Gene detail

Detailed information of scaffold278.g2.t3 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold278:65426...143440
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold278.g2.t3

attcttctggagccatctgtgtcaaaatgagccgtttttatcaaaaaaggtccatttagcatattttctcaatgggggcgctcattagataggggttgttcaccggagggaatttggtagttagctttttggctttttataaggctttgcctatttttagctgccagtcagtaaacttgtgagttgaaagatacttcttggtgatagctatccacggatgattttaagtcctccgccaacagttaaaagacccgatcgatggtcgcaagtttacttggatttcatatcaaggtgtcttgtgaaagatttcgagaaacgaccattcgttgatgatttgctagagcattccttcgtatcaggaatctcatttaagtctcatatattgcgacgtaagctgttaacaatactcagtctcaatcgtcctcaaaatgaacgcaaagcaactgagaaaatagacgaagacgccagcaccaaatcgaagttagactaccgaagaaatcaggctatggcgaaaatatccaatctcgctacattggaaaatttggacgaggatgtaatccttggtcatctcctggaacgctacttgaataatcaaatctacacttatattggagatattcttgtcgctgttaatcccttcaagcaacttgatatttacaattcaaaggtggctgatgaatatcgacaagtcaaaggacgtcatcttccacctcatgtttatcaggttgccagatctacgcatctcgctgttctcaacaaacgaaaaaatcagtgcttcgtcattagtggagaaagtggctctgggaagacggtaacatccaactatcttgtagaacaactggctgcccttggcaaagataaaaatcctgctttggtcaataaaatcctcctggtcaacccgttgatggaagcatttggaaatgcggtaacaaatatcaacgaaaactcaagtcgatttggaaaattccttgagttgagttttactcagggtgggagccttgttgaagcgcaacttaccgaatatttactggaaaagtcaagggttgttcatcagtcaagaggagaacgcaattttcatatcctgtattacctgatcgctggccttgattatcatagaaaacttggaaattttgatcttagttctggtgatcagcacaggtatttaaatacagatgacaaaacattggatcaatttgcatgcactccggtgatgcaagaaaagttcatggcaatacagaaatgctttgacattattggatttagtcaagaggaggtgcaaagcttgtactgcatcttagcagctgtaatccatcttggagatgttgagatcgaagctgatgattctatggcacaccatggggaacaaagttgtattcaaagcacagatacaatcaatacggtggcatcattgctgtgcgtgaaaccagatgacctttcaagttcgatcacatcaaccagttccgtaacaagaggagaaacaatcgttcgatataacacagtcgagcaaagccttgattgccgagatgcaactgcaaaggctttgtacagtcgacttttcagttggatagtcaaaaagataaacattctcttgaagtcatcaaatggttactcaagcccaagaaacaattaccagaagattggaattctcgacatatttggcttcgagaattttcaccagaattctttcgagcaattgtgtatcaacattgcaaacgagcagttgcagttttatttcaatcaacatgtttttgaatgggaatttgaagaatacaaaagtgaagggattctattagatacgattcatttcgagaataacagacctgtactggaaatgtttttgcagagaccaatggggctacttgcattactggatgaagaaagccgattccctagagcgacagtgttctcgcttgttgagaaattctgcgacaatctgggcaagtcatactttcagaaaccaaaagattccacatcaatgttttatattcatcactatgcgggaaaggtggcgtatgatgcatcaggttttcttgaaaagaacagagatacaatatcttctgatgtcatgcaactgttacgacttagtgatgatcgattggttcgaacgatctttcaaggagcatcagattcaccagatgattccaagcgtcgtggaagtatttcatcgggtgattcttttgtcatgaaggatggtatgttggttgaaaacaagcattctacgcctcatttgtccacaaacagacttcatctgacgatgtcagtccattttcggaattctcttcgatcgttgatggcaaaaatgatccactccgatcctcatttcattcgatgtatccgtccaaattctttgaacataccagcgaaatttgatcaagaaaaagtaatgactcagttgcggtacactggtgttttggagacatcaaagattagaagacagggctactctgaaaggattccgtttggcgagtttgtcgatagatataaacgtttgatgtactacacaaaggacgacccgccacgggatgcagccacgtgtcgtaccattctgaaaaagattggcattgatacaaactggaggattggaaagacaaaggttttcctgaaatacttccaagtaacggaacttgttcaattactagaagatcaaagacgaaaagccgtcatcatgcaaagatgcatcaaagcgtggctttacaagataagattcaggaacgagaaagcatcgatgatagaaagtgcaatagtagtccaaaaacacgtaagaggatggcttgctcgtcaacgtgtggctaaaatgaaaggagaggaaacacgaaaaactgaagtgattggggaaaggcgtgaaagaagtgcagttagaatacaagcccttttttcggatcctatccatctgcctagaagctataaaanaggatggcttgctcgtcaacgtgtggctaaaatgaaaggagaggaaacacgaaaaactgaagtgattggggaaaggcgtgaaagaagtgcagttagaatacaagcccgaaatgatgactattctaatgataaaagacaaggacatgatgaaaatataaacagtaaaggcccagatgcccgaggtcatctcgcacgtaagcgtcacaagaaactgttggaagaacgtgagaaagaagccagagctaaagaatatcgcgctgcctctttgcaagcagtttatccctggaatcgagatcatatagaatcgggaaaagagtctgaggcagaggaagatgaagatgagatggcattgcatgataccaagacttttttctttctggcacagattcagatgtcaagtgctgatatgactccgttacttcttcgaaccacttacccagttctttattcattgagaaaagagtctactgataaagcaaggaaagaaacctcaaaccagaaaattggctctcgagaaagagttttggccgtgcttgatggaactgatgacaatattcaaaccaaataccgctgggcaagttggctctcgagaaagagttttggccgtgcttgatggaactgatgacaatattcaaaccaaataccgctgggcaagggagaagtttgaaagcaaacctcaccactccagagctcaacc

Transcript

scaffold278.g2.t3

ATTCTTCTGGAGCCATCTGTGTCAAAATGAGCCGTTTTTATCAAAAAAGGTCCATTTAGCATATTTTCTCAATGGGGGCGCTCATTAGATAGGGGTTGTTCACCGGAGGGAATTTGGTAGTTAGCTTTTTGGCTTTTTATAAGGCTTTGCCTATTTTTAGCTGCCAGTCAGTAAACTTGTGAGTTGAAAGATACTTCTTGGTGATAGCTATCCACGGATGATTTTAAGTCCTCCGCCAACAGTTAAAAGACCCGATCGATGGTCGCAAGTTTACTTGGATTTCATATCAAGGTGTCTTGTGAAAGATTTCGAGAAACGACCATTCGTTGATGATTTGCTAGAGCATTCCTTCGTATCAGGAATCTCATTTAAGTCTCATATATTGCGACGTAAGCTGTTAACAATACTCAGTCTCAATCGTCCTCAAAATGAACGCAAAGCAACTGAGAAAATAGACGAAGACGCCAGCACCAAATCGAAGTTAGACTACCGAAGAAATCAGGCTATGGCGAAAATATCCAATCTCGCTACATTGGAAAATTTGGACGAGGATGTAATCCTTGGTCATCTCCTGGAACGCTACTTGAATAATCAAATCTACACTTATATTGGAGATATTCTTGTCGCTGTTAATCCCTTCAAGCAACTTGATATTTACAATTCAAAGGTGGCTGATGAATATCGACAAGTCAAAGGACGTCATCTTCCACCTCATGTTTATCAGGTTGCCAGATCTACGCATCTCGCTGTTCTCAACAAACGAAAAAATCAGTGCTTCGTCATTAGTGGAGAAAGTGGCTCTGGGAAGACGGTAACATCCAACTATCTTGTAGAACAACTGGCTGCCCTTGGCAAAGATAAAAATCCTGCTTTGGTCAATAAAATCCTCCTGGTCAACCCGTTGATGGAAGCATTTGGAAATGCGGTAACAAATATCAACGAAAACTCAAGTCGATTTGGAAAATTCCTTGAGTTGAGTTTTACTCAGGGTGGGAGCCTTGTTGAAGCGCAACTTACCGAATATTTACTGGAAAAGTCAAGGGTTGTTCATCAGTCAAGAGGAGAACGCAATTTTCATATCCTGTATTACCTGATCGCTGGCCTTGATTATCATAGAAAACTTGGAAATTTTGATCTTAGTTCTGGTGATCAGCACAGGTATTTAAATACAGATGACAAAACATTGGATCAATTTGCATGCACTCCGGTGATGCAAGAAAAGTTCATGGCAATACAGAAATGCTTTGACATTATTGGATTTAGTCAAGAGGAGGTGCAAAGCTTGTACTGCATCTTAGCAGCTGTAATCCATCTTGGAGATGTTGAGATCGAAGCTGATGATTCTATGGCACACCATGGGGAACAAAGTTGTATTCAAAGCACAGATACAATCAATACGGTGGCATCATTGCTGTGCGTGAAACCAGATGACCTTTCAAGTTCGATCACATCAACCAGTTCCGTAACAAGAGGAGAAACAATCGTTCGATATAACACAGTCGAGCAAAGCCTTGATTGCCGAGATGCAACTGCAAAGGCTTTGTACAGTCGACTTTTCAGTTGGATAGTCAAAAAGATAAACATTCTCTTGAAGTCATCAAATGGTTACTCAAGCCCAAGAAACAATTACCAGAAGATTGGAATTCTCGACATATTTGGCTTCGAGAATTTTCACCAGAATTCTTTCGAGCAATTGTGTATCAACATTGCAAACGAGCAGTTGCAGTTTTATTTCAATCAACATGTTTTTGAATGGGAATTTGAAGAATACAAAAGTGAAGGGATTCTATTAGATACGATTCATTTCGAGAATAACAGACCTGTACTGGAAATGTTTTTGCAGAGACCAATGGGGCTACTTGCATTACTGGATGAAGAAAGCCGATTCCCTAGAGCGACAGTGTTCTCGCTTGTTGAGAAATTCTGCGACAATCTGGGCAAGTCATACTTTCAGAAACCAAAAGATTCCACATCAATGTTTTATATTCATCACTATGCGGGAAAGGTGGCGTATGATGCATCAGGTTTTCTTGAAAAGAACAGAGATACAATATCTTCTGATGTCATGCAACTGTTACGACTTAGTGATGATCGATTGGTTCGAACGATCTTTCAAGGAGCATCAGATTCACCAGATGATTCCAAGCGTCGTGGAAGTATTTCATCGGGTGATTCTTTTGTCATGAAGGATGGTATGTTGGTTGAAAACAAGCATTCTACGCCTCATTTGTCCACAAACAGACTTCATCTGACGATGTCAGTCCATTTTCGGAATTCTCTTCGATCGTTGATGGCAAAAATGATCCACTCCGATCCTCATTTCATTCGATGTATCCGTCCAAATTCTTTGAACATACCAGCGAAATTTGATCAAGAAAAAGTAATGACTCAGTTGCGGTACACTGGTGTTTTGGAGACATCAAAGATTAGAAGACAGGGCTACTCTGAAAGGATTCCGTTTGGCGAGTTTGTCGATAGATATAAACGTTTGATGTACTACACAAAGGACGACCCGCCACGGGATGCAGCCACGTGTCGTACCATTCTGAAAAAGATTGGCATTGATACAAACTGGAGGATTGGAAAGACAAAGGTTTTCCTGAAATACTTCCAAGTAACGGAACTTGTTCAATTACTAGAAGATCAAAGACGAAAAGCCGTCATCATGCAAAGATGCATCAAAGCGTGGCTTTACAAGATAAGATTCAGGAACGAGAAAGCATCGATGATAGAAAGTGCAATAGTAGTCCAAAAACACGTAAGAGGATGGCTTGCTCGTCAACGTGTGGCTAAAATGAAAGGAGAGGAAACACGAAAAACTGAAGTGATTGGGGAAAGGCGTGAAAGAAGTGCAGTTAGAATACAAGCCCTTTTTTCGGATCCTATCCATCTGCCTAGAAGCTATAAAANAGGATGGCTTGCTCGTCAACGTGTGGCTAAAATGAAAGGAGAGGAAACACGAAAAACTGAAGTGATTGGGGAAAGGCGTGAAAGAAGTGCAGTTAGAATACAAGCCCGAAATGATGACTATTCTAATGATAAAAGACAAGGACATGATGAAAATATAAACAGTAAAGGCCCAGATGCCCGAGGTCATCTCGCACGTAAGCGTCACAAGAAACTGTTGGAAGAACGTGAGAAAGAAGCCAGAGCTAAAGAATATCGCGCTGCCTCTTTGCAAGCAGTTTATCCCTGGAATCGAGATCATATAGAATCGGGAAAAGAGTCTGAGGCAGAGGAAGATGAAGATGAGATGGCATTGCATGATACCAAGACTTTTTTCTTTCTGGCACAGATTCAGATGTCAAGTGCTGATATGACTCCGTTACTTCTTCGAACCACTTACCCAGTTCTTTATTCATTGAGAAAAGAGTCTACTGATAAAGCAAGGAAAGAAACCTCAAACCAGAAAATTGGCTCTCGAGAAAGAGTTTTGGCCGTGCTTGATGGAACTGATGACAATATTCAAACCAAATACCGCTGGGCAAGTTGGCTCTCGAGAAAGAGTTTTGGCCGTGCTTGATGGAACTGATGACAATATTCAAACCAAATACCGCTGGGCAAGGGAGAAGTTTGAAAGCAAACCTCACCACTCCAGAGCTCAACC

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00063 all species →	Myosin_head	Myosin head (motor domain)	Domain	Interproscan
PF00612 all species →	IQ	IQ calmodulin-binding motif	Motif	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036961 all species →	Homologous_superfamily	Kinesin motor domain superfamily	Interproscan
IPR001609 all species →	Domain	Myosin head, motor domain	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR000048 all species →	Binding_site	IQ motif, EF-hand binding site	Interproscan
IPR052409 all species →	Family	Myosin-III family with kinase activity	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46256 all species →	AGAP011099-PA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003774 all species →	Molecular Function	cytoskeletal motor activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016459 all species →	Cellular Component	myosin complex	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000146 all species →	Molecular Function	microfilament motor activity	Interproscan
GO:0004674 all species →	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0018105 all species →	Biological Process	peptidyl-serine phosphorylation	Interproscan
GO:0030832 all species →	Biological Process	regulation of actin filament length	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold278.g2.t3.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.