Gene detail

Detailed information of scaffold274.g23.t2 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold274:281568...296654
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold274.g23.t2

agtgatggatatcttgagagttttgacaagccctgatcttgaagtcagaaagaagagcttggagcttgtcgttgacctgatgaccaccagaaactgcgaagaggttgtgatgttgctgaaaaaagaagtaaataaaacacacacagaaggtgaccaagacgaatcaggaaattacagacaggaactagtgatggatatcttgagagttttgacaagccctgatcttgaagtcagaaagaagagcttggagcttgtcgttgacctgatgaccaccagaaactgcgaagaggttgtgatgttgctgaaaaaagaagtaaataaaacacacacagaaggtgaccaagacgaatcaggaaattacagacaggttctcgttcgtacactacattcatgcagcgtaaagttcccagaagttgcaccatctgttgtaccaatgctgacagaatttcttggtgacactaacgaacaagcagccctggatgttttactgttcattagagaagcaatacaaaagtttgatgttttgaaaccggtaatcattgaaaagctcttggagagtttccataccataaaatctgtcaagattcatcgccatgcattatggatcttgggtgaatattgtgcaaactcacgtgacatattatcagtcatgaaggaaattaaagatggcctcggagatattcctatcgttgatgacgagcttcgaaaagcagctggagaagagaaagaggaccaagaggaagctaaagtaagtggacaaaaactggtgaccgctgatgggacatatgctacgcagagcgccttcacaagtaaaaccagcggaggagcatcgtctgaagaaaagaggccaccacttagaagctacctgataaatggagaatttttcgttggatctgcaattggaagcaccttgacaaaacttgccctcagatttattgaactggaaagtgatgccagaaaacaaaacgcattctgtgcagaagcaatgctcattattgcaagtattattcatcttggaaagtctggcattcctaagaaggcaataagcgaagatgacttagacagactggcaacttgtgttaaatcattagcagaaagaaatgcagttctaaaaggaatattcagtgagcgatgcagaagtgcattatctgtcatgttggaggaaaatgcacaaatacttgatacaggaaaggcttcatcagagaaaaaagttattacaaatcagccagatgagtcgatttcattcctgcaattatttgcaaaatcagagcaaggcgtggctgaggatcaactacagctgagtttgctacaggccattggcagtccaatatcagcaaaagaagaaaatccaaagaattcaaaactcaataaggttgcacaattgaccggattttcagacccaatatatgcggaagcatacgtcaacgtgaatcaatatgacattgttttggatgtgttgattgttaatcaaactgcagatactcttcaaaatgtcactcttgaattggcaacacttggggatctgaagctagttgaaaaaccatcaccgattatgttagctccacacgacttctcaaatattaaggcgagtgtgaaagtagcatcaactgaaaatgggatcatatttggaaatattgtgtacgatgtttctggtggttctggagatagaaattgtgttgtattaaatgacatacatattgatgtgatggattatatcgttcccgccacgtgcacagatactgaattcagagccatgtgggctgagtttgagtgggaaaacaaggtttcagtaaacaccaatatctcagatcttcgggaatatcttgaccatttagttgcaacgacgaatatgaaatgtcttactccagaaaaggccttgtcaggtgattgtggtttcatggcagccaatttctacgcccgaagtattttcggtgaagatgcacttgccaatttgtgtattgaaaagccattagggtctggtgcagaaggtcaagttactggacatattcggattagagcaaaaagtcagggcatggctctcagtcttggtgacaaaatcaacctctctcaaaagaagtcatcataaacaaaggaaaagaatgaatagagagaacaatagaacgaacaatagaaaggacaatgaaaa

Transcript

scaffold274.g23.t2

AGTGATGGATATCTTGAGAGTTTTGACAAGCCCTGATCTTGAAGTCAGAAAGAAGAGCTTGGAGCTTGTCGTTGACCTGATGACCACCAGAAACTGCGAAGAGGTTGTGATGTTGCTGAAAAAAGAAGTAAATAAAACACACACAGAAGGTGACCAAGACGAATCAGGAAATTACAGACAGGAACTAGTGATGGATATCTTGAGAGTTTTGACAAGCCCTGATCTTGAAGTCAGAAAGAAGAGCTTGGAGCTTGTCGTTGACCTGATGACCACCAGAAACTGCGAAGAGGTTGTGATGTTGCTGAAAAAAGAAGTAAATAAAACACACACAGAAGGTGACCAAGACGAATCAGGAAATTACAGACAGGTTCTCGTTCGTACACTACATTCATGCAGCGTAAAGTTCCCAGAAGTTGCACCATCTGTTGTACCAATGCTGACAGAATTTCTTGGTGACACTAACGAACAAGCAGCCCTGGATGTTTTACTGTTCATTAGAGAAGCAATACAAAAGTTTGATGTTTTGAAACCGGTAATCATTGAAAAGCTCTTGGAGAGTTTCCATACCATAAAATCTGTCAAGATTCATCGCCATGCATTATGGATCTTGGGTGAATATTGTGCAAACTCACGTGACATATTATCAGTCATGAAGGAAATTAAAGATGGCCTCGGAGATATTCCTATCGTTGATGACGAGCTTCGAAAAGCAGCTGGAGAAGAGAAAGAGGACCAAGAGGAAGCTAAAGTAAGTGGACAAAAACTGGTGACCGCTGATGGGACATATGCTACGCAGAGCGCCTTCACAAGTAAAACCAGCGGAGGAGCATCGTCTGAAGAAAAGAGGCCACCACTTAGAAGCTACCTGATAAATGGAGAATTTTTCGTTGGATCTGCAATTGGAAGCACCTTGACAAAACTTGCCCTCAGATTTATTGAACTGGAAAGTGATGCCAGAAAACAAAACGCATTCTGTGCAGAAGCAATGCTCATTATTGCAAGTATTATTCATCTTGGAAAGTCTGGCATTCCTAAGAAGGCAATAAGCGAAGATGACTTAGACAGACTGGCAACTTGTGTTAAATCATTAGCAGAAAGAAATGCAGTTCTAAAAGGAATATTCAGTGAGCGATGCAGAAGTGCATTATCTGTCATGTTGGAGGAAAATGCACAAATACTTGATACAGGAAAGGCTTCATCAGAGAAAAAAGTTATTACAAATCAGCCAGATGAGTCGATTTCATTCCTGCAATTATTTGCAAAATCAGAGCAAGGCGTGGCTGAGGATCAACTACAGCTGAGTTTGCTACAGGCCATTGGCAGTCCAATATCAGCAAAAGAAGAAAATCCAAAGAATTCAAAACTCAATAAGGTTGCACAATTGACCGGATTTTCAGACCCAATATATGCGGAAGCATACGTCAACGTGAATCAATATGACATTGTTTTGGATGTGTTGATTGTTAATCAAACTGCAGATACTCTTCAAAATGTCACTCTTGAATTGGCAACACTTGGGGATCTGAAGCTAGTTGAAAAACCATCACCGATTATGTTAGCTCCACACGACTTCTCAAATATTAAGGCGAGTGTGAAAGTAGCATCAACTGAAAATGGGATCATATTTGGAAATATTGTGTACGATGTTTCTGGTGGTTCTGGAGATAGAAATTGTGTTGTATTAAATGACATACATATTGATGTGATGGATTATATCGTTCCCGCCACGTGCACAGATACTGAATTCAGAGCCATGTGGGCTGAGTTTGAGTGGGAAAACAAGGTTTCAGTAAACACCAATATCTCAGATCTTCGGGAATATCTTGACCATTTAGTTGCAACGACGAATATGAAATGTCTTACTCCAGAAAAGGCCTTGTCAGGTGATTGTGGTTTCATGGCAGCCAATTTCTACGCCCGAAGTATTTTCGGTGAAGATGCACTTGCCAATTTGTGTATTGAAAAGCCATTAGGGTCTGGTGCAGAAGGTCAAGTTACTGGACATATTCGGATTAGAGCAAAAAGTCAGGGCATGGCTCTCAGTCTTGGTGACAAAATCAACCTCTCTCAAAAGAAGTCATCATAAACAAAGGAAAAGAATGAATAGAGAGAACAATAGAACGAACAATAGAAAGGACAATGAAAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14806 all species →	Coatomer_b_Cpla	Coatomer beta subunit appendage platform	Domain	Interproscan
PF01602 all species →	Adaptin_N	Adaptin N terminal region	Repeat	Interproscan
PF07718 all species →	Coatamer_beta_C	Coatomer beta C-terminal region	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016460 all species →	Family	Coatomer beta subunit (COPB1)	Interproscan
IPR029446 all species →	Domain	Coatomer beta subunit, appendage platform domain	Interproscan
IPR002553 all species →	Domain	Clathrin/coatomer adaptor, adaptin-like, N-terminal	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR011710 all species →	Domain	Coatomer beta subunit, C-terminal	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10635 all species →	COATOMER SUBUNIT BETA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0006888 all species →	Biological Process	endoplasmic reticulum to Golgi vesicle-mediated transport	Interproscan
GO:0006891 all species →	Biological Process	intra-Golgi vesicle-mediated transport	Interproscan
GO:0030126 all species →	Cellular Component	COPI vesicle coat	Interproscan
GO:0016192 all species →	Biological Process	vesicle-mediated transport	Interproscan
GO:0030117 all species →	Cellular Component	membrane coat	Interproscan
GO:0005198 all species →	Molecular Function	structural molecule activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold274.g23.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.