Gene detail

Detailed information of scaffold26.g39.t1 in Morbakka virulenta

Genomic Location: scaffold26:1871595...1880253
NR annotation: ALJ33557.1, Hlh-4 [Clytia hemisphaerica]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

scaffold26.g39.t1

GATTCAGCAACAAAATAATCCTTTGGTCCAACTACATCCAAAGGAAAAGCTGAAACCACAGACCAACAAGCAGTCTGTATAAATTTGCCAAAATTTCGGAATTTATATCTTACGGAAGCACATCTAGAAAAGTTTATCGATATCTTGAAGAACTTATATCAATTCAGCTGATAGGAATAACAGGACAGGAGTAAAATGGATCCATTCGATACTTTAGATTGCTTTTTTCCACCTGAATTAATGGGATCAGAAGAGACTCAGGATGAGACCGTCAGCTCAGGAAAAAATAATGGAAGAAAGAAGCCAAGGCGAAGAAAGAGGATGCTTACAGGGGTCAGTAAACAACGGAGGGCAGCAAACGAAAGAGAAAGGAAAAGGTTACAGATCATAAATGGTGCTTTTCAAAACCTAAAATGTTCTCTGCCTTTACTTCCTGGCGAAGAAAATATATCCAAGATTGAAATAGTGCGATTAGCTGCAAAAACCATACGTCACCTAGCACAAATTTTACAGGATGATGACCTGAAGCGTTCTGGTATTGGGGTCAAGAATGAAGAGGCAGACGAATATAGCTCGAGCTGTAGTTCACTTTACAGTGAATCTATGTCAAGTGAGGAGGACCTACCTACAATGTATACAATGGACATGTCGCTTTTACTTTTTCCTAACGAGGGTGTGGCAGATGTGAAATTAGACTCTATTGATTCAGGCCTTGAAGTACCTTCACCATCAATATCGGAAGCATCGTCAGCAAGTAGATCAAACAGTCTTGATTTTCCGTTCATGGAAGAGGACCCTGTACAAGAAGACGACGTTTTTAGAAGTGGGCCAAGCATGATAGCATGGTAACCAAATGACAAGGTAGGATGATCCAATTAATATCACCAGAGAAAATAAATTCAGAAAAGGAATTTTGAAATTAAGAATTTATATCTTTTAAATTTTTGAGAGTACAAAAATCTACCTTAGGAATGTCACCTTTTGCTGGGAAAAGACTGAAGTAGCTGTTTTGTATTCTCCCTAAAATTGCTATTAGCTCACTATTTAGTAGATACTTTAGAAAATTATAGAGTTAAATATATGTGATCGTAACTAATGGAAAAAATGATGAACTTTGAAATGTTGAATAAACCCCATGCTAGGATGAATCAAAAAGGTCCTTTTCAAGATACAGCCTTCGCCTTTAATGGACACTCCAAGCATTGGAATTATCGGGAGTTGCAGAAAATCTTTTTATTTGGGTACATCAGAAAAAATGCATCACGGGAGACCTCATACCTGAATTTAGTTTCTTAAAAACGATGGAGTGAATCCTAATTCTACATATAATTTAAATATGTTCAAATTACCATTGAAGCTCTGTTTATAATGTGCAACTGAGAAGATTCATAACAAATGTGCATATGGACAGCATATTGACTGGTTTCTTTGCCGCATCAAAGGGTGAATGCCTCTCTATAGCTATTGTTTACCTAACTCTCAAGTCAAGCTGTTTGAAGAAACGCTTATTATGATGGATATTTTATACATTACTGACCTCCTAGCTAGAAAGTCGCTAGCGTCGGAAATGAAGACTGCAGGGAAAAACAATATATTTTCATTTGATTTGAATTGCAAACCAGGGAATCCAGTGGAAACAAAAAAAGTTAATTCGGACTTTCCCTTAAGCAAATCTTGCATTTAGGTTTTTTATTTTAAATTGAGTTCATATGCATCTCTTATTAACCTTCAACTAGCTTTCTTTGAAAAATTTTCATGCGTCGTTTTTTAAGACTTTGTCGTGTAGCACATAATGAGCAAGTCTTGAAAACACTGCAGAGCTATTCATGGATAACTTTTGAAAGAATTGAGAATATTAACACCAAAGTAGAAATGAGTGATATCTATCTCGTTAGTTTAAGCAGTGCAGTGTAGGGAATTAATCACTTTGGGTAATCTGTTTTGTGTTTAATTAGATTATCATTATCATAAAATTGCATAAATAAGGAAGGTTGTTATGGAAACTACCATATTCTCTTGTGCATAATTATACTCGAAAAAGTTTAGGCTAATGAAAGGTGACTATCATTCTATGCAAAATATCAGCAGGTTAATTGAATCCCCTTTATAGTATTATCTAGGATATATAAAGAATTAACAATCAG

Protein

Uniprot

Uniprot term	Description
O88940	Musculin OS=Mus musculus OX=10090 GN=Msc PE=1 SV=1
Q5E9S3	Transcription factor 21 OS=Bos taurus OX=9913 GN=TCF21 PE=2 SV=1
O43680	Transcription factor 21 OS=Homo sapiens OX=9606 GN=TCF21 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00010	HLH	Helix-loop-helix DNA-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036638	Homologous_superfamily	Helix-loop-helix DNA-binding domain superfamily	Interproscan
IPR011598	Domain	Myc-type, basic helix-loop-helix (bHLH) domain	Interproscan
IPR050283	Family	E-box Binding Transcriptional Regulators	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23349	BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, TWIST	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0046983	Molecular Function	protein dimerization activity	Interproscan
GO:0000977	Molecular Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0032502	Biological Process	developmental process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K09104	TX; delilah	-	Transcription factors	ko03000	deepkoala