Gene detail

Detailed information of scaffold286.g2.t3 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold286:3721...18451
NR annotation: no NCBI-NR hit recorded
Species abbreviation AAURI2 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold286.g2.t3

gttgtaaagaacacaatattatcactggcaaatcaagatgcttattatacaatattcaatgatttcattcgacaaaacccttcgctattggatgaattcaatcatggaatctttcttaaaacttggagagcaattcttgactttgaaaataaacattcatggttaaaaaggagagtaacaaagctgagaaaacatttcctggatagatctgatttgacagtgagaagagatgatgtccttggtagtgccatgcggtgtcttgcttacaaccataccatcagcattaataatttatcagtggatttttataatgaaccaggtatgtgtactgggccaaagaaagaatttttggtgtgcctgtgtaatgagattgtaaaaccaactatgaaacttttcacgcaaattgatgatcaacagtatagccctacaccactgactttctttgctgatattttatgggactactacaacagtccagcatacatcaatagcgtccaagatgatacaccaagtgaatcgagctggacctcacaggacaaaactcaatgctctactgattccggaatagaaacttcaagtcctgctaaaacgcagaccagccgccaagacaagagtccttccaaggaagctaatactcaggaggctagcagcccagaaaagagaagccgcatagttacgaatcaaattaagaatgagctcagaaaaaagttagacgcaatgaaatttattggaaggtttatcgctgcttgtatagccgaaggatggtatatcaatctgctgttgtcaaaaccatttattaaacaaatcttaggcctgccattaaaccacccagctgatctccagtctgttgataatggtttgtacaatggtgttgtgacatgggtgctggaaaatagtatcgatgaatatgaaatgccatttagtatcaactgcaaaaatccttgggatgggtcacgactagaagaagtgcaacttacgaaattcaatggccttgtcaccgacaagaataaggaagaatttgttgaacttgtctccaaattcaagttatgtgaatcaacagcaaaagaagttgaggcttttaaaagaggattccatttggaattgaaacaagagttgatttccgtatttacaccagatgaattttcgcttctgatgaatggtgttcaaaatattgatgtggatgactggaaacgaaacacaataggacttggtggtacacggcgtttcacaatatcaaaaagaggaggacaaagtaattcaattccaacagcagcgacatgttttaatatgattcaacttggtgattatgacaacgagaaggagctacgagaaaaggtattgattgccttacgacatggatgtgaaggattttcatggagttgagcttcataaatcataacttttttaaccacaaggaacattgacatccagggacttggtggtacacggcgtttcacaatatcaaaaagaggaggacagagtaattcaattccaacagcagcgacatgttttaatatgattcaacttggtgattatgacaacgagaaggagctacgagagaaggtattgattgccttacgacatggatgtgaaggattttcatggagttgagcttcattaatgataactttcttaaccacaaggaatattgacatccaggtagggcttagcatagattctgcacgcaggctaggtagggctaagatactcatgaatgtctttcttcttttgtaaatagtgcgtctgtaaaaagttttgttggtatactgtactnttatgcagatttgtctcacattgcagcaacttatatttacgatcaaaaatggattgaatgaatttaattgaatattggtcaaaacttgtctttcagattccaacagcagcgacatgttttaatatgattcaacttggtgattatgacaacgagaaggagctacgagaaaaggtattgattgccttacgacatggatgtgaaggattttcatggagttgagcttcataaatcataacttttttaaccacaaggaacattgacatccaggtaaagcttagcatagattctgcacgcaggctaggtagggctaagatactcatgaatgtctttcttcttttgtaaatagtgcgtctgtaaaaagttttgttggtatattcgtttttgatataccgatttctatgtgaaaaaaggccggcggaataacgagcggagatcaca

Transcript

scaffold286.g2.t3

GTTGTAAAGAACACAATATTATCACTGGCAAATCAAGATGCTTATTATACAATATTCAATGATTTCATTCGACAAAACCCTTCGCTATTGGATGAATTCAATCATGGAATCTTTCTTAAAACTTGGAGAGCAATTCTTGACTTTGAAAATAAACATTCATGGTTAAAAAGGAGAGTAACAAAGCTGAGAAAACATTTCCTGGATAGATCTGATTTGACAGTGAGAAGAGATGATGTCCTTGGTAGTGCCATGCGGTGTCTTGCTTACAACCATACCATCAGCATTAATAATTTATCAGTGGATTTTTATAATGAACCAGGTATGTGTACTGGGCCAAAGAAAGAATTTTTGGTGTGCCTGTGTAATGAGATTGTAAAACCAACTATGAAACTTTTCACGCAAATTGATGATCAACAGTATAGCCCTACACCACTGACTTTCTTTGCTGATATTTTATGGGACTACTACAACAGTCCAGCATACATCAATAGCGTCCAAGATGATACACCAAGTGAATCGAGCTGGACCTCACAGGACAAAACTCAATGCTCTACTGATTCCGGAATAGAAACTTCAAGTCCTGCTAAAACGCAGACCAGCCGCCAAGACAAGAGTCCTTCCAAGGAAGCTAATACTCAGGAGGCTAGCAGCCCAGAAAAGAGAAGCCGCATAGTTACGAATCAAATTAAGAATGAGCTCAGAAAAAAGTTAGACGCAATGAAATTTATTGGAAGGTTTATCGCTGCTTGTATAGCCGAAGGATGGTATATCAATCTGCTGTTGTCAAAACCATTTATTAAACAAATCTTAGGCCTGCCATTAAACCACCCAGCTGATCTCCAGTCTGTTGATAATGGTTTGTACAATGGTGTTGTGACATGGGTGCTGGAAAATAGTATCGATGAATATGAAATGCCATTTAGTATCAACTGCAAAAATCCTTGGGATGGGTCACGACTAGAAGAAGTGCAACTTACGAAATTCAATGGCCTTGTCACCGACAAGAATAAGGAAGAATTTGTTGAACTTGTCTCCAAATTCAAGTTATGTGAATCAACAGCAAAAGAAGTTGAGGCTTTTAAAAGAGGATTCCATTTGGAATTGAAACAAGAGTTGATTTCCGTATTTACACCAGATGAATTTTCGCTTCTGATGAATGGTGTTCAAAATATTGATGTGGATGACTGGAAACGAAACACAATAGGACTTGGTGGTACACGGCGTTTCACAATATCAAAAAGAGGAGGACAAAGTAATTCAATTCCAACAGCAGCGACATGTTTTAATATGATTCAACTTGGTGATTATGACAACGAGAAGGAGCTACGAGAAAAGGTATTGATTGCCTTACGACATGGATGTGAAGGATTTTCATGGAGTTGAGCTTCATAAATCATAACTTTTTTAACCACAAGGAACATTGACATCCAGGGACTTGGTGGTACACGGCGTTTCACAATATCAAAAAGAGGAGGACAGAGTAATTCAATTCCAACAGCAGCGACATGTTTTAATATGATTCAACTTGGTGATTATGACAACGAGAAGGAGCTACGAGAGAAGGTATTGATTGCCTTACGACATGGATGTGAAGGATTTTCATGGAGTTGAGCTTCATTAATGATAACTTTCTTAACCACAAGGAATATTGACATCCAGGTAGGGCTTAGCATAGATTCTGCACGCAGGCTAGGTAGGGCTAAGATACTCATGAATGTCTTTCTTCTTTTGTAAATAGTGCGTCTGTAAAAAGTTTTGTTGGTATACTGTACTNTTATGCAGATTTGTCTCACATTGCAGCAACTTATATTTACGATCAAaaatggattgaatgaatttaattgaatATTGGTCAAAACTTGTCTTTCAGATTCCAACAGCAGCGACATGTTTTAATATGATTCAACTTGGTGATTATGACAACGAGAAGGAGCTACGAGAAAAGGTATTGATTGCCTTACGACATGGATGTGAAGGATTTTCATGGAGTTGAGCTTCATAAATCATAACTTTTTTAACCACAAGGAACATTGACATCCAGGTAAAGCTTAGCATAGATTCTGCACGCAGGCTAGGTAGGGCTAAGATACTCATGAATGTCTTTCTTCTTTTGTAAATAGTGCGTCTGTAAAAAGTTTTGTTGGTATATTCGTTTTTGATATACCGATTTCTATGTGAAAAAAGGCCGGCGGAATAACgagcggagatcaca

Protein

Gene family

Family type	Membership / link
Ubiquitin family	E3\|E3 activity\|HECT · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00632 all species →	HECT	HECT-domain (ubiquitin-transferase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000569 all species →	Domain	HECT domain	Interproscan
IPR035983 all species →	Homologous_superfamily	HECT, E3 ligase catalytic domain	Interproscan
IPR050409 all species →	Family	E3 ubiquitin-protein ligase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11254 all species →	HECT DOMAIN UBIQUITIN-PROTEIN LIGASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004842 all species →	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0000209 all species →	Biological Process	protein polyubiquitination	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold286.g2.t3.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.