Gene detail

Detailed information of scaffold264.g11.t1 in Morbakka virulenta

Genomic Location: scaffold264:313592...315985
NR annotation: PZO93396.1, hypothetical protein DI617_08800 [Streptococcus pyogenes]

Gene Structure

More details in Jbrowse

Sequence

CDS

scaffold264.g11.t1

atgaaaaattcagtttccgtcatcctgctccaagaaacacacaccaacaacaacgacaaaatcaagatctatggctacaagctaatcggtgctgttcacgacaacaagcacggtattgctaccctcgtcagaaatgacctcactgcagaacttgttgaaaagagcaaagacagtgaaatgcagtggctaaccatcaggattaacgacgatataacgattaccaacatctacaaaccaccgaattctccatttgtaccgccccctctttatgaccacccagtcatttattcaggggacttcaactgccaccacacctcttggggctatcgaaagaatgaccacgatggtgaagccctctacgagtgggcaagtacaatggacctcaagttactatacgatcctaaacagcccaaatcattcgactcagctgcatggggtacttccaccaacccagacctttcgttctactcatcggatgcaagcagttcatcgccacacccagtccacaaaatcggtggaagctttcccaagtcacaacatcgtccgaccatcataaaccaccctgcgttgatcgagtacacaccatcttctccacttcctcggtggaatttcaacaaggctgactggagtcgtttcaaaaacgaatctgctagcatgtgcgacgatcttccttctatgtataccgccgacatcaacacctgttacactgctttccagaacaaactcttgaacctggccaaagaatgcgttccgaggggctttcgtaaatcgtacattccaaagtgggacgatacatgtagtaagcttgcgaaagaccacgaacaagctcaaacaacagctgaaagacacgaaacagcaaacaaacttatcgctcacttgtctacaagacgaaaggaagcgtggctgtcaacagttgaaggtatcgatatgagtcgatctagtaggaaagcctgggcaaccatcaacaagctcacgggcaggaagaatgtatcacccaacccacattctgtcagtgcaaacgcagttgcctcctgcctcttaaagaacggcaaatttgataaaccaaatcgcgaattcacaagagatgttaaccgacaactgaagatggcttggaatgctccatcagctgatcagaacttgtgtaacgatttctctatcgacgaaattaccgctgctattaagactctaaaagctggcaaggccccaggccctgacaatctgcaccctgaattctttctacacttacatgagaactgtttacaatggcttcggtcgctcttcactcaatgtatccactcgaaaaagctcccaaaagtgtggaaacttgcaaaagtcattgctgtcctcaatcccaacaagcctcctgacgatgcaaaaagctacagaccaatcagcctcctgtgcatagcctacaaactctatgaacgccttatttataaccgaatcaaacctgctatggaatctgttcttcccaaagagcaagctggtttcagacaaggccgctgcactcttgatcaagtcgcacttcttacagaagacatcgagacatccttcgacaaacgcatgaaagctggtatcgtactagtagacctatccgctgcctacgatacagtttggcaccgtggacttaccctgaaactactaagaactattcctagtaaagagatggtatacgtgatcatgagtatgatatcccaacggcgcttccacgtaaacatcggaaaggggaaatctcgatgcagaacactcaccaatggtgtcccacagggctccctcattgcgcctgcactatttaatctgtacatttacgacatccctggcacgatcagtaataagtacatctatgcagatgataaagccctcatgcacagtgacaaacaatttcgggtgatcgagagagtactatcgggtgaccttgacaaattgaggacttattttcataactggcgcctcaaattaaacacaactaagactgttgcaagcactttccatttaaacaactgccaagctgactacgaacttaacgtctcgacatctggtgaaaggatcgcctttgacaagaccccaaaatatcttgccgtgacccttggcaggactttgtcatacaaaaaacacttacaaactgtcgcagagaaaacaagaaaacggtgtagcctgttaaaaagacttgctagtaataactggggcgctgatttcaccacgcttcacacctcaccactagcactatgctattcagtggtagagtactgctcccagtgtggagtcagagcccccactgtaagaagctag

Transcript

scaffold264.g11.t1

gaaggcatatcgggacctaaatgtgaagttatacaaaacatcgccatgaaaaattcagtttccgtcatcctgctccaagaaacacacaccaacaacaacgacaaaatcaagatctatggctacaagctaatcggtgctgttcacgacaacaagcacggtattgctaccctcgtcagaaatgacctcactgcagaacttgttgaaaagagcaaagacagtgaaatgcagtggctaaccatcaggattaacgacgatataacgattaccaacatctacaaaccaccgaattctccatttgtaccgccccctctttatgaccacccagtcatttattcaggggacttcaactgccaccacacctcttggggctatcgaaagaatgaccacgatggtgaagccctctacgagtgggcaagtacaatggacctcaagttactatacgatcctaaacagcccaaatcattcgactcagctgcatggggtacttccaccaacccagacctttcgttctactcatcggatgcaagcagttcatcgccacacccagtccacaaaatcggtggaagctttcccaagtcacaacatcgtccgaccatcataaaccaccctgcgttgatcgagtacacaccatcttctccacttcctcggtggaatttcaacaaggctgactggagtcgtttcaaaaacgaatctgctagcatgtgcgacgatcttccttctatgtataccgccgacatcaacacctgttacactgctttccagaacaaactcttgaacctggccaaagaatgcgttccgaggggctttcgtaaatcgtacattccaaagtgggacgatacatgtagtaagcttgcgaaagaccacgaacaagctcaaacaacagctgaaagacacgaaacagcaaacaaacttatcgctcacttgtctacaagacgaaaggaagcgtggctgtcaacagttgaaggtatcgatatgagtcgatctagtaggaaagcctgggcaaccatcaacaagctcacgggcaggaagaatgtatcacccaacccacattctgtcagtgcaaacgcagttgcctcctgcctcttaaagaacggcaaatttgataaaccaaatcgcgaattcacaagagatgttaaccgacaactgaagatggcttggaatgctccatcagctgatcagaacttgtgtaacgatttctctatcgacgaaattaccgctgctattaagactctaaaagctggcaaggccccaggccctgacaatctgcaccctgaattctttctacacttacatgagaactgtttacaatggcttcggtcgctcttcactcaatgtatccactcgaaaaagctcccaaaagtgtggaaacttgcaaaagtcattgctgtcctcaatcccaacaagcctcctgacgatgcaaaaagctacagaccaatcagcctcctgtgcatagcctacaaactctatgaacgccttatttataaccgaatcaaacctgctatggaatctgttcttcccaaagagcaagctggtttcagacaaggccgctgcactcttgatcaagtcgcacttcttacagaagacatcgagacatccttcgacaaacgcatgaaagctggtatcgtactagtagacctatccgctgcctacgatacagtttggcaccgtggacttaccctgaaactactaagaactattcctagtaaagagatggtatacgtgatcatgagtatgatatcccaacggcgcttccacgtaaacatcggaaaggggaaatctcgatgcagaacactcaccaatggtgtcccacagggctccctcattgcgcctgcactatttaatctgtacatttacgacatccctggcacgatcagtaataagtacatctatgcagatgataaagccctcatgcacagtgacaaacaatttcgggtgatcgagagagtactatcgggtgaccttgacaaattgaggacttattttcataactggcgcctcaaattaaacacaactaagactgttgcaagcactttccatttaaacaactgccaagctgactacgaacttaacgtctcgacatctggtgaaaggatcgcctttgacaagaccccaaaatatcttgccgtgacccttggcaggactttgtcatacaaaaaacacttacaaactgtcgcagagaaaacaagaaaacggtgtagcctgttaaaaagacttgctagtaataactggggcgctgatttcaccacgcttcacacctcaccactagcactatgctattcagtggtagagtactgctcccagtgtggagtcagagcccccactgtaagaagctagacgtatgtctgaacgaatgcaggagaactgttagtggttcaataaaatccactccaaccg

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF14529	Exo_endo_phos_2	Endonuclease-reverse transcriptase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR036691	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR005135	Domain	Endonuclease/exonuclease/phosphatase	Interproscan
IPR052560	Family	RNA-directed DNA polymerase, mobile element	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR36688	ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003824	Molecular Function	catalytic activity	Interproscan