Gene detail

Detailed information of scaffold2920.g2.t1 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold2920:6556...18144
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold2920.g2.t1

ctaaaaattctggtaatggtgttcaatgtccccatcgattaagaacagatttgttctgcttgtgaccataactgagtggaaatccgttctttcgccttgaaattgaatgctatttaacgttgaattgttttttgttacttcttcaaaattctgggattgggtatcaatatctgacatatattctgggatagggaatatgtattggatgttctttttcaattcagttattagcacgattttacaagagcaacatgcattgtcattgatgaaaataatgttgtctggtgatgtagaactgaatcctggtcctgtatctgtcaataacaatgatcaggcaatagtttatgctagcatgggctgttcaaatatgattttgactcagcgattatttcagattggattgagaccatttgatgttggaggaggaggagattgtttcttcagatctgtatcacatcagctttatggagattctgtataccatccgtttgttagagatgcaggagtacgctatttaatacagcaccaagagaggttcagtcgattcattgaaggaagtgagcaattttcttggcctgtgtatctaaataatatgtcaagattaggaacttggtgtgacaatataattgtgcaggctgtgtccgatgctctcaatatcacgattaatattgctgaatcagttgaagcattttcaccatacactattattagtccatgcgaaatgtttccttggatgacttcgatttttataggccacatagatgaaacacattatgtttccacagttccagcaatggcactgttgttatcgcagagaaacagtcaaattagtgaaattgtgaataatcaaacagtgcaatctgttacagtggcatctgttccatcaaataaaggtactgaggagtgtgataattcagtgtccaagggttttgaaatcatagaatcgaacagacagaacagaaaaagatatatgagaaattatagagaaaaaatgaaacagaagcaaagtatcgagacgagtaatattccccgaactacttttgaaggtgaaaatatgtcaaaagcaagaaaaaatgatatgaatgcaactccaaatagcggacttgagagcagcgttgaagaaagtgaaattaaaatatgtgagaggaacgacaaacaatataaaagagaggcatttaagacgattgaggggtccgactttgccgattacaaatatgaacaagagacatcggatggatatttcatgaccgagaaagcagccccattttaatcctttaagtagtgctgtttcatatttctcaaccttttcattattgtttgcttttgcagagaaataaccagtggatatccctgcaagctgccagcatcaaaattgtcagaatgaagacattaacaactacctatccaactctaaaggcaggattatcaataagaaacgagagtaaagcaagccgtgtacacaatcctggtcaattcttgtcaatgatcagacgctgaatactctatcgaacggattgtaacaccttggatgggtttttgaaagattaaatgacgaatactgcatatcacttatatcgattgaagtgtgtaacattgaaatcagttacgaaactgaacacagcatcagcatcaacgcaaaagatttctgtcatcaatcattcaggaacatccctcactctgcacttaaacttgaaaagcaagacttctctacacaagtaaagcagtatgttataccttcctcaaagaccacatcaacgatgaattctttgcagtatatgattgttaatggaaataactctcatccttaacctgtcaaatacatatagcagagcttggctactactggaatgtgttcgcattgcaactgtctacatcttgtttgtctaaagtcaaatgggaacattgcagcattgccgaagaggtgtcttatccgagaaccttacatgttactcaaaagtggatattttgccgacattaattttgttggctaatgaactctgtactgctgaaaggcttggtagcagcctatgccattggtagatttactagtatttttagactttattcatctctacattgatcaagaaaatctcacattctaa

Transcript

scaffold2920.g2.t1

ctaaaaattctggtaatggtgttcaatgtccccatcgattaagaacagatttgttctgcttgtgaccataactgagtggaaatccgttctttcgccttgaaattgaatgctatttaacgttgaattgttttttgttacttcttcaaaattctgggattgggtatcaatatctgacatatattctgggataggGAATATGTATTGGATGTTCTTTTTCAATTCAGTTATTAGCACGATTTTACAAGAGCAACATGCATTGTCATTGATGAAAATAATGTTGTCTGGTGATGTAGAACTGAATCCTGGTCCTGTATCTGTCAATAACAATGATCAGGCAATAGTTTATGCTAGCATGGGCTGTTCAAATATGATTTTGACTCAGCGATTATTTCAGATTGGATTGAGACCATTTGATGTTGGAGGAGGAGGAGATTGTTTCTTCAGATCTGTATCACATCAGCTTTATGGAGATTCTGTATACCATCCGTTTGTTAGAGATGCAGGAGTACGCTATTTAATACAGCACCAAGAGAGGTTCAGTCGATTCATTGAAGGAAGTGAGCAATTTTCTTGGCCTGTGTATCTAAATAATATGTCAAGATTAGGAACTTGGTGTGACAATATAATTGTGCAGGCTGTGTCCGATGCTCTCAATATCACGATTAATATTGCTGAATCAGTTGAAGCATTTTCACCATACACTATTATTAGTCCATGCGAAATGTTTCCTTGGATGACTTCGATTTTTATAGGCCACATAGATGAAACACATTATGTTTCCACAGTTCCAGCAATGGCACTGTTGTTATCGCAGAGAAACAGTCAAATTAGTGAAATTGTGAATAATCAAACAGTGCAATCTGTTACAGTGGCATCTGTTCCATCAAATAAAGGTACTGAGGAGTGTGATAATTCAGTGTCCAAGGGTTTTGAAATCATAGAATCGAACAGACAGAACAGAAAAAGATATATGAGAAATTATAGAGAAAAAATGAAACAGAAGCAAAGTATCGAGACGAGTAATATTCCCCGAACTACTTTTGAAGGTGAAAATATGTCAAAAGCAAGAAAAAATGATATGAATGCAACTCCAAATAGCGGACTTGAGAGCAGCGTTGAAGAAAGTGAAATTAAAATATGTGAGAGGAACGACAAACAATATAAAAGAGAGGCATTTAAGACGATTGAGGGGTCCGACTTTGCCGATTACAAATATGAACAAGAGACATCGGATGGATATTTCATGACCGAGAAAGCAGCCCCATTTTAATCCTTTAAGTAGTGCTgtttcatatttctcaaccttttcattattgtttgcttttgcagagaaataaccagtggatatccctgcaagctgccagcatcaaaattgtcagaatgaagacattaacaactacctatccaactctaaaggcaggattatcaataagaaacgagagtaaagcaagccgtgtacacaatcctggtcaattcttgtcaatgatcagacgctgaatactctatcgaacggattgtaacaccttggatgggtttttgaaagattaaatgacgaatactgcatatcacttatatcgattgaagtgtgtaacattgaAAtcagttacgaaactgaacacagcatcagcatcaacgcaaaagatttctgtcatcaatcattcaggaACATCCCTCACTCTGCACTTAAACTTGAAAAGCAAGACTTCTCTACACAAGTAAAGCAGTATGTTATACCTTCCTCAAAGACCACATCAACGATGAATTCTTTGCAGTATATGATTGTTAATGGAAATAACTCTCATCCTTAACCTGTCAAATACATATAGCAGAGCTTGGCTACTACTGGAATGTGTTCGCATTGCAACTGTCTACATCTTGTTTGTCTAAAGTCAAATGGGAACATTGCAGCATTGCCGAAGAGGTGTCTTATCCGAGAACCTTACATGTTACTCAAAAGTGGATATTTTGCCGACATTAATTTTGTTGGCTAATGAACTCTGTACTGCTGAAAGGCTTGGTAGCAGCCTATGCCATTGGTAGATTTACTAGTATTTTTAGACTTTATTCATCTCTACATTGATCAAGAAAATCTCACATTCTAA

Protein

Gene family

Family type	Membership / link
Ubiquitin family	DUB\|OTU\|OTU · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02338 all species →	OTU	OTU-like cysteine protease	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003323 all species →	Domain	OTU domain	Interproscan
IPR050704 all species →	Family	OTU domain-containing ubiquitin thioesterase	Interproscan
IPR038765 all species →	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12419 all species →	OTU DOMAIN CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004843 all species →	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0016579 all species →	Biological Process	protein deubiquitination	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold2920.g2.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.