Gene detail

Detailed information of scaffold2847.g2.t1 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold2847:22166...29924
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold2847.g2.t1

agaggtttacattatgtgttgaattattgcatgccctagaggataatctaggagccacagaatacaaccggtttttatatccgtgatgttgttcctagatcttgctgttcaacacgaaagagcccctcgaaacgcaaaacagcgaactgacgacagtggtggtcgatcaccattagctggactggcatctcttcgccaagaagacaaccaagggcccaccgatctgaattcaaggtctgccagtccgagtttgcatatgtaccatttccagttcccatcaaggaagctgaacgagccttatgttgcagactgccgacaaagcagtgtcccattgaccccaccactgacgcctaagaaccctccacatgtgccaaagtctcccgatgcgttatatgagctgtcagtccgtgttcttcattcaaccataacttgggcacgaaatatcccaacgtttgtggaactgcccttcaaggaccaggcattgcttctagaagagagctgggtggatttgtttcttctgagcctcgcccaatgggatgtggagattgatttgcacgtgatgttgaaagctgcaggcattgaaaatgacaatagatcgacaagtgatataatggcagctattgcagacttgaaccatttacaaaatatcatcaacaaatttaagagttttagattagattcaacggagtatgcttgcttgaaggcaatttctctttttaagccagaactgaggaatgttcgatccataagtcacgtagaaaatcttcaagatcatgcccaagtcatgttagctgaatacacgcggtcgagaagccctgatgttccagtcagatatggcaagatgttattgtcattagcagctttacgaactattagtcctagacttattgagtttcatttctttcgtggatcgttagaaaatgttccagttgaaaaactatttgtagatcatggatatagtggaaatctttgcacgcaaggacaagcacgagtacagcacagtgatattaagcaagagtaaattttttaaatccttctagcccggtctgaccaccattgaatactcaaatttaaaataaattgttttctttggcaagagatggcacaaatttgcctaacggaatgaatttgatgaccaaggcagctatccttcttcttttgaaatattctcatgtcttccgttaacgattcttttcacatgcacgttgagtgaggtagctacataggttgatatcatcttttgtggtctgctttgttttacttcatggattgacaagtcgtctgtagatatccttttatttgctatcgtgaattctttaccttggtgttgcaatcaagaatcaacgggtacaattgttaaaggatctgtccatgttacagagagttacacagtagaatattcttttgttgcccaacagaaaatttcagaattgctggatgtcttatatttgcatctggttgtctgtatgccactttgaatcatgggatgacaataattaacttaattataaaagattataaccagaatcaatcagattgtatttgtaactttataacattagacaaggaccttttcaaagaggcctgggacggcgtgctacttttctggaagatgcggataatctgcgaagggcaatccccttctcactgcagacgttgaaatgcagttgcagtaaacaaattcggccaaggtttgtttacacccatttcaagtcatgtgatcaatctctcgaaaaaacatcttttgatttctctaacatatttcgtgccatgcaaagttatgccatgagtacaaaaattagcacaatactaaaacttgccaagagtatggtcacatgacttgaaattggtgaaacaaaccttagccgattaggtctgtgtgcgaagcaatgcaagaaacagcgagtttaactccagtgtccgtgcacttagtggattagaagggcctacaaaaggcttgcaactgaaaatgaagaattatttaccacatttaagtgatattcaacattgtttacaaggcaacttcgatttcggcgaatttggattgattatcttccagaatagtagcgcgccgtctcagacctttttgaaaaggtctattggcagtatttcatcttatttcactttacttagcagtttaaccctaatccatatgggcttttttcgagctaccatttatgggggggggggtgctttccaccccccctctgaaaactgccttagactcatccgaattcaatacaacttggcacagttataaaacaggtaatttgcagcttgtagcggaatttgggtgtggctgccacgccttgtgacgtcacagtgacgtcacaaagctgaaaatctgtgaaaatcaggcttccaagttgaattcaagtttaatgaagattttgcatgaacttcatgcagtttttggttcagtttgtcaacatatgtgatgataaaataatattttattgaaattaacgattttggagtgatattttggcagaaattagccaattcttatgacgtcatttgtgcgattaatttattctaagtaaaaagagaccaaaata

Transcript

scaffold2847.g2.t1

AGAGGTTTACATTATGTGTTGAATTATTGCATGCCCTAGAGGATAATCTAGGAGCCACAGAATACAACCGGTTTTTATATCCGTGATGTTGTTCCTAGATCTTGCTGTTCAACACGAAAGAGCCCCTCGAAACGCAAAACAGCGAACTGACGACAGTGGTGGTCGATCACCATTAGCTGGACTGGCATCTCTTCGCCAAGAAGACAACCAAGGGCCCACCGATCTGAATTCAAGGTCTGCCAGTCCGAGTTTGCATATGTACCATTTCCAGTTCCCATCAAGGAAGCTGAACGAGCCTTATGTTGCAGACTGCCGACAAAGCAGTGTCCCATTGACCCCACCACTGACGCCTAAGAACCCTCCACATGTGCCAAAGTCTCCCGATGCGTTATATGAGCTGTCAGTCCGTGTTCTTCATTCAACCATAACTTGGGCACGAAATATCCCAACGTTTGTGGAACTGCCCTTCAAGGACCAGGCATTGCTTCTAGAAGAGAGCTGGGTGGATTTGTTTCTTCTGAGCCTCGCCCAATGGGATGTGGAGATTGATTTGCACGTGATGTTGAAAGCTGCAGGCATTGAAAATGACAATAGATCGACAAGTGATATAATGGCAGCTATTGCAGACTTGAACCATTTACAAAATATCATCAACAAATTTAAGAGTTTTAGATTAGATTCAACGGAGTATGCTTGCTTGAAGGCAATTTCTCTTTTTAAGCCAGAACTGAGGAATGTTCGATCCATAAGTCACGTAGAAAATCTTCAAGATCATGCCCAAGTCATGTTAGCTGAATACACGCGGTCGAGAAGCCCTGATGTTCCAGTCAGATATGGCAAGATGTTATTGTCATTAGCAGCTTTACGAACTATTAGTCCTAGACTTATTGAGTTTCATTTCTTTCGTGGATCGTTAGAAAATGTTCCAGTTGAAAAACTATTTGTAGATCATGGATATAGTGGAAATCTTTGCACGCAAGGACAAGCACGAGTACAGCACAGTGATATTAAGCAAGAGTAAATTTTTTAAATCCTTCTAGCCCGGTCTGACCACCATTGAATACTCAAATTTAAAATAAATTGTTTTCTTTGGCAAGAGATGGCACAAATTTGCCTaacggaatgaatttgatgaccaaggcagctatccttcttcttttgaaatattctcatgtcttccgttaacgattcttttcacatgcacgttgagtgaggtagctacataggttgatatcatcttttgtggtctgctttgttttacttcatggattgacaagtcgtctgtagatatccttttatttgctatcgtgaattctttaccttggtgttgcaatcaagaatcaacgggtacaattgttaaaggatctgtccatgttACAGAGAGTTACACAGTAGAATATTCTTTTGTTGCCCAACAGAAAATTTCAGAATTGCTGGATGTCTTATATTTGCATCTGGTTGTCTGTATGCCACTTTGAATCATGGGATGACAATAATTAACTTAATTATAAAAGATTATAACCAGAATCAATCAGATTGTATTTGTAACTTTATAACATTAGACAAGGACCTTTTCAAAGaggcctgggacggcgtgctacttttctggaagatgcggataatctgcgaagggcaatccccttctcactgcagacgttgaaatgcagttgcagtaaacaaattcggccaaggtttgtttacacccatttcaagtcatgtgatcaatctctcgaaaaaacatcttttgatttctctaacatatttcgtgccatgcaaagttatgccatgagtacaaaaattagcacaatactaaaacttgccaagagtatggtcacatgacttgaaattggtgaaacaaaccttagccgattaggtctgtgtgcgaagcaatgcaagaaacagcgagtttaactccagtgtccgtgcacttagtggattagaagggcctacaaaaggcttgcaactgaaaatgaagaattatttaccacatttaagtgatattcaacattgtttacaaggcaacttcgatttcggcgaatttggattgATTatcttccagaatagtagcgcgccgtctcagacctttttgaaaaggtctattgGCAGTATTTCATCTTATTTCACTTTACTTAGCAGTttaaccctaatccatatgggcttttttcgagctaccatttatgggggggggggtgctttccaccccccctctgaaaactgccttagactcatccgaattcaatacaacttggcacagttataaaacaggtaatttgcagcttgtagcggaatttgggtgtggctgccacgccttgtgacgtcacagtgacgtcacaaagctgaaaatctgtgaaaatcaggcttccaagttgaattcaagtttaatgaagattttgcatgaacttcatgcagtttttggttcagtttgtcaacatatgtgatgataaaataatattttattgaaattaacgattttggagtgatattttggcagaaattagccaattcttatgacgtcatttgtgcgattaatttattctaagtaaaaagagaccaaaata

Protein

Gene family

Family type	Membership / link
Transcription factor family	ESR-like · all TF in this species
Transcription factor family	Miscellaneous · all TF in this species
Transcription factor family	NGFIB-like · all TF in this species
Transcription factor family	RXR-like · all TF in this species
Transcription factor family	SF-like · all TF in this species
Transcription factor family	THR-like · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00104 all species →	Hormone_recep	Ligand-binding domain of nuclear hormone receptor	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035500 all species →	Homologous_superfamily	Nuclear hormone receptor-like domain superfamily	Interproscan
IPR000536 all species →	Domain	Nuclear hormone receptor, ligand-binding domain	Interproscan
IPR001723 all species →	Family	Nuclear hormone receptor	Interproscan
IPR033544 all species →	Family	Nuclear receptor subfamily 0 group B member 1/2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24081 all species →	NUCLEAR RECEPTOR SUBFAMILY 0 GROUP B	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000122 all species →	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0003714 all species →	Molecular Function	transcription corepressor activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0008134 all species →	Molecular Function	transcription factor binding	Interproscan
GO:0043433 all species →	Biological Process	negative regulation of DNA-binding transcription factor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold2847.g2.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.