Gene detail

Detailed information of scaffold287.g2.t1 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold287:17117...70304
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold287.g2.t1

atggaagagacaaaacaacaaacctaatttgattttggaaagttaggttctggaatgaaagcaatttgcgcgagctggacaagctgttactgcagcttggtgctaaaagcaaaggttatcgagggagaaatgatttgctgttattgaattgcgctattccactgagaattcccatcatggaaagctgtacagatgccaagccggcaatgtcaatgaactcgattagattagtacacaaaactttacgcagattcaatgaaatgacccagaagaggcaatcaagaaactgaagaaagggaacaaaggcagtttgaaatcacactttgaatacagtttgcctcgaggggttttcttcatttgcttcaaaacaaaggagttccaaagatgtcctctccacctggagctccattatttcccttcaagttagagcgaccaaaaatcaatccaaatgcaattcctggcaggaaagagttattggaattctttagcagaaaaaagttatcaaaatttgttgaagtgtttccacttacagtaaactttgatttcttcaaaacaatgggtgaagatgatttcaatgagtatggaatttgtgaggaagaggatgttaaaattcttcttgatgcagtcaaagaagctcaagatgaagaggacaatgagactgagcttgcttttgaagaaagccagaagattagttcggaagacaaagcagacttggataagctggattgcagtgcttgtggcttctcgttgatcaagtcggacgaatcaacaaccaatcttgtccgaatgcgaaatcatccatctcttgggaattcggatccgtcaatatcatcatcatgtggagacgtctccagaaaattcagctcatgtggattagcactgaggaggcccagaagtttagtgccgcattcgccttctccgccaaggcccggttcacctgcctcggcacttgcactgaggaggcccagaagtttagtgccgcattcgccttctccgccaaggcccggttcacctgcctcggcccttgattcacctgaagaaattcctgctcaactttcaccatgtggtacttttcacagccccatgctcttcccatttggaagaagccacagtctgcagagtgggaggagatggtctgtcgcttctttaaattcgtcaggatacagcacaaatactcctggctcgtctggcatgtcttcgcgaacgtcgtcccaagaaaaaattaatggtcctgatgacatttggctggcacatcagtttagccatgatagcacattgagtgacatagatgatgaaatgcacacaggtcgaccacattctcctcggcttggatttagactgagatcgagaagtttaagccccagtcgaagtgacgatgactccgcacttaataatttatacaacgagcgattcccaaacgcaaaactgcagatggaagaacgtctacaagaatttgtttctgaattttcaacggaggaaatcaacataaattatcctgacccagctttgaatttcgtttgccatcagattgtaggaattagtaaagaaattcttcgaaaatcgcaagatcctgatggaaaaataacaagtgattatttctatggagtatcagatgcaatggagaggctcatttctgagacaaacagaggtttacgaattgcagcgcttaatgttgtatcattacgtaagcaccattgtgaaattgagcacgtgataaacgagcacaagtttcacattctgggtttgaatgaaactaggttaagtaaagatattaaggacccagaggtagacctagacggctttgaaattcaccgtaaagatagagatgttaacggcggtggtgtagctatctatgtacattcgatcattagccataatcgtagatatgatattgatgatccactattggaaattgaggccgtagagatcaccccccttcgtgccaaaagcttcatagtcatttgttggtacagacccccctcgcagggcaacgaccaggatagttttgcggcattaaggaacctactctcagctgtagatgcagaggttgtgtcgaggatattagaaaaaattgcacacgaccaattaatggagtatctgaaagagcaaaacaaactttgtttgaaccaatttgcatttcaaaaactgcacagtacactgacatgtctattgaatgttatagacccatggttcaagaactctgatgagggtaaaataaacttgagtatatttcttgatcttaaaaaagcattcgataccgttgaccataaaatcttattgtcaaagctacgagagtatggtgccgacggtacttcccacgactggttcacttcttatctgaccaatagggagcagttctgttattttgatggagctagctccagcacaagcagcataaagtgtggtattccgcagggctcgtgtttgggacccttgcttttcatactatacattaatgattttgagaactgtctggaaagcatgaacccaaatatgtatgccgatgatacatgtgtgaatatcgcgtcggaaaacctgaatgaacttctaacagatttgaaaaacgagctagaaaatatatcgaactggatgaggatcaataaacttagtttgaatgccagcaaaagtgaatatatggttataagccataggcgacaattgaatagggtaggtgatgatttgccagatcttgtcctcaataatgaagttatcaaaagggttgacaagacaaaatatttaggaatcaacattgatgagagccttacttggaaagagcagtacaaaactatcaaaaacaagctgaaagggggcttgagctccctgagaaagctgaaagacatccttccgcaaaggaaacttgaccaggtctacaaagctctctttgaaagccaccttcgctatggcgacattgtttggtgtactctttccaacaccaaactatcccaactgcaacgattacagacaagggcaaagaagctaatactgaacgccaagtataaggacggttggaactgtaaatggctcaatgtaaagtctttgctctcatttgacaaaggagtcatgacatataaaattctgcatggcctttgtcccgaaaatcttcgccataagttcactgaaagatccatgatttcagagcatagaaccagaaatcatggagatctgcaaattcccaaagttaggttagaatatgcaaagcgaagtttctacttctctggtgtcaaaaattggaatgatatcccgtacaacattcgagaacaagaatcaatcgctcgttttaaaacaggttttagaaagtatcttttgaacctacaaaacccaaacacgaccccttggtagagcagcatatttaaattatttacaatcttttctttaaattttttctttgagataattcgtaaatacgctgaaaggttttttcgtgtataaatattgataaaatgaaaatgaaatg

Transcript

scaffold287.g2.t1

ATGGAAGAGACAAAACAACAAACCTAATTTGATTTTGGAAAGTTAGGTTCTGGAATGAAAGCAATTTGCGCGAGCTGGACAAGCTGTTACTGCAGCTTGGTGCTAAAAGCAAAGGTTATCGAGGGAGAAATGATTTGCTGTTATTGAATTGCGCTATTCCACTGAGAATTCCCATCATGGAAAGCTGTACAGATGCCAAGCCGGCAATGTCAATGAACTCGATTAGATTAGTACACAAAACTTTACGCAGATTCAATGAAATGACCCAGAAGAGGCAATCAAGAAACTGAAGAAAGGGAACAAAGGCAGTTTGAAATCACACTTTGAATACAGTTTGCCTCGAGGGGTTTTCTTCATTTGCTTCAAAACAAAGGAGTTCCAAAGATGTCCTCTCCACCTGGAGCTCCATTATTTCCCTTCAAGTTAGAGCGACCAAAAATCAATCCAAATGCAATTCCTGGCAGGAAAGAGTTATTGGAATTCTTTAGCAGAAAAAAGTTATCAAAATTTGTTGAAGTGTTTCCACTTACAGTAAACTTTGATTTCTTCAAAACAATGGGTGAAGATGATTTCAATGAGTATGGAATTTGTGAGGAAGAGGATGTTAAAATTCTTCTTGATGCAGTCAAAgaagctcaagatgaagaggacaatgagactgagCTTGCTTTTGAAGAAAGCCAGAAGATTAGTTCGGAAGACAAAGCAGACTTGGATAAGCTGGATTGCAGTGCTTGTGGCTTCTCGTTGATCAAGTCGGACGAATCAACAACCAATCTTGTCCGAATGCGAAATCATCCATCTCTTGGGAATTCGGATCCGTCAATATCATCATCATGTGGAGACGTCTCCAGAAAATTCAGCTCATGTGGATTAGCACTGAGGAGGCCCAGAAGTTTAGTGCCGCATTCGCCTTCTCCGCCAAGGCCCGGTTCACCTGCCTCGGCACTTGCACTGAGGAGGCCCAGAAGTTTAGTGCCGCATTCGCCTTCTCCGCCAAGGCCCGGTTCACCTGCCTCGGCCCTTGATTCACCTGAAGAAATTCCTGCTCAACTTTCACCATGTGGTACTTTTCACAGCCCCATGCTCTTCCCATTTGGAAGAAGCCACAGTCTGCAGAGTGGGAGGAGATGGTCTGTCGCTTCTTTAAATTCGTCAGGATACAGCACAAATACTCCTGGCTCGTCTGGCATGTCTTCGCGAACGTCGTCCCAAGAAAAAATTAATGGTCCTGATGACATTTGGCTGGCACATCAGTTTAGCCATGATAGCACATTGAGTGACATAGATGATGAAATGCACACAGGTCGACCACATTCTCCTCGGCTTGGATTTAGACTGAGATCGAGAAGTTTAAGCCCCAGTCGAAGTGACGATGACTCCGCACTTAATAATTTATACAACGAGCGATTCCCAAACGCAAAACTGCAGATGGAAGAACGTCTACAAGAATTTGTTTCTGAATTTTCAACGGAGGAAATCAACATAAATTATCCTGACCCAGCTTTGAATTTCGTTTGCCATCAGATTGTAGGAATTAGTAAAGAAATTCTTCGAAAATCGCAAGATCCTGATGGAAAAATAACAAGTGATTATTTCTATGGAGTATCAGATGCAATGGAGAGGCTCATTTCTGAGACAAACAGAGGTTTACGAATTGCAGCGCTTAATGTTGTATCATTACGTAAGCACCATTGTGAAATTGAGCACGTGATAAACGAGCACAAGTTTCACATTCTGGGTTTGAATGAAACTAGGTTAAGTAAAGATATTAAGGACCCAGAGGTAGACCTAGACGGCTTTGAAATTCACCGTAAAGATAGAGATGTTAACGGCGGTGGTGTAGCTATCTATGTACATTCGATCATTAGCCATAATCGTAGATATGATATTGATGATCCACTATTGGAAATTGAGGCCGTAGAGATCACCCCCCTTCGTGCCAAAAGCTTCATAGTCATTTGTTGGTACAGACCCCCCTCGCAGGGCAACGACCAGGATAGTTTTGCGGCATTAAGGAACCTACTCTCAGCTGTAGATGCAGAGGTTGTGTCGAGGATATTAGAAAAAATTGCACACGACCAATTAATGGAGTATCTGAAAGAGCAAAACAAACTTTGTTTGAACCAATTTGCATTTCAAAAACTGCACAGTACACTGACAtgtctattgaatgttatagacccatggttcaagaactctgatgagggtaaaataaacttgagtatatttcttgatcttaaaaaagcattcgataccgttgaccataaaatcttattgtcaaagctacgagagtatggtgccgacggtacttcccacgactggttcacttcttatctgaccaatagggagcagttctgttattttgatggagctagctccagcacaagcagcataaagtgtggtattccgcagggctcgtgtttgggacccttgcttttcatactatacattaatgattttgagaactgtctggaaagcatgaacccaaatatgtatgccgatgatacatgtgtgaatatcgcgtcggaaaacctgaatgaacttctaacagatttgaaaaacgagctagaaaatatatcgaactggatgaggatcaataaacttagtttgaatgccagcaaaagtgaatatatggttataagccataggcgacaattgaatagggtaggtgatgatttgccagatcttgtcctcaataatgaagttatcaaaagggttgacaagacaaaatatttaggaatcaacattgatgagagccttacttggaaagagcagtacaaaactatcaaaaacaagctgaaagggggcttgagctccctgagaaagctgaaagacatccttccgcaaaggaaacttgaccaggtctacaaagctctctttgaaagccaccttcgctatggcgacattgtttggtgtactctttccaacaccaaactatcccaactgcaacgattacagacaagggcaaagaagctaatactgaacgccaagtataaggacggttggaactgtaaatggctcaatgtaaagtctttgctctcatttgacaaaggagtcatgacatataaaattctgcatggcctttgtcccgaaaatcttcgccataagttcactgaaagatccatgatttcagagcatagaaccagaaatcatggagatctgcaaattcccaaagttaggttagaatatgcaaagcgaagtttctacttctctggtgtcaaaaattggaatgatatcccgtacaacattcgagaacaagaatcaatcgctcgttttaaaacaggttttagaaagtatcttttgaacctacaaaacccaaacacgaccccttggtagagcagcatatttaaattatttacaatcttttctttaaattttttctttgagataattcgtaaatacgctgaaaggttttttcgtgtataaatattgataaaatgaaaaTGAAATG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08926 all species →	DUF1908	Domain of unknown function (DUF1908)	Domain	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR023142 all species →	Homologous_superfamily	Microtubule-associated serine/threonine-protein kinase, pre-PK domain superfamily	Interproscan
IPR036691 all species →	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR015022 all species →	Domain	Microtubule-associated serine/threonine-protein kinase, pre-PK domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR33332 all species →	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004674 all species →	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0000287 all species →	Molecular Function	magnesium ion binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold287.g2.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.