Gene detail

Detailed information of scaffold263.g9.t1 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold263:150346...152338
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold263.g9.t1

ggagcaggtgaaccttcaggcgttccttgagactgaatttggccagctctaccgggcgggcgacattgaccacatgacagacacaacaaaattggcagctgagtgatgaaagacatggcacaaacagcagacgatatcctgaagaacctcgacctgacggcagcagagctgagcggtggcagccgcgcggtgcgctcgcccattgatggcagcacgctggcggaggtccacgacacccccgcaggcgagatgcccgcgattctggaacgcgcgcagtccgcgtttaaggcatggcgcgtggtgccggccccgcggcgcggcgaactgatccgcctgctgggtgaggaactgcgcgccgccaaggatgaccttggcgcgctggtcagctgggaagcgggcaagatcacctctgagggcctcggcgaagtgcaggagatgattgacatctgtgattttgccgtgggtctgtcgcgccagctttatggtctgacgattgcctcggaacggcccggccacagcatgcgcgaaacatggcatccttcggggccggtgggcgtgatctcggcgttcaacttcccggttgcggtctggtcgtggaatgcggcgctggcgattgtctgcggcgatccggtgatctggaaaccgtcggagaaaacaccgctgacggcgctggcctgcaccaagatctttgaacgcgcggtgaaacgctttggcgaggatgcgcctgagggcctgctgcagaccctgattggcgatgcggaactgggcaaggtgctggtcgccagcccatccgtgccggtgatttccgccacagggtcgacccgcatgggccgcgcggtggcacctgtggtggcagagcggttcggcaaatgcattctcgaacttggtggcaataacgcgatgatcgtggccccctcggcggatctggaaatggcggtgcgggcgatcgtgttctctgccgtgggcaccgccggtcagcgctgcacctcgctgcgccgcctgatcgtgcataactccattcgcgaggatctggtgaaacgcctgaaggccgcctatgccggtctgcctattggcgacccgcaagccgagggcacgctggttggcccgctggtggacgaggccgcaggggatgcgatgacctcggcgctgaaggcggccgagagcgagggcggcacggtgcatggtggcgcgcgcgtcaccgagggcgtgcccgcaggcggtgtctatatggcgccagcaattgtcgagatgcccggtcagagcgcgtcggtcaaagaagagacctttgcgccgatcctatacgtcatgggctatgacgattttgaggacgcggtggagatgcagaacgacgtgccacaggggctgagctcctgcgtgttcacgctcaatatgcgcgaggcggagagtttcctcactgctgcgggttctgattgtggcattgccaacgtcaacatcgggccttcgggtgcggaaatcggcggtgcctttggcggcgagaaggaaactggcggtgggcgcgagagcggctctgacgcgtggaaatcctacatgcgccgccagaccaacaccgtgaactattccgcagagctgccgctggcgcagggtgtgaagttcgacatctgaggtcgggaaggttctgatttggctgtcgcgcaagcggcagccacgcgcccgccagagtgcggcgggacacgcggtgtgatggtaacgagtgtctgagggtttccctccctgccgactgcggcggggaggtttctgtcagtctgcagcgatggcaaagctctcgaccggctgcgagacattgtgcagcttcacatgtcccagcggcttggcctcggcggtttccgtcaggatgtcgcgcgacaccacgatgcggtggccaatggtcttgccgtaatcgcccagacgcgcggcaatattggcggcctgaccgatcacggtgaagtccagccgctcctgcgagccgatatttccataaagcaccgacccagag

Transcript

scaffold263.g9.t1

GGAGCAGGTGAACCTTCAGGCGTTCCTTGAGACTGAATTTGGCCAGCTCTACCGGGCGGGCGACATTGACCACATGACAGACACAACAAAATTGGCAGCTGAGTGATGAAAGACATGGCACAAACAGCAGACGATATCCTGAAGAACCTCGACCTGACGGCAGCAGAGCTGAGCGGTGGCAGCCGCGCGGTGCGCTCGCCCATTGATGGCAGCACGCTGGCGGAGGTCCACGACACCCCCGCAGGCGAGATGCCCGCGATTCTGGAACGCGCGCAGTCCGCGTTTAAGGCATGGCGCGTGGTGCCGGCCCCGCGGCGCGGCGAACTGATCCGCCTGCTGGGTGAGGAACTGCGCGCCGCCAAGGATGACCTTGGCGCGCTGGTCAGCTGGGAAGCGGGCAAGATCACCTCTGAGGGCCTCGGCGAAGTGCAGGAGATGATTGACATCTGTGATTTTGCCGTGGGTCTGTCGCGCCAGCTTTATGGTCTGACGATTGCCTCGGAACGGCCCGGCCACAGCATGCGCGAAACATGGCATCCTTCGGGGCCGGTGGGCGTGATCTCGGCGTTCAACTTCCCGGTTGCGGTCTGGTCGTGGAATGCGGCGCTGGCGATTGTCTGCGGCGATCCGGTGATCTGGAAACCGTCGGAGAAAACACCGCTGACGGCGCTGGCCTGCACCAAGATCTTTGAACGCGCGGTGAAACGCTTTGGCGAGGATGCGCCTGAGGGCCTGCTGCAGACCCTGATTGGCGATGCGGAACTGGGCAAGGTGCTGGTCGCCAGCCCATCCGTGCCGGTGATTTCCGCCACAGGGTCGACCCGCATGGGCCGCGCGGTGGCACCTGTGGTGGCAGAGCGGTTCGGCAAATGCATTCTCGAACTTGGTGGCAATAACGCGATGATCGTGGCCCCCTCGGCGGATCTGGAAATGGCGGTGCGGGCGATCGTGTTCTCTGCCGTGGGCACCGCCGGTCAGCGCTGCACCTCGCTGCGCCGCCTGATCGTGCATAACTCCATTCGCGAGGATCTGGTGAAACGCCTGAAGGCCGCCTATGCCGGTCTGCCTATTGGCGACCCGCAAGCCGAGGGCACGCTGGTTGGCCCGCTGGTGGACGAGGCCGCAGGGGATGCGATGACCTCGGCGCTGAAGGCGGCCGAGAGCGAGGGCGGCACGGTGCATGGTGGCGCGCGCGTCACCGAGGGCGTGCCCGCAGGCGGTGTCTATATGGCGCCAGCAATTGTCGAGATGCCCGGTCAGAGCGCGTCGGTCAAAGAAGAGACCTTTGCGCCGATCCTATACGTCATGGGCTATGACGATTTTGAGGACGCGGTGGAGATGCAGAACGACGTGCCACAGGGGCTGAGCTCCTGCGTGTTCACGCTCAATATGCGCGAGGCGGAGAGTTTCCTCACTGCTGCGGGTTCTGATTGTGGCATTGCCAACGTCAACATCGGGCCTTCGGGTGCGGAAATCGGCGGTGCCTTTGGCGGCGAGAAGGAAACTGGCGGTGGGCGCGAGAGCGGCTCTGACGCGTGGAAATCCTACATGCGCCGCCAGACCAACACCGTGAACTATTCCGCAGAGCTGCCGCTGGCGCAGGGTGTGAAGTTCGACATCTGAGGTCGGGAAGGTTCTGATTTGGCTGTCGCGCAAGCGGCAGCCACGCGCCCGCCAGAGTGCGGCGGGACACGCGGTGTGATGGTAACGAGTGTCTGAGGGTTTCCCTCCCTGCCGACTGCGGCGGGGAGGTTTCTGTCAGTCTGCAGCGATGGCAAAGCTCTCGACCGGCTGCGAGACATTGTGCAGCTTCACATGTCCCAGCGGCTTGGCCTCGGCGGTTTCCGTCAGGATGTCGCGCGACACCACGATGCGGTGGCCAATGGTCTTGCCGTAATCGCCCAGACGCGCGGCAATATTGGCGGCCTGACCGATCACGGTGAAGTCCAGCCGCTCCTGCGAGCCGATATTTCCATAAAGCACCGACCCAGAG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00171 all species →	Aldedh	Aldehyde dehydrogenase family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016163 all species →	Homologous_superfamily	Aldehyde dehydrogenase, C-terminal	Interproscan
IPR016161 all species →	Homologous_superfamily	Aldehyde/histidinol dehydrogenase	Interproscan
IPR044638 all species →	Family	Aldehyde dehydrogenase family 7 member A1-like	Interproscan
IPR029510 all species →	Conserved_site	Aldehyde dehydrogenase, glutamic acid active site	Interproscan
IPR016162 all species →	Homologous_superfamily	Aldehyde dehydrogenase, N-terminal	Interproscan
IPR015590 all species →	Domain	Aldehyde dehydrogenase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43521 all species →	ALPHA-AMINOADIPIC SEMIALDEHYDE DEHYDROGENASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016620 all species →	Molecular Function	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0004029 all species →	Molecular Function	aldehyde dehydrogenase (NAD+) activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K26061	amaB; L-aminoadipate-semialdehyde dehydrogenase	-	Lysine degradation	ko00310	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.