Gene detail

Detailed information of scaffold288.g16.t2 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold288:247099...271444
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold288.g16.t2

gtagtttgtattagttgtattttagtttatattaattccagggggtagacatgacattttgctcctcctggtccccgtccttgtagtgtggtatagtagattgtaggtagtgtttaggtgttggcatttgtattagcaatttggtgacatttgattgaaaaatatgctgtgaaaacaaccacataatctgaataaattgtgaataatttacatctcagctgggtcaaaatcgtcaattcaacattgcaagaagatacatttgagtctagaaggtggtaaggaaaacaaatttagcatattttcttctttgtcaaagttgcaccaagatgattgatgtcaatggaattcgactggtgcttttgttaatgctcccaagcattaccatagcagtgacatgcagttcaagattttactgccgaacgattgagatcaaatacttagcaatggaagaaaaagccggagtactcttgaatgcaactgctgtcaaaacataccaaacgaagaatataacacaatgccagacgttttgtatcagagaaaacagctgccagtccatcaacttgaatatgagtaaacaaggaagctatggttgtcaattactgaacgtcaacatgtacggcaatgcctctttactggtgaccaacaagcatttccttcacctatatgttccaacgttttgtatcagagaaaacagctgccagtccatcaacttgaatatgagtaaacaaggaagctatggttgtcaattactgaacgtcaacatgtacggcaatgcctctttactggtgaccaacaagcatttccttcacctatatgttccaagcaaatgtgaatcacagccatgcttgtatggtggaagatgcgttcccatatacaaaaatgattcctacacttgtgagtgcaagagcaacagtacattcattacaaagggaaagcattgtgaaacggtgtacagtggatatgcctctgccttcctttattggtcattcaacaaaggtccttcatcagctagcaacttcattgcaaaatcttacacattgggtgggcctaatgtttatatcgccgagcctggacgtaaattgccagttatggaatgtaaattgtctatggcatcatgctcccaactttgggatagcgctccatgtctcaacaacttcgatagctgtttaaaattcgtaacatacagcttatgggtgaaattttccaaaaaagaaacaaaatggtccaggaataaattcatatttgatacaaattcgcctggaagttacagagaacttcgcttcattggtcttccaaacaagaacgatggatactacttccaaatctctttgaccacatccaaacgttggatcgttgcaaactttggaaagaatgttacacggcaacattggaatcatttcacattcactgtcaatgatgatgctggagtgtgtgcctatgttaatggggtgaaagaaaagtgtgaaaataatccgagttctgtgtcattaaatggctatattaacgtaccaatgcgacttggtggtacatgggcagcaaattcagtgcctgacatgtttgttgacgattttgcattatggaaggctgctttaacagaggaagaagtgcgtgcattgtacgaatcgagcaaacaagatggcatatcaatcaacaatgcctgaaaagaatctcccgttcctattggcgttagcctaactttgcacgcagatcagttgtcgtgctcatgaccactttagattgatctccactacagtacgtacccgcaaataagaacccccttgcataagaaacaggcctcattttcttcaaaaagggctcttttaataagaaacaattttaggtctgaaatttaaatgtttcttattttcagcgagccatgccataaacagggaatgtccccagggggggggggtactctggtatattcaggatagaggtgctcaggttacttttttgggtctaaaatttaggcaaggattatttttttgggtcaatgatttgtacagttatttttttgggttcaagaaattctggcttacttttttgggtctcaaatatgagaaaaaaggcgttggtactgaagagaaatgttttcttgtccaaaaaatcttcttacccaactctaaaagtgacagcaaaaacatctacccaacaattttcaggttgaaaaaattttgtccaacccttacctataaacatggttccaatgt

Transcript

scaffold288.g16.t2

gtagtttgtattagttgtattttagtttatattaattccagggggtagacatgacattttgctcctcctggtccccgtccttgtagtgtggtatagtagattgtaggtagtgtttagGTGTTGGCATTTGTATTAGCAATTTGGTGACATTTGATTGAAAAATATGCTGTGAAAACAACCACATAATCTGAATAAATTGTGAATAATTTACATCTCAGCTGGGTCAAAATCGTCAATTCAACATTGCAAGAAGATACATTTGAGTCTAGAAGGTGGTAAGGAAAACAAATTTAGCATATTTTCTTCTTTGTCAAAGTTGCACCAAGATGATTGATGTCAATGGAATTCGACTGGTGCTTTTGTTAATGCTCCCAAGCATTACCATAGCAGTGACATGCAGTTCAAGATTTTACTGCCGAACGATTGAGATCAAATACTTAGCAATGGAAGAAAAAGCCGGAGTACTCTTGAATGCAACTGCTGTCAAAACATACCAAACGAAGAATATAACACAATGCCAGACGTTTTGTATCAGAGAAAACAGCTGCCAGTCCATCAACTTGAATATGAGTAAACAAGGAAGCTATGGTTGTCAATTACTGAACGTCAACATGTACGGCAATGCCTCTTTACTGGTGACCAACAAGCATTTCCTTCACCTATATGTTCCAACGTTTTGTATCAGAGAAAACAGCTGCCAGTCCATCAACTTGAATATGAGTAAACAAGGAAGCTATGGTTGTCAATTACTGAACGTCAACATGTACGGCAATGCCTCTTTACTGGTGACCAACAAGCATTTCCTTCACCTATATGTTCCAAGCAAATGTGAATCACAGCCATGCTTGTATGGTGGAAGATGCGTTCCCATATACAAAAATGATTCCTACACTTGTGAGTGCAAGAGCAACAGTACATTCATTACAAAGGGAAAGCATTGTGAAACGGTGTACAGTGGATATGCCTCTGCCTTCCTTTATTGGTCATTCAACAAAGGTCCTTCATCAGCTAGCAACTTCATTGCAAAATCTTACACATTGGGTGGGCCTAATGTTTATATCGCCGAGCCTGGACGTAAATTGCCAGTTATGGAATGTAAATTGTCTATGGCATCATGCTCCCAACTTTGGGATAGCGCTCCATGTCTCAACAACTTCGATAGCTGTTTAAAATTCGTAACATACAGCTTATGGGTGAAATTTTCCAAAAAAGAAACAAAATGGTCCAGGAATAAATTCATATTTGATACAAATTCGCCTGGAAGTTACAGAGAACTTCGCTTCATTGGTCTTCCaaacaagaacgatggatactacttccaaatctctttgaccacatccaaacgttggatcgttgcaaactttggaaagaatgttacacggcaacattggaatcatttcacattcactgtcaatgatgatgctggagtgtgtgcctatgttaatggggtgaaagaaaagtgtgaaaataatccgagttctgtgtcattaaatggctatattaacgtaccaatgcgacttggtggtacatgggcagcaaattcagtgcctgacatgtttgttgacgattttgcattatggaaggctgctttaacagaggaagaagtgcgtgcattgtacgaatcgagcaaacaagatggcatatcaatcaacaatgcctgaaaagaatctcccgttcctattggcgttagcctaactttgcacgcagatcagttgtcgtgctcatgaccactttagattgatctccactacagtacgtacccgcaaataagaacccccttgcataagaaacaggcctcattttcttcaaaaagggctcttttaataagaaacaattttaggtctgaaatttaaatgtttcttattttcagCGAGCCATGCCATAAACAGGGAATGTCCCCAGGGGgggggggtactctggtatattcaggatagaggtgctcaggttacttttttgggtctaaaatttaggcaaggattatttttttgggtcaatgatttgtacagttatttttttgggttcaagaaattctggcttacttttttgggtctcaaatatgagaaaaaaggcgttggtactgaagagaaatgttttcttgtccaaaaaatcttcttacccaactctaaaagtgacagcaaaaacatctacccaacaattttcaggttgaaaaaattttgtccaacccttacctataaacatggttccaatgt

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00008 all species →	EGF	EGF-like domain	Domain	Interproscan
PF00024 all species →	PAN_1	PAN domain	Domain	Interproscan
PF13385 all species →	Laminin_G_3	Concanavalin A-like lectin/glucanases superfamily	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR003609 all species →	Domain	PAN/Apple domain	Interproscan
IPR013320 all species →	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan

PANTHER

No PANTHER signature was detected for scaffold288.g16.t2. This gene does have a gene model — the search simply returned no hit.

Gene Ontology

No Gene Ontology signature was detected for scaffold288.g16.t2. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold288.g16.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.