Gene detail

Detailed information of scaffold256.g5.t1 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold256:36457...47284
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold256.g5.t1

atgtggcaatgtgggttgccacagactgctttgcatctttcgcaatgacctatcctaggctatcctttctgatctgaattcctttatacctcctagggtacaatcattgccagagaaagagcatagtaaaaaaacaatggatgtcgatgaagttgtgaaacagtacaaatttcaaaggaagtttgctgatagacgtaaagatttatacagtgcaaggacgttcatttatgaaggagaagaaaaatgtgatcaaaatagagatgtctttcttgactgtattgaaaccacaggaaagacgagtaataatgggtttgctgctattaaagtgactgctcttggaagacctacgttattgcttcgtctgtcagagattctaaatcagacgcgattttatttcgataaattggcgagcaaaactggattccttgcggagaggtcaattgcaagcagcacgtttcatcatggattgcaagatcttgggattgaaatgtcaaaagaggaagcgaccagaatttttgatatcattgatgaagataaaagtggaactattgatatcattgaatggcataatttcctgacacctcaactacaacttggaaagctgttcaaggcgaaaccaaaaactgttggtgagaaaagcactgcaaaattgagtacgatgactgaaacagaactgcaagaaatgcacaatttacaagaaagacttatgcaaattgctgagctcgccaaggaacgtggagtaactttgatgatcgatgctgaacagacatatttccagcctgccattagcagattaactctagattgccagagaagttacaatcgagaaagacccgttgttttgaacacataccaatgttatcttaaagatgcactagacactgtaatgatcgatcttgaacttgcgaaacgagagaatttctacttcggtgcaaaagttgttcgtggtgcttacatggagcaagagagagcaagggcagcatcagttggatatgaagatccaattcatgcgaattatgaaggaacgaatgattgttataattctgttattgactgtattttgaatgctgttgcggaaagagatgcacatgttatggtcgcatcgcataatcaggattctgtgaaactgactgtcgaaaagatgaaaaaacttggcatatctgcaaatgaaggaaaagtcttctttggtcaattactgggaatgtgtgatggagtaacttatgcactcggatataatttcaaaacataaatagtaaacataacagtatcagcataaaccagtttatttatttaaatctgttcagcaaattctataaaatttattaccctcaaaacctgttacattttcgcaagatagattgcagctcgccacgaatttttcaccgtcgtttggttgtggcaaattatagggtctacagggggtaaaagggttagcttggcgggaaatgggcgagcttggggggaaatgggtgaagcaacgatggcgaataaatgtcacaacaatcttaataaagagatttcctatggatacatccggtgaaactacttcacataccctcattgactttgtaaacgttgatcgcatagtgaggatccactgtttttaaccattatgtacacaacacgttttatctcagccaaaccatgctacccgcccattagttgcccccatgcagacccttatcactttcatgctgcaagagccattcgcatctctcggctaatcaggcatttaaatccctttgtttacactcgttgcattcattctgcttaatttgatcaaatgtactcgaagattttgttacaaaacacgcccttgtcttatgtttatttacatgtaacatgttagtatagctgaggcaatgtatgctacatctccctttatacagcttacgacataattacgcaaaatgaaatgaacccagatcactttgcaaataatttgcgaaagtcatcattgcttcttttgacatttagcaattcattctgttcgtcatttctctgttcgtcatttctttcttcgttatcacttctctccttcttttgctctggctttgaagttgctgttgtcgtcgcatgtgcatggattgatcttggcactagtgacacctgagtttttgctcttccgcggctaaaaataattgaaaatatgtattacaaatttcgatttttgttttcacactgagccttgaggccttttacctattctcaaaaaagagtttggatcgcgagatatttttataaatttttatacgagaggtttgactaaatggcgttagaacttctaccactattgtgcacatttgaaaatcctaccaaatgtatgaaaacatagactatgatgaaaatgtcgttcgatttagactgcctcaaattagctgtcatgtgaaaatgcctgcgaataacaacaatttcgtaaattccccgtgacatttaattcgtaactgttctacagtatgggtatgggtctgggtctgataagccaagggtgactgatagaaacagcagctctttcgtcaaagcattacaagtgcccttcatctacggaaaagaaatctcacatctgccatccagcataaaacagtcagtcgcgaaatatcaactgcaccatcaaaattatcaaataccttccatgctcaattcgttttcgttgctcaggtctttgatctggttgcggagcattctctttgcgcgcaggagctttagatatagcaacattgatgggtcttcctttaactgtttgaccatccagtttcaaaacagcagttgatgcagatgcc

Transcript

scaffold256.g5.t1

ATGTGGCAATGTGGGTTGCCACAGACTGCTTTGCATCTTTCGCAATGACCTATCCTAGGCTATCCTTTCTGATCTGAATTCCTTTATACCTCCTAGGGTACAATCATTGCCAGAGAAAGAGCATAGTAAAAAAACAATGGATGTCGATGAAGTTGTGAAACAGTACAAATTTCAAAGGAAGTTTGCTGATAGACGTAAAGATTTATACAGTGCAAGGACGTTCATTTATGAAGGAGAAGAAAAATGTGATCAAAATAGAGATGTCTTTCTTGACTGTATTGAAACCACAGGAAAGACGAGTAATAATGGGTTTGCTGCTATTAAAGTGACTGCTCTTGGAAGACCTACGTTATTGCTTCGTCTGTCAGAGATTCTAAATCAGACGCGATTTTATTTCGATAAATTGGCGAGCAAAACTGGATTCCTTGCGGAGAGGTCAATTGCAAGCAGCACGTTTCATCATGGATTGCAAGATCTTGGGATTGAAATGTCAAAAGAGGAAGCGACCAGAATTTTTGATATCATTGATGAAGATAAAAGTGGAACTATTGATATCATTGAATGGCATAATTTCCTGACACCTCAACTACAACTTGGAAAGCTGTTCAAGGCGAAACCAAAAACTGTTGGTGAGAAAAGCACTGCAAAATTGAGTACGATGACTGAAACAGAACTGCAAGAAATGCACAATTTACAAGAAAGACTTATGCAAATTGCTGAGCTCGCCAAGGAACGTGGAGTAACTTTGATGATCGATGCTGAACAGACATATTTCCAGCCTGCCATTAGCAGATTAACTCTAGATTGCCAGAGAAGTTACAATCGAGAAAGACCCGTTGTTTTGAACACATACCAATGTTATCTTAAAGATGCACTAGACACTGTAATGATCGATCTTGAACTTGCGAAACGAGAGAATTTCTACTTCGGTGCAAAAGTTGTTCGTGGTGCTTACATGGAGCAAGAGAGAGCAAGGGCAGCATCAGTTGGATATGAAGATCCAATTCATGCGAATTATGAAGGAACGAATGATTGTTATAATTCTGTTATTGACTGTATTTTGAATGCTGTTGCGGAAAGAGATGCACATGTTATGGTCGCATCGCATAATCAGGATTCTGTGAAACTGACTGTCGAAAAGATGAAAAAACTTGGCATATCTGCAAATGAAGGAAAAGTCTTCTTTGGTCAATTACTGGGAATGTGTGATGGAGTAACTTATGCACTCGGATATAATTTCAaaacataaatagtaaacataacagtatcagcataaacCAGTTTATTTATTTAAATCTGTTCAGCAAATTCTATAAAATTTATTACCCTCAAAACCTGTTACATTTTCGCAAGATAGATTGCAGCTCGCCACGAATTTTTCACCGTCGTTTGGTTGTGGCAAATTATAGGGTCTACAGGGGGTAAAAGGGTTAGCTTGGCGGGAAATGGGCGAGCTTGGGGGGAAATGGGTGAAGCAACGATGGCGAATAAATGTCACAACAATCTTAATAAAGAGATTTCCTATGGATACATCCGGTGAAACTACTTCACATACCCTCATTGACTTTGTAAACGTTGATCGCATAGTGAGGATCCACTGTTTTTAACCATTATGTACACAACACGTTTTATCTCAGCCAAACCATGCTACCCGCCCATTAGTTGCCCCCATGCAGACCCTTATCACTTTCATGCTGCAAGAGCCATTCGCATCTCTCGGCTAATCAGGCATTTAAATCCCTTTGTTTACACTCGTTGCATTCATTCTGCTTAATTTGATCAAATGTACTCGAAGATTTTGTTACAAAACACGCCCTTGTCTTATGTTTATTTACATGTAACATGTTAGTATAGCTGAGGCAATGTATGCTACATCTCCCTTTATACAGCTTACGACATAATTACGCAAAATGAAATGAACCCAGATCACTTTGCAAATAATTTGCGAAAGTCATCATTGCTTCTTTTGACATTTAGCAATTCATtctgttcgtcatttctctgttcgtcatttctttcttcgttatcacttctctccttcttttgctctGGCTTTGAAGTTGCTGTTGTCGTCGCATGTGCATGGATTGATCTTGGCACTAGTGACACCTGAGTTTTTGCTCTTCCGCGGCTAAAAATAATTGAAAATATGTATTACAAATTTCGATTTTTGTTTTCACACTGAGCCTTGaggccttttacctattctcaaaaaagagtttggatcgcgagatatttttataaatttttatacgagaggtttgactaaatggcgttagaacttctaccactattgtgcacatttgaaaatcctaccaaatgtatgaaaacatagactatgatgaaaatgtcgttcgatttagactgcctcaaattagctgtcatgtgaaaatgcctgcgaataacaacaattTCGTAAATTCCCCGTGACATTTAATTCGTAACTGTTCTACAGTATGGGTATGGGTCTGGGTCTGATAAGCCAAGGGTGACTGATAGAAACAGCAGCTCTTTCGTCAAAGCATTACAAGTGCCCTTCATCTACGGAAAAGAAATCTCACATCTGCCATCCAGCATAAAACAGTCAGTCGCGAAATATCAACTGCACCATCAAAATTATCAAATACCTTCCATGCTCAATTCGTTTTCGTTGCTCAGGTCTTTGATCTGGTTGCGGAGCATTCTCTTTGCGCGCAGGAGCTTTAGATATAGCAACATTGATGGGTCTTCCTTTAACTGTTTGACCATCCAGTTTCAAAACAGCAGTTGATGCAGATGCC

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01619 all species →	Pro_dh	Proline dehydrogenase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR002872 all species →	Domain	Proline dehydrogenase domain	Interproscan
IPR015659 all species →	Family	Proline oxidase family	Interproscan
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR029041 all species →	Homologous_superfamily	FAD-linked oxidoreductase-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13914 all species →	PROLINE OXIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004657 all species →	Molecular Function	proline dehydrogenase activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0006562 all species →	Biological Process	proline catabolic process	Interproscan
GO:0010133 all species →	Biological Process	proline catabolic process to glutamate	Interproscan
GO:0071949 all species →	Molecular Function	FAD binding	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold256.g5.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.