Gene detail

Detailed information of scaffold255.g22.t1 in Morbakka virulenta

Genomic Location: scaffold255:932869...945239
NR annotation: XP_020623090.1, small ubiquitin-related modifier 1-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

scaffold255.g22.t1

CAGTAAGAGACCTTAAACTAGCTGCAGAAGCTCTTCTGAAAACTCGTGTGTTGAGAAACAGCCGAAAGAAAAACAAGTTGGTGGCGTTAACTTGAAGTTAACCAAAATATAAAAAGATGAGTGAAAATAACGAAGTTAAACCAGAGTCGGAACATATCAATCTCAAAGTAATGGGGGCTGATAACTCAGAAGTTCATTTCAAAATTAAGAAAACAACACAGCTAAAAAAACTGAAACAAGCATACTGTGACAGACAAGGAATGCCCATGAATTCTTTAAGGTTTCTCTTTGATGGAAACAGAATTACGGATGAAATGACACCAAAACAGCTGGAGATGGAAGAAGATGATGTTATCGAAGTCTATCAGGAGCAAACAGGAGGGGAATAAAAAAAATCGTTATGAAATAATTGATCGTTTATTGTTCATTCTTGGCTGAAAATGACCACGTGATTAAATAACCATCTGAAGAGAAACTGGGCCAAAGACATAAGATGTACACAGATCCTCCGCTTTATGAGTTATTCTGCATTTACTTCACTCTGTTAAATGATACGAATTCAGTGTTTGTACATTGGTATGTCATATAAATATCTTATTACAAGATGCCCCAGTTCAATCCTTCTTGGAATTTTTGGAAAAGTTTATTAGTAGACGTGGTATTGACGCAGGTCTTTGCCTGCTACGTTTTTTTTCACTTCTGTTAAAGCTTCGAATATGGGTAGGTGGGTGGGTAGGCTGTTTCTTATGACAGACAACAGTAGTTCAGTACCCTTTTTTATTGCATGGTCACTAGGTTCGTACAAATATACATTTTAGGGGAGTTATTTTATCCCCCACCACGACGGTTGTGATTTTTGTAAGTTAGGAGCCCCATTTCGGAATAGTTAGCATGACGTGAATGGTAATGAATGCCAGTTTCTTTCCGCAGACACTGGTTTTATGCGGTAGAATTGTTAATGATATATAGTTCAAATATATCGGAAAAGAAGTAGGATACTTGTACAAGGTTGAACTTAGTGGAGTATTTTTAATCGCCAAGGGTCTATTGTAAAAAGGTGAGATTCTCATGTCTGATATCACTAGATGGATTGGTTCTTATTGTTTATTACCTGTCATAAAAGATGGTATCGAGCACTGTAGTTTCCTTTACTGTCTACTGTAAGTAAGCGTGGGCATTCATGTTTTATTCCACACTTTAACATTTTTATTGAAATCAAGATGCACTTTTTTGTTTTCCATAATACGCCGCGCTCTTCGTTTCTGTGTAGTTCTACAAAGTCTCTTAAACAGCACCTTAGGATTTTCTGTTTTTTTTGTTTAGGTTGGCCACGACCTTGTTTGAAGAGTATAGCGCCATTTCTGGCGTAAAAAAGGTTACGGGTGTGGGGTACGAGTTCGGAGCGTGTTATTTATTTCAGATTATCTAGTTTATAAACTCTTAGTAAATCAAAACTGTTTGCTTTATTCAGTTCAAGCAAGCGATAACTTTTACAGACGAGTTAGTGAATATAGTTGACTGTACATCATTCTCAGTAGAAGAAGCCATCCCGAATGAAATATGATTGTTCGTCAATTTTCATAGTCAAAACGCTACTTTTCACCATTCTAACCACTGCAGCCCAGCACAGATAGTGTTTTATATTAACTGTTTTGACGGCGTGCCAACAAGCGATTATTTTGTAGATACTGTAGGTGTATCGAGTTTGTTTTCATGCTTTTTGTTTTGTCAAATACGCGATATCAAGTTACTTCGCGTTTCCCCATAAGAGTGACTGAATGACATTTCCACTTAATTTATCTAAAAGTAGCAAGCGGCTTTTAGAATATTTTCAAAATAACAGTACCGACAATACGTGCCAGGTTTTACCCATATGGACCTAGGGTTATAGATAGATGGGACGTGGTGATGCTTATCTGCAGTTTTAGTTTTTAAGCCCTCCAGCTATAATTTCAGAAGAGTGCCAGGGAAAGTTTGGTCGATGGCGAGGATCACGTCAAATTATATTTGACAAAATAATTACTTTCTGAGGCATTTCCTCATTTCATTTCTTTCTTGGAGTTACAAAAAATATTAAATTTTCTACACGAAG

Protein

Uniprot

Gene family

Uniprot term	Description
Q8QGH2	Small ubiquitin-related modifier 1 OS=Gallus gallus OX=9031 GN=SUMO1 PE=3 SV=1
Q5E9D1	Small ubiquitin-related modifier 1 OS=Bos taurus OX=9913 GN=SUMO1 PE=3 SV=1
P63165	Small ubiquitin-related modifier 1 OS=Homo sapiens OX=9606 GN=SUMO1 PE=1 SV=1

Gene family	Subfamily
Ubiquitin Family	ULD\|UBL\|NEDD8
Ubiquitin Family	ULD\|UBL\|SUMO
Ubiquitin Family	ULD\|UFD/UBQ\|UBQ_Other
Ubiquitin Family	ULD\|UFD/UBQ\|UBQ_PIM

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11976	Rad60-SLD	Ubiquitin-2 like Rad60 SUMO-like	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029071	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR000626	Domain	Ubiquitin-like domain	Interproscan
IPR022617	Domain	Rad60/SUMO-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10562	SMALL UBIQUITIN-RELATED MODIFIER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0016605	Cellular Component	PML body	Interproscan
GO:0016925	Biological Process	protein sumoylation	Interproscan
GO:0031386	Molecular Function	protein tag activity	Interproscan
GO:0044389	Molecular Function	ubiquitin-like protein ligase binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12160	SUMO, SMT3; small ubiquitin-related modifier	-	Cytoskeleton proteins	ko04812	deepkoala