Gene detail

Detailed information of scaffold3.g31.t1 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold3:373841...400964
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold3.g31.t1

aggcaggcacattattccggtgaataatttgcttacacagtcttttgcgcggagaaatgccttccctgggccgtttgtaaaagaagaaggagaagcgacaatcaattgacgattgtcgatgtttgtaggagctgtttacaattttcaacatcagccggagcatacgattttattcaaagctttggaatgtaatcaccagacaagtgatttcttgtaaatttcctgcagaaacccaactaaattgcagtgaaattttgctcagacttgagcgacatgtctcatttcagtgcttttccatttcatgtgcctaaatgaatacattttgctgggaccccatttaaaattgtaacggtgcactttggatttggatccgtagatcagcttcccgtttacacagttcttggctcttcctatggaaagatttttgtactggagcagtgtaaatgttcttgaaccataaaacttggcagcgaatcaaaactgtgccaatacagtgaaaacgttgtttcagattgacatttgcatgacatttatttataattttatgataattctctggaattctacctttcattcgatacagtcatgtatcatcaggagtaaaacattgcaaataaatagaaaacaacaaaactatgtgttttgacgttatataaaatataaaaatatcacaaatattgcaaatgacgaacgggcgggacttttatattttgcaaacaaaatataaaaaatatcgacgcagaattaattttccatgcgggcggtgctgagaatctattaatttattttatatggcccaatcaataatgaggacaaaaacgtgtgtttcgtgtcaccttctgtttcagagagaccagaatttttttagttttttaatacttttaggaaagtgatttttggccaataaattacttctaagaggtataatgcatccaaaactatgcaaagaaaaaaattagcttgaagcctaattgtaagaaagaattaaatgtttatgaatctgatgcgtggttttggcagtatcatatttcaaaccgtcaatacagttttttgactcacccgatcagatcaacttctacagtcttccaaaggttagattcattgcgcacccggcatgatggcccgttttttagatttctggcaagttagagagttccttacaaattttcgacgcatatatctagactttttatttgcatgcaactgtaatatgtcatatttataaagaagacagggttcggtttagttaaaatacgatttatgattttacaaatgaaattcaaattattatgaaaaattactgagcctcagaaagggtttgaatataaattgccaagatgaaaatgggaacacagcacttcatttagcagccttgaatgggagaagtgaagctgcaatcttacttctacaaaatgatgcatcagcaaacataccagaaaaccttggaaactacccacttcatctggcagctttcaatgggcaccatgaagtcgcagacgttttaattaaccaagggccctccagggcgaatgttctggaacagaacttagctggtgataccgctttgcatattgctgctcagtatggccacacgaaggttgttcaaactctacttgagtgtcattcagatgctcatattcgaaacaaaaaggacgaaacaccgttagatctcgctgcaatgtatggacgattaacaacggttcaagtgttgatatggtctgatcgtagtctggtcaaagacagttgtgaaacccacagtcctttacatttatctgcaagaaatggacatacatctgttattgaggcacttttggactttggaatgttcgttaaccaaatgtgcaaccgtggtactgcccttcatgaagcagcattattcggcaaaatagatgctgtcaagatcttgctgaataagggtaagcttgctttctatgtttgatgcatgtttatcaattttaatgggaacgcacaaaaacggaggttttgaaatcgcttacacaagaacgatacgaaaacagtgttagcgacgatatcagaaaagttcttgaaaaccaccgttttggtgcaaaaggtagtcgaaaaacgacccgtgtttgaagaaaaggggaacaatcgg

Transcript

scaffold3.g31.t1

aggcaggcacattattccggtgaataatttgcttacacagtcttttgcgcggagaaatgccttccctgggccgtttgtaaaagaagaaggagaagcgacaatcaattgacgattgtcgatgtttgtaggagctgtttacaattttcaacatcagccggagcatacgattttattcaaagctttggaatgtaatcaccagacaagtgatttcttgtaaatttcctgcagaaacccaactaaattgcagtgaaattttgctcagacttgagcgacatgtctcatttcagtgcttttccatttcatgtgcctaaatgaatacattttgctgggaccccatttaaaattgtaacggtgcactttggatttggatccgtagatcagcttcccgtttacacagttcttggctcttcctatggaaagatttttgtactggagcagtgtaaatgttcttgaaccataaaacttggcagcgaatcaaaactgtgccaatacagtgaaaacgttgtttcagattgacatttgcatgacatttatttataattttatgataattctctggaattctacctttcattcgatacagtcatgtatcatcaggagtaaaacattgcaaataaatagaaaacaacaaaactatgtgttttgacgttatataaaatataaaaatatcacaaatattgcaaatgacgaacgggcgggacttttatattttgcaaacaaaatataaaaaatatcgacgcagaattaattttccatgcgggcggtgctgagaatctattaatttattttatatggccCAATCAATAATGAGGACAAAAACGTGTGTTTCGTGTCACCTTCTGTTTCAGAGAGACCAGAATTTTTTTAGTTTTTTAATACTTTTAGGAAAGTGATTTTTGGCCAATAAATTACTTCTAAGAGGTATAATGCATCCAAAACTATGCAAAGAAAAAAATTAGCTTGAAGCCTAATTGTAAGAAAGAATTAAATGTTTATGAATCTGATGCGTGGTTTTGGCAGTATCATATTTCAAACCGTCAATACAGTTTTTTGACTCACCCGATCAGATCAACTTCTACAGTCTTCCAAAGGTTAGATTCATTGCGCACCCGGCATGATGGCCCGTTTTTTAGATTTCTGGCAAGTTAGAGAGTTCCTTACAAATTTTCGACGCATATATCTAGACTTTTTATTTGCATGCAACTGTAATATGTCATATTTATAAAGAAGACAGGGTTCGGTTTAGTTAAAATACGATTTATGATTTTACAAATGAAATTCAAATTATTATGAAAAATTACTGAGCCTCAGAAAGGGTTTGAATATAAATTGCCAAGATGAAAATGGGAACACAGCACTTCATTTAGCAGCCTTGAATGGGAGAAGTGAAGCTGCAATCTTACTTCTACAAAATGATGCATCAGCAAACATACCAGAAAACCTTGGAAACTACCCACTTCATCTGGCAGCTTTCAATGGGCACCATGAAGTCGCAGACGTTTTAATTAACCAAGGGCCCTCCAGGGCGAATGTTCTGGAACAGAACTTAGCTGGTGATACCGCTTTGCATATTGCTGCTCAGTATGGCCACACGAAGGTTGTTCAAACTCTACTTGAGTGTCATTCAGATGCTCATATTCGAAACAAAAAGGACGAAACACCGTTAGATCTCGCTGCAATGTATGGACGATTAACAACGGTTCAAGTGTTGATATGGTCTGATCGTAGTCTGGTCAAAGACAGTTGTGAAACCCACAGTCCTTTACATTTATCTGCAAGAAATGGACATACATCTGTTATTGAGGCACTTTTGGACTTTGGAATGTTCGTTAACCAAATGTGCAACCGTGGTACTGCCCTTCATGAAGCAGCATTATTCGGCAAAATAGATGCTGTCAAGATCTTGCTGAATAAGGGTAAGCTTGCTTTCTATGTTTGATGCATGTTTATCAATTTTAATGGGAACGCACAAAAACGGAGGTTTTGAAATCGCTTACACAAGAACGATACGAAAACAGTGTTAGCGACGATATCAGAAAAGTTCTTGAAAACCACCGTTTTGGTGCAAAAGGTAGTCGAAAAACGACCCGTGTTTGAAGAAAAGGGGAACAATCGG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR033635 all species →	Family	Ankyrin repeat and SAM domain-containing protein 1/Caskin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24174 all species →	ANKYRIN REPEAT AND STERILE ALPHA MOTIF DOMAIN-CONTAINING PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold3.g31.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.