Gene detail

Detailed information of scaffold294.g3.t2 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold294:33230...42914
NR annotation: no NCBI-NR hit recorded
Species abbreviation AAURI2 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold294.g3.t2

aacgagcgagataggattgggtgttggggattttttaacttcaaagtttctatattatctcttatcatttttaacgatattttatctggttgtattccagatttaactgttagaagcttcatcaagatttccactggctttaccaagattgggagagatttgttaattttgaagagatttcaactggctttattccagaattggaacgacttacgacgatcagaatggaataatggtgatatggttaatcgataatcatcggcatgttgagacgaaaattactcggacatggaaagattttcatgctgtatatagcgataattgcatctgttgtaattgcggataagaatgcggataagaatcatgcaaagaaaccctcaaagtataaactgacgaacgttctgagtgctcttgcacctgaaaaaggctctgcaaaagtggtaaacaccccaaccagtagtgcccatggaagtaagaaagcaagtgatgaatccaaaaaaactgatattttagcaaatgctatgactcagctccaaagtgatggccagccacaagaagtttcagagcctgcacgcgattatgacttagcagcacaacggagaatggaaaatcctggagaaccccgtgttattaatctccctggaatgatcaacgtatttggtccacctccaaaacgcgggtttcaacgaccgcatcatgatcccttacatgttcttcaagttccaagcctgtcaagacgaaatggacgcgacaattatgaactggtttcacctcattttaactcagagaatgttcccgtacatttttatccacatgtccgtgcaccggaagtcactggcggcaaaccaagacatttgtttttaccctttcctagagattatggcctaggacctcacgccggtggattgcacggcggtatgcatggcgattttcctggccgatttgtcggtggctttggcggtggtttaggcggtggcttaggcggtggtttaggcggtggcttagacggtggcttaggtggtgggttcggccacggatcacatggcgccggagcagacggttttggcgtggccggactaactccattccatgataacgggattattgatcacacagtcagtgacatgcatctgccggggtacgccccgtttgctcctatcgcggatgatcatttacctggacatttaccagaccatttaccggaccatttaccggaccaggtccaagattatcatgaccacgaacccggcagggttgacattgaaggccatgagatggggcggtttgtgaaaatgccaggatcgcaaatcatgatgcacgctccaaaacacgtgtttgagcccggaaaggagctgacacttgataatggtcatgaatttcacatgaataacgttatgcatgttgtgcagcatggacatcaccatcgtcatcatcaccatgacgatgatgatgatgattacggacacgatgatcatttttcgcatgatgatcattatgatcatgaacacgatttacacgataaccacgatattgaacacgatgatcacgatatagtgcacgatgatcacgatattgggcacgatgaccacgatattacacacgatgatcacggtgatcgtctggttattgcacctgatgataatgatcagtatgactcacatggttcccctgtgtctattgctgaacctgagaacattgtgcatgagcaccatagtgttgaacatcatcatcattgggtgaaagcacgttgttacccaaatccttgccgcaatgctggtacatgcactgccatggaacatggataccaatgcacttgctctattggatacaaaggctcacattgcgaagaaattaatcaatgtcagcctaacccttgcaaaaatggtggtgactgttatgagacgggagaaggattccagtgcacatgtacaagaggctataagggagagtattgtgaagtgatcaacagatgtcatcctaatccttgtaagaatgatgcgttttgtcatgatcttgaagatgattatcgatgtggatgtccatctggattcatgggcaagaattgtgaaggtgtggactactgcacgaacaatccttgcaaaaatggtggaacatgcatcaatctggatgataaattcgaatgtatttgctctgaagctgctaaaggtctcagatgtgaagaatttgatcactgccacaactctccttgcttaaatggaggtgcttgtacaaactctgcatcttcctacacttgctcctgtttagatggatattcaggatcccgttgtgcagccgagagtcattgtcattccaacccttgtttgaatggtggtctttgcactgagagaactggcggctttagttgtgcatgctcggaacactggactggaggaacttgccaaggttagtacagactatcatcatttccatggaaaaaatagttttgacactctgcccttttaggcaaccgtgtttgggcatattgataagaaaacatatgtttcaaa

Transcript

scaffold294.g3.t2

AACGAGCGAGATAGGATTGGGTGTTGGGGATTTTTTAACTTCAAAGTTTCTATATTATCTCTTATCATTTTTAACGATATTTTATCTGGTTGTATTCCAGATTTAACTGTTAGAAGCTTCATCAAGATTTCCACTGGCTTTACCAAGATTGGGAGAGATTTGTTAATTTTGAAGAGATTTCAACTGGCTTTATTCCAGAATTGGAACGACTTACGACGATCAGAATGGAATAATGGTGATATGGTTAATCGATAATCATCGGCATGTTGAGACGAAAATTACTCGGACATGGAAAGATTTTCATGCTGTATATAGCGATAATTGCATCTGTTGTAATTGCGGATAAGAATGCGGATAAGAATCATGCAAAGAAACCCTCAAAGTATAAACTGACGAACGTTCTGAGTGCTCTTGCACCTGAAAAAGGCTCTGCAAAAGTGGTAAACACCCCAACCAGTAGTGCCCATGGAAGTAAGAAAGCAAGTGATGAATCCAAAAAAACTGATATTTTAGCAAATGCTATGACTCAGCTCCAAAGTGATGGCCAGCCACAAGAAGTTTCAGAGCCTGCACGCGATTATGACTTAGCAGCACAACGGAGAATGGAAAATCCTGGAGAACCCCGTGTTATTAATCTCCCTGGAATGATCAACGTATTTGGTCCACCTCCAAAACGCGGGTTTCAACGACCGCATCATGATCCCTTACATGTTCTTCAAGTTCCAAGCCTGTCAAGACGAAATGGACGCGACAATTATGAACTGGTTTCACCTCATTTTAACTCAGAGAATGTTCCCGTACATTTTTATCCACATGTCCGTGCACCGGAAGTCACTGGCGGCAAACCAAGACATTTGTTTTTACCCTTTCCTAGAGATTATGGCCTAGGACCTCACGCCGGTGGATTGCACGGCGGTATGCATGGCGATTTTCCTGGCCGATTTGTCGGTGGCTTTGGCGGTGGTTTAGGCGGTGGCTTAGGCGGTGGTTTAGGCGGTGGCTTAGACGGTGGCTTAGGTGGTGGGTTCGGCCACGGATCACATGGCGCCGGAGCAGACGGTTTTGGCGTGGCCGGACTAACTCCATTCCATGATAACGGGATTATTGATCACACAGTCAGTGACATGCATCTGCCGGGGTACGCCCCGTTTGCTCCTATCGCGGATGATCATTTACCTGGACATTTACCAGACCATTTACCGGACCATTTACCGGACCAGGTCCAAGATTATCATGACCACGAACCCGGCAGGGTTGACATTGAAGGCCATGAGATGGGGCGGTTTGTGAAAATGCCAGGATCGCAAATCATGATGCACGCTCCAAAACACGTGTTTGAGCCCGGAAAGGAGCTGACACTTGATAATGGTCATGAATTTCACATGAATAACGTTATGCATGTTGTGCAGCATGGAcatcaccatcgtcatcatcaccatgacgatgatgatgatgatTACGGACACGATGATCATTTTTCGCATGATGATCATTATGATCATGAACACGATTTACACGATAACCACGATATTGAACACGATGATCACGATATAGTGCACGATGATCACGATATTGGGCACGATGACCACGATATTACACACGATGATCACGGTGATCGTCTGGTTATTGCACCTGATGATAATGATCAGTATGACTCACATGGTTCCCCTGTGTCTATTGCTGAACCTGAGAACATTGTGCATGAGCACCATAGTGTTGAACATCATCATCATTGGGTGAAAGCACGTTGTTACCCAAATCCTTGCCGCAATGCTGGTACATGCACTGCCATGGAACATGGATACCAATGCACTTGCTCTATTGGATACAAAGGCTCACATTGCGAAGAAATTAATCAATGTCAGCCTAACCCTTGCAAAAATGGTGGTGACTGTTATGAGACGGGAGAAGGATTCCAGTGCACATGTACAAGAGGCTATAAGGGAGAGTATTGTGAAGTGATCAACAGATGTCATCCTAATCCTTGTAAGAATGATGCGTTTTGTCATGATCTTGAAGATGATTATCGATGTGGATGTCCATCTGGATTCATGGGCAAGAATTGTGAAGGTGTGGACTACTGCACGAACAATCCTTGCAAAAATGGTGGAACATGCATCAATCTGGATGATAAATTCGAATGTATTTGCTCTGAAGCTGCTAAAGGTCTCAGATGTGAAGAATTTGATCACTGCCACAACTCTCCTTGCTTAAATGGAGGTGCTTGTACAAACTCTGCATCTTCCTACACTTGCTCCTGTTTAGATGGATATTCAGGATCCCGTTGTGCAGCCGAGAGTCATTGTCATTCCAACCCTTGTTTGAATGGTGGTCTTTGCACTGAGAGAACTGGCGGCTTTAGTTGTGCATGCTCGGAACACTGGACTGGAGGAACTTGCCAAGGTTAGTACAGACTATCATCATTTCCATGGAAAAAATAGTTTTGACACTCTGCCCTTTTAGGCAACCGTGTTTGGGCATATTGATAAGAAaacatatgtttcaaa

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00008 all species →	EGF	EGF-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR000152 all species →	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR001881 all species →	Domain	EGF-like calcium-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12916 all species →	CYTOCHROME C OXIDASE POLYPEPTIDE VIC-2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06051	DLL; delta	-	Endocrine resistance	ko01522	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.