAATGTTTTGGCGGCAAATTGAGCCTGAATACAATCAAACCAGTGAACATGGaacaaaccagaagaaacaaacgcggaacaaacaaacaaaGCCCTGGCCTTGTATCACATCACACTGACCAGCACAGTGTGGTGCACAACCATTGTGAATATTGGACGTTGAACTTTGTGACGAAATCTTGTGCAACAAAACAAGACCAGGTGAATCAGTCCAGTTTCATATTTCAGCCCCTTCTCGACCAAATGGAAAGATCCTTCTTACATTACAGCGAGAGGAGTCGCTCCAGAAATACCCTTTTTTGGATGGTTAGACGTTGAATGATCGAAGCGAAGCAGCCATGAATGTGATAATGGATGTGATCACCATCTTGTTGGAACACTGGGTCCTAACTACAATCCTTACACTCACAGCTCTTCTTTATTGGCACTATGTTGCAAATTTTTCAGAGTTGAAAAAACTTGGCTTTCCTGGACCAACTCCCTGGCCTATTCTTGGAAATTTAGTAAATGTCATGTCTAACAAAGGACTGCATATTTTTTTACAAATTGCAAAAGAGAAATACGGCAAAGTTTTTGGGGTATATTTCCTGAAATATCCCAGCATTGTGGTGCATGACCCTGAAATACTGAAATGTGTATTAGTGAAAGATTTTGACAAATTTCAGGACAGGACAAAGCCTGGATTTAAACTAGATGAGCCTTTTGCAAGCTTTCTTACAACACTTGAAGGACAAAGGTGGAAAAATGTCAGAAATATTCTAACACCAACGTTTACATCAGGAAAATTGAAGCAAATGACAACAATGATACATGATGCAGCTGACACTCTGCTGGGCAAGGTGGAAAAAGCTGCAGATGAGCAAAAAGCGTTTGATGTATATGAATGGCAACAAGGTGTCACAATGGAAGTCATACTCTCTACTGCCTTCGGTGTGAAAACAGAATCACAAACCAACCCTGATGATTATTTGATGAATTTATCAAAGAAGGCTATGGAAAGACAATTGCCGATTTTAATCGCATCAATGATTCCATTCATCGGCCAATGGATAACTAAGAAGCTTGCAGCTTCTCGATTTGGTTGTAGCAAGACCAAACTATTTGGCGTAGCTAGAGAGATTATCGAAGGAAGAAAGAATATTGCAGTGGAGTGTCAGCGAAAGGACATGCTGAATCTGATGTTAGCTGCTCAAGATCCAGAAAACAAGGGCCACAAACTGACCGACAATGAAATGATTGCTCAAATGGTATTGTTCATTCTGGCTGGTTACGAATCAACCAGTAATACCCTTGCTCTCACCTGCTACAATCTTACGATATTTCCTGAATTACAGGAAAGGGTTCTAAAAGAGATCAAAGATGTCTGCAGCTCACAAGATACTTGCACATACGATGAAATTAATCAAATGCCGTACTTAGACGCCTGCATTTCTGAAACGCTTCGTCTTTACCCTCCAGCTGTTGTTACAGCAAGAAATTGCTTGGAATCTTGTACAATAAATGGAGTAAACTTCAAGAAGGGAGTGGCTGTGCTTATTCCAATATACAGTCTTCATCACGATGCAGCATACTTTCCGGAACCGGAAGCATTCAAGCCGGAACGCTTTCTCCCCGAGAACAAAGAATCGATCAATCAGTTCGCCTACATGCCTTTTGGTATGGGCCCGAGGAATTGCATTGGCATGCGCTTAGCTTTAATGGAGGTGAAACTTGTACTTGTGCGCATTCTTCAACAGTACCGGCTTGTCAGGTGTCCGGAGACTCCAGCATTGCCACTGACGTTGGTACAGAGGACAACACTCTGCCCTAAAGAGCCAGTCATGATCCAGGCGAAAAAGAGAAATTGATTTACGAGTTTTTAGGGATAGTTTAGTTATTACGACAGAGAGGTTTGTCGACGAACATATAGAGGGTTATAGTACTACAGAGTGTTTCAGAGACGCAACCCAACCacagggtgtcccaaaaaaaaaattgtgccccgtttacctgaagattgtgacgaaacggcaaaggattctcgccaaaattttctgtgatgttgctcttcagattttcaaataaagtttgctgccatccccgtaaaaatccgttggaaaatgatggagctatgtccttcaggagaccaaatttgtctgatgactcaaaccagcggtcggccgccattttgtcttagtattttacagtgataaatagctccatggatgaaatgaagcagcagcctccaatttcatggctctcgtgaaaattctgataatcatcagagagttttcaactatttgttacctcacagaaactatttcttacctctcacaaagctatgtatcactgcaaaatagtaagacaaaatggccgactgctggttcagtcatcaggcaaatttggtctactgaaggtcacacacagctccatcatttttcaacggatttttatgggaatggtagcaaactttaattgagtatctgaagaacaacatcattcataaatttcgcgagaaactttcgccgttttgatgccatcttcagacaaacggggcacaattttttgggacaccctgtTTATAAttaaggttactgtaaccgttcaggcggcgattaagaaactcagtttaccacggccgttcgtcaaaatataccaaacaaacttctgcatcattcgacgcagaattaaatgtatattatcataacgatatattcagttgattcaacaaaatcacgaatgatttattctagatttaaggcaaaatcgaccacctttgcgaaaaaatctttgtgtaccccaatgataatcgttggaccacgactatctttttatcaaagacttaaggccctgaactgcaaaactgtgtcacaaatttttgataaaaggtattgtcttgaaatgatatcattttaaataaatgtaaatgtcttaaatgtcttttttacctttcagacccttgttttttttttttttttttttttttttattgtgactctgtgtgccaagtttcaagcgattcgattggcctgttgggtacacaaagattttttattacccaccagtactcgggaatcctgtttcgagaaatcaggcttttatcaaaatgaagcaaaaattgcgggaaatatgattatgcatgaaaggtcaagcaataaggcttaagtgtggtcttggtaaagcattatgtcaataacatagcagcacgggatgtcataaacatagctgcaaggtcaagtgagtttactttaatcccctaatgtatattcccgcaatttttgagaaacaggattgctccttttaaagtgctcaaaattctaagtaattgtgactatttctggaagtgagttggtttaaacagtcctaaaatacttataccatcagattatgacaaaaacgaaaaatcgaaaatttgtcgtctgaacagttacagtaaccttaaATATTTTTAGCATGTGAtaaggtgtaccttctgaaagcacaagctatcttctttccaacagtatgcagttcagatgcatcaaaggaattatttatcatttaatgatattcggatggccagtttcgaatgcagcacgctgtaagagcaaaatcaaaacatcttttaccg

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00067 all species →	p450	Cytochrome P450	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036396 all species →	Homologous_superfamily	Cytochrome P450 superfamily	Interproscan
IPR002401 all species →	Family	Cytochrome P450, E-class, group I	Interproscan
IPR050705 all species →	Family	Cytochrome P450 3A	Interproscan
IPR001128 all species →	Family	Cytochrome P450	Interproscan
IPR017972 all species →	Conserved_site	Cytochrome P450, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24302 all species →	CYTOCHROME P450 FAMILY 3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004497 all species →	Molecular Function	monooxygenase activity	Interproscan
GO:0005506 all species →	Molecular Function	iron ion binding	Interproscan
GO:0016705 all species →	Molecular Function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	Interproscan
GO:0020037 all species →	Molecular Function	heme binding	Interproscan
GO:0008395 all species →	Molecular Function	steroid hydroxylase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K07424	CYP3A; cytochrome P450 family 3 subfamily A	EC:1.14.14.1	Cytochrome P450	ko00199	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.