Gene detail

Detailed information of scaffold3.g45.t1 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold3:571950...593383
NR annotation: no NCBI-NR hit recorded
Species abbreviation AAURI2 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold3.g45.t1

gttgaaatctcttcgttggcttagcaacgtgccctgaacgggttagaaacggaacagtctgtactgtatttacaaatattttacaaccaatgctagactctatgattttatcttccagatgtcatcaggtataaggtctctacttggcattgcttcagccctcactggaagacaagacacaacagcaatgactcaatcaccacgcttaagtatgtctggaaagtggtcattgacggatgatgaagatcaactaacagaaggttatgatgaagagtttgatccaccagtcacttcaatcatggaatgtcctatttgtctgcttgttttaagagatcccgtccagactgaatgtggccatcgcttttgtaccagatgtatactcaaagtcataagggaaggaagaaaaaaatgcccaattgataatgaagacttggacgaaagccagatatatccagataactttgcaaaacgtgaaatattacagttgacggttcactgcagaaacttcaagactcatgggtgtgaatggcttggcactcttaaagatctgaagacacatctcacaaattgcttatacgaactgatggcctgcagtaatggctgtggtgtgaaagttcttcgaaaagacatggaaaagcatctcaaagaggaatgcgaaaaaagaattgaagcatgtgcttactgcaaagtgaaagttgttcaccgagatatggaggaacattgctcaacatgtccagaatttccaatcttctgcccaaatcaatgcagcgatgaggccatgaaaaggcataagctcgacgaacatctcctctatgaatgcccaaatgcaattgtgaggtgccctttcgaatctttgggatgcaaatttgagggtcaaaggaatgaggtgaataaacatttccaaatgactttagcacaacatatcgctgactttgccggaaaatttgcaacagtttcagaccaggttcaaaaggaaatgttgccagcaaggagcttacaaaaagcttcaccgacacaaatagcacaaaagattgtggaacttgaacaacaggtcagtgaactcacagttgctgttaacgaagcagcagacaaaggaaatcaaggcattcagcttgcagaactatactattcaacacaaaacaacagtctttcctcgctacaagacagtatcagacaactgtctgatcgattcgatgtgcgcgatcagacaattacagagcttcaagctaaaacatggaatgggaacttcgtgtggaaaataacgaattttgacaagttattccagcaagctttgagtggtgaagttcctgctattcacagtatcccgttttacagtggaatccctgttgctgttaacgaagcagcagacaaaggaaatcaaggcattcagcttgcagaactatactattcaacacaaaacaacagtctttcctcgctacaagacagtatcagacaactgtctgatcgattcgatgtacgcgatcagacaattacagagctgcaagctaaaacatggaatggaaacttcgtgtggaaaataacgaattttgacaagttattccagcaggctttgagtggtgaagttcctgctatccacagtatcccgttttacagtggaatccctggttacaaaatgtgtcttcgcgtcaatcttaatggtgttgattctggagcttcaactcatgtctcaatgttcgttcatttgatgcaaggtgattttgactcaattctaccgtggccgtttccaggaaaaataaccctagctgctgtcgatcaaacagaagcagaacaattccacgtcacagaaacactcgtatcaaggccaggattacaagcattcttgaggccgaaaacccccaggaaccataaaggatacggatatgtcgagatgatttcacacacagttttgcgaactcgtgagtacattaaaaacaattcgatgatcgtgcatgtatcaatatcgcttgaaagttagtttgtttagttaatgaggtatcgatttagacattagaacatggacaaactaagagcgagaatgaatgtgtaagtatgcaatagatctgtaaaatatggaagatgaatacgtgattgcgtaggcgtagagttttaccgttttcggactgatgttgaagatgaacatagaaaagcatgggaaattgatgtactgtgaaatagcagcaatatgtacgtatgttactcatgaagcatcagtactgcagtaaatacctgcctataagaacctgcaattttgcaagtaagtctgggttcttgtacaatgaattcaatgtattggttctggttcttataaaatgggtgtataatttgatgatttcagcttgtatgttctaagtccacttgttcttaatccacttgtttcaacttttttcaatccacttgtttcaattccaatttactgtatatggattatttaaaacaatatgtactcttgctccgttttattttcaacaaagatcgcttaagttgttgctattagcgtacctctcagtgtgacatcagaaagccggtacacccgggtaggggggggggggggcacgagacccataaatatgcaggaaggtgctgccggctgccggggtaaagagattcttacccaatgtaagagcaatttttgaaattgaataccgtgtctgggagcaaatgggcaagaaaacaaaactaaacttgcaaattcccaattaaaatcttgtaagagagcaactatttgaaaattttgcaccctttggggagcactggttgagacaatggctagccctttcggaagcaaaatagatgtaaacggtgccctgctcagcggcacatacacggtacaaacatagttaagcggctatgtggagagcagactttaaaccgaatcacggaggcaaggtaattcgagtctccatgatgggctagtttaggagaaaggagttgtacaatacagtcactggctgtttttcacattcttttatcaaccctgtccgatatgcaataacaaagggaattcacgttcttgtagggtacagtagccttaattttcatagtttacagtttattaaagctggttaatcaatgatttatcaatattcctgatttgattgacgcaataaaagcataatgtcaatttatctgtcgctttattacttataaatgcaactgagttttattttgtacgatgtttaggctcaaacccattatcaagtgaagtacgattagtggaacgtagactaaaagaagagtttatttgaatgattgaaatcgtattcaagggaattgttgtgacgtaaatgaaagaataatgggtacataagcatagcaaaaatgaacaggaaaggcaaagaaggcgttggttagaataatgtcattgtaaataattaaaccgctttattactagttgttcgtctggcaaagccatcataaaagaaggttggtagaaaaggcaaccaaatcttcttgtgagaggagacggatatttgccatcggcggcgactgctttggagttcatagggctcaaatctttcaaatctttgaaacggtgggtgtaaaatgctgtgacattttctttgcattgaatggcttgaaatgatcttatggtactttgctgtaaatctgccttggaaattttttgacatcttgattttttcaaaatggcgggaatttaatcatttttgaaaaattcatggaaaatttaaaacaaatttaaatcatcgta

Transcript

scaffold3.g45.t1

gttgaaatctcttcgttggcttagcaacgtgccctgaacgggttagaaacggaacaGTCTGTACTGTATTTACAAATATTTTACAACCAATGCTAGACTCTATGATTTTATCTTCCAGATGTCATCAGGTATAAGGTCTCTACTTGGCATTGCTTCAGCCCTCACTGGAAGACAAGACACAACAGCAATGACTCAATCACCACGCTTAAGTATGTCTGGAAAGTGGTCATTGACGGATGATGAAGATCAACTAACAGAAGGTTATGATGAAGAGTTTGATCCACCAGTCACTTCAATCATGGAATGTCCTATTTGTCTGCTTGTTTTAAGAGATCCCGTCCAGACTGAATGTGGCCATCGCTTTTGTACCAGATGTATACTCAAAGTCATAAGGGAAGGAAGAAAAAAATGCCCAATTGATAATGAAGACTTGGACGAAAGCCAGATATATCCAGATAACTTTGCAAAACGTGAAATATTACAGTTGACGGTTCACTGCAGAAACTTCAAGACTCATGGGTGTGAATGGCTTGGCACTCTTAAAGATCTGAAGACACATCTCACAAATTGCTTATACGAACTGATGGCCTGCAGTAATGGCTGTGGTGTGAAAGTTCTTCGAAAAGACATGGAAAAGCATCTCAAAGAGGAATGCGAAAAAAGAATTGAAGCATGTGCTTACTGCAAAGTGAAAGTTGTTCACCGAGATATGGAGGAACATTGCTCAACATGTCCAGAATTTCCAATCTTCTGCCCAAATCAATGCAGCGATGAGGCCATGAAAAGGCATAAGCTCGACGAACATCTCCTCTATGAATGCCCAAATGCAATTGTGAGGTGCCCTTTCGAATCTTTGGGATGCAAATTTGAGGGTCAAAGGAATGAGGTGAATAAACATTTCCAAATGACTTTAGCACAACATATCGCTGACTTTGCCGGAAAATTTGCAACAGTTTCAGACCAGGTTCAAAAGGAAATGTTGCCAGCAAGGAGCTTACAAAAAGCTTCACCGACACAAATAGCACAAAAGATTGTGGAACTTGAACAACAGGTCAGTGAACTCACAGTTGCTGTTAACGAAGCAGCAGACAAAGGAAATCAAGGCATTCAGCTTGCAGAACTATACTATTCAACACAAAACAACAGTCTTTCCTCGCTACAAGACAGTATCAGACAACTGTCTGATCGATTCGATGTGCGCGATCAGACAATTACAGAGCTTCAAGCTAAAACATGGAATGGGAACTTCGTGTGGAAAATAACGAATTTTGACAAGTTATTCCAGCAAGCTTTGAGTGGTGAAGTTCCTGCTATTCACAGTATCCCGTTTTACAGTGGAATCCCTGTTGCTGTTAACGAAGCAGCAGACAAAGGAAATCAAGGCATTCAGCTTGCAGAACTATACTATTCAACACAAAACAACAGTCTTTCCTCGCTACAAGACAGTATCAGACAACTGTCTGATCGATTCGATGTACGCGATCAGACAATTACAGAGCTGCAAGCTAAAACATGGAATGGAAACTTCGTGTGGAAAATAACGAATTTTGACAAGTTATTCCAGCAGGCTTTGAGTGGTGAAGTTCCTGCTATCCACAGTATCCCGTTTTACAGTGGAATCCCTGGTTACAAAATGTGTCTTCGCGTCAATCTTAATGGTGTTGATTCTGGAGCTTCAACTCATGTCTCAATGTTCGTTCATTTGATGCAAGGTGATTTTGACTCAATTCTACCGTGGCCGTTTCCAGGAAAAATAACCCTAGCTGCTGTCGATCAAACAGAAGCAGAACAATTCCACGTCACAGAAACACTCGTATCAAGGCCAGGATTACAAGCATTCTTGAGGCCGAAAACCCCCAGGAACCATAAAGGATACGGATATGTCGAGATGATTTCACACACAGTTTTGCGAACTCGTGAGTACATTAAAAACAATTCGATGATCGTGCATGTATCAATATCGCTTGAAAGTTAGTTTGTTTAGTTAATGAGGTATCGATTTAGACATTAGAACATGGACAAACTAAGAGCGAGAATGAATGTGTAAGTATGCAATAGATCTGTAAAATATGGAAGATGAATACGTGATTGCGTAGGCGTAGAGTTTTACCGTTTTCGGACTGATGTTGAAGATGAACATAGAAAAGCATGGGAAATTGATGTACTGTGAAATAGCAGCAATATGTACGTATGTTACTCATGAAGCATCAGTACTGCAGTAAATACCTGCCTATAAGAACCTGCAATTTTGCAAGTAAGTCTGGGTTCTTGTACAATGAATTCAATGTATTGGTTCTGGTTCTTATAAAATGGGTGTATAATTTGATGATTTCAGCTTGTATGTTCTAAGTCCACTTGTTCTTAATCCACTTGTTTCAACTTTTTTCAATCCACTTGTTTCAATTCCAATTTACTGTATATGGATTATTTAAAACAATATGTACTCTTGCTCCGTTTTATTTTCAACAAAGATCGCTTAAGTTGTTGCTATTAGCGTACCTCTCAGTGTGACATCAGAAAGCCGGTACACCCGGGTAGGGGGGGGGGGGGGCACGAGACCCATAAATATGCAGGAAGGTGCTGCCGGCTGCCGGGGTAAAGAGATTCTTACCCAATGTAAGAGCAATTTTTGAAATTGAATACCGTGTCTGGGAGCAAATGGGCAAGAAAACAAAACTAAACTTGCAAATTCCCAATTAAAATCTTGTAAGAGAGCAACTATTTGAAAATTTTGCACCCTTTGGGGAGCACTGGTTGAGACAATGGCTAGCCCTTTCGGAAGCAAAATAGATGTAAACGGTGCCCTGCTCAGCGGCACATACACGGTACAAACATAGTTAAGCGGCTATGTGGAGAGCAGACTTTAAACCGAATCACGGAGGCAAGGTAATTCGAGTCTCCATGATGGGCTAGTTTAGGAGAAAGGAGTTGTACAATACAGTCACTGGCTGTTTTTCACATTCTTTTATCAACCCTGTCCGATATGCAATAACAAAGGGAATTCACGTTCTTGTAGGGTACAGTAGCCTTAATTTTCATAGTTTACAGTTTATTAAAGCTGGTTAATCAATGATTTATCAATATTCCTGATTTGATTGACGCAATAAAAGCATAATGTCAATTTATCTGTCGCTTTATTACTTATAAATGCaactgagttttattttgtacgatgtttaggctcaaacccattatcaagtgaagtacgattagtggaacgtagactaaaagaagagtttatttgaatgattgaaatcgtattcaagggaattgttgtgacgtaaatgaaagaataatgggtacataagcatagcaaaaatgaacaggaaaggcaaagaaggcgttggttagaataatgtcattgtaaataattaaaccgctttattaCTAGTTGTTCGTCTGGCAAAGCCATCATAAAAGAAGGTTGGTAGAAAAGGCAACCAAATCTTCTTGTGAGAGGAGACGGATATTTGCCATCGGCGGCGACTGCTTTGGAGTTCatagggctcaaatctttcaaatctttgaaacggtgggtgtaaaatgctgtgacattttctttgcattgaatggcttgaaatgatcttatggtactttgctgtaaatctgccttggaaattttttgacatcttgattttttcaaaatggcgggaatttaatcatttttgaaaaattcatggaaaatttaaaacaaatttaaatcatcgta

Protein

Gene family

Family type	Membership / link
Ubiquitin family	E3\|E3 activity RING\|RING · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 activity RING\|U-box · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02176 all species →	zf-TRAF	TRAF-type zinc finger	Family	Interproscan
PF13923 all species →	zf-C3HC4_2	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan
PF21355 all species →	TRAF-mep_MATH	TRAF/meprin, MATH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001293 all species →	Domain	Zinc finger, TRAF-type	Interproscan
IPR012227 all species →	Family	TNF receptor-associated factor TRAF, metazoa	Interproscan
IPR002083 all species →	Domain	MATH/TRAF domain	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR008974 all species →	Homologous_superfamily	TRAF-like	Interproscan
IPR017907 all species →	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR027139 all species →	Domain	TNF receptor-associated factor 6, C3HC3D-type RING zinc finger	Interproscan
IPR003613 all species →	Domain	U-box domain	Interproscan
IPR049342 all species →	Domain	TRAF1-6/MEP1A/B-like, MATH domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10131 all species →	TNF RECEPTOR ASSOCIATED FACTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0042981 all species →	Biological Process	regulation of apoptotic process	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0031663 all species →	Biological Process	lipopolysaccharide-mediated signaling pathway	Interproscan
GO:0032813 all species →	Molecular Function	tumor necrosis factor receptor superfamily binding	Interproscan
GO:0033209 all species →	Biological Process	tumor necrosis factor-mediated signaling pathway	Interproscan
GO:0045087 all species →	Biological Process	innate immune response	Interproscan
GO:0051092 all species →	Biological Process	positive regulation of NF-kappaB transcription factor activity	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0070534 all species →	Biological Process	protein K63-linked ubiquitination	Interproscan
GO:0004842 all species →	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0005164 all species →	Molecular Function	tumor necrosis factor receptor binding	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03175	TRAF6; TNF receptor-associated factor 6	EC:2.3.2.27	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.