Gene detail

Detailed information of scaffold281.g4.t3 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold281:102069...128064
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold281.g4.t3

atgatatggaagtaagattattgtaggccataccaaaatcacaacacacgcaagaagtagaaggcaagaaacgaaaagagcagtaaagatatatcgctatgacttcgcgaggctttgttgaacgttagagattacatcgctatgagatattctcatgcagcaaagggtacgggagttatcttgtaatttagataaagattaaaatcgtgttgaagttgacttgtactactaagacgtaagagctgctaaaagagcgtaatactggtaatacaatgcattcaccaagggaaggaattgtccaaaatggcagtggcagcccaggaagccctgcagaaggttcgcaggatccatttgacatcacgacagcgaaattcaaagtcaaccaagtcaaacgtcaagatacccaaaagaaagctttcacaagatgggtcaactcaaagattcaaacgggcgacaagccttttgtcaacgatctctttgtcgacctcagagatgggaacaacttgttgacgttactcgagactctcactggaagaaaaacgacaagagtcagaggtgccctccgtcttcacaagttgaacaacatcaatgttgcactggacctgctcaaagaatataaggaccttcctaccatgtcgcaaccttgcgttccagacattttacctccccctcctctatcatatttcacatcggtggttacaggaatattgtcagtttttatatcactcagcaacgcagctattttagcggccatcatcaaagatccttttaagaatttacgaaaacctttcggttttttccttgccaatattgctgctgccgatcttatagttggcaccataacgatgccgattgcttcagccgtgcatgccctagaggcatcagagcagttggaaccagtgcataccacagttgttcatttaacgttctttgtatcggcaacatccagtgtgcttagcatgatagcattgtgtatggataggcatttgactttaagtgctgtgattgttcatcgaaggaaattatcccgaagacgatgtttcggaattatcttcgcaatttggacaacttcgatcgcattttccataacttacttatggcttggctatgttacgatgttattactgtttctacacatatctctcgtaacgacattcggaatcagcttattaacgtatattacggttgtacgacgagttcgaactcttgcccgatctttgagctctttctcagatcttgcattctcggcagattcgccaaacactagcgacttacactcgaaacgaaggcgaagacgagagcgacacatcaccgaagcatttctcgtaattctcgtaacactcgtctgtatatatctaccatcaattgtttgcgcgtacatacttcagttttgtatcgactgtgattgcgatatacgacatgtcttacgggatgtttgtttcatactaatcgcaagttgcagcgcgataaatccaattgtctgttactttcgactgaatacgatcaagaaggcgatacacgcaacgataaagtgctcgaaaatatcgattttggatctcaagtctttcagatcagtgacaaggcaagaaccagaagcggttgtaggcctagccaaatggaaatacagagcagaggagctcccggaggagctgcgcatttccagtttaattggagtgaataatgaaggattgattcaagatgatgaagtcgctttttgatatgtatgttcgcatcgacgtagaccaccggcggtaggaagcgctgaatttagaaaaagctttcccggggggggggggtacatgacttgaggatggacgggggtctgccgcccggttttcagcaagctaccctcttctaattaccgaaacttgcttttgattcccccttttatgattaatttttgcggaaaactgcccattttaaccattttttgcgaatttcagcgaaaccccacccatgtttatggaaaatctgctgaaaaaggacccttgtttagagaattttgggcccaaaaacccacccatatgggcggcacatacccgtaccctaaatatgttatgtacctcccccgggaaagctttatggtttttccatcgagtttttcctttcgtaatatataattccattcgtg

Transcript

scaffold281.g4.t3

ATGATATGGAAGTAAGATTATTGTAGGCCATACCAAAATCACAACACACGCAAGAAGTAGAAGGCAAGAAACGAAAAGAGCAGTAAAGATATATCGCTATGACTTCGCGAGGCTTTGTTGAACGTTAGAGATTACATCGCTATGAGATATTCTCATGCAGCAAAGGGTACGGGAGTTATCTTGTAATTTAGATAAAGATTAAAATCGTGTTGAAGTTGACTTGTACTACTAAGACGTAAGAGCTGCTAAAAGAGCGTAATACTGGTAATACAATGCATTCACCAAGGGAAGGAATTGTCCAAAATGGCAGTGGCAGCCCAGGAAGCCCTGCAGAAGGTTCGCAGGATCCATTTGACATCACGACAGCGAAATTCAAAGTCAACCAAGTCAAACGTCAAGATACCCAAAAGAAAGCTTTCACAAGATGGGTCAACTCAAAGATTCAAACGGGCGACAAGCCTTTTGTCAACGATCTCTTTGTCGACCTCAGAGATGGGAACAACTTGTTGACGTTACTCGAGACTCTCACTGGAAGAAAAACGACAAGAGTCAGAGGTGCCCTCCGTCTTCACAAGTTGAACAACATCAATGTTGCACTGGACCTGCTCAAAGAATATAAGGACCTTCCTACCATGTCGCAACCTTGCGTTCCAGACATTTTACCTCCCCCTCCTCTATCATATTTCACATCGGTGGTTACAGGAATATTGTCAGTTTTTATATCACTCAGCAACGCAGCTATTTTAGCGGCCATCATCAAAGATCCTTTTAAGAATTTACGAAAACCTTTCGGTTTTTTCCTTGCCAATATTGCTGCTGCCGATCTTATAGTTGGCACCATAACGATGCCGATTGCTTCAGCCGTGCATGCCCTAGAGGCATCAGAGCAGTTGGAACCAGTGCATACCACAGTTGTTCATTTAACGTTCTTTGTATCGGCAACATCCAGTGTGCTTAGCATGATAGCATTGTGTATGGATAGGCATTTGACTTTAAGTGCTGTGATTGTTCATCGAAGGAAATTATCCCGAAGACGATGTTTCGGAATTATCTTCGCAATTTGGACAACTTCGATCGCATTTTCCATAACTTACTTATGGCTTGGCTATGTTACGATGTTATTACTGTTTCTACACATATCTCTCGTAACGACATTCGGAATCAGCTTATTAACGTATATTACGGTTGTACGACGAGTTCGAACTCTTGCCCGATCTTTGAGCTCTTTCTCAGATCTTGCATTCTCGGCAGATTCGCCAAACACTAGCGACTTACACTCGAAACGAAGGCGAAGACGAGAGCGACACATCACCGAAGCATTTCTCGTAATTCTCGTAACACTCGTCTGTATATATCTACCATCAATTGTTTGCGCGTACATACTTCAGTTTTGTATCGACTGTGATTGCGATATACGACATGTCTTACGGGATGTTTGTTTCATACTAATCGCAAGTTGCAGCGCGATAAATCCAATTGTCTGTTACTTTCGACTGAATACGATCAAGAAGGCGATACACGCAACGATAAAGTGCTCGAAAATATCGATTTTGGATCTCAAGTCTTTCAGATCAGTGACAAGGCAAGAACCAGAAGCGGTTGTAGGCCTAGCCAAATGGAAATACAGAGCAGAGGAGCTCCCGGAGGAGCTGCGCATTTCCAGTTTAATTGGAGTGAATAATGAAGGATTGATTCAAGATGATGAAGTCGCTTTTTGATATGTATGTTCGCATCGACGTAGACCACCGGCGGTAGGAAGCGCTGAATTTAGAAAAAGCTTTCCCGGGGggggggggtacatgacttgaggatggacgggggtctgccgcccggttttcagcaagctaccctcttctaattaccgaaacttgcttttgattcccccttttatgattaatttttgcggaaaactgcccattttaaccattttttgcgaatttcagcgaaaccccacccatgtttatggaaaatctgctgaaaaaggacccttgtttagagaattttgggcccaaaaacccacccatatgggcggcacatacccgtaccctaaatatgttatgtacctcccccGGGAAAGCTTTATGGTTTTTCCATCGAGTTTTTCCTTTCGTAATATATAATTCCATTCGTG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00307 all species →	CH	Calponin homology (CH) domain	Domain	Interproscan
PF00001 all species →	7tm_1	7 transmembrane receptor (rhodopsin family)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001589 all species →	Conserved_site	Actinin-type actin-binding domain, conserved site	Interproscan
IPR036872 all species →	Homologous_superfamily	CH domain superfamily	Interproscan
IPR000276 all species →	Family	G protein-coupled receptor, rhodopsin-like	Interproscan
IPR001715 all species →	Domain	Calponin homology domain	Interproscan
IPR017452 all species →	Domain	GPCR, rhodopsin-like, 7TM	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24246 all species →	OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004930 all species →	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007186 all species →	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold281.g4.t3.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.