Gene detail

Detailed information of scaffold3.g47.t1 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold3:609799...615133
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold3.g47.t1

gttaaaagctggcccgggccaggtcaaaaatatattctattatactcgaccactttgacgcatccggtctcattgtgtagctgaagaaacaatggatcattggtctgatttcaatgagcttaattgtcgtgtcagtgacaacgttttgcctagagacacttgcattcttcgaagacaaagatagtatccagtttgcatttcttgattatatggaaatcatctgtgttacatggttcactttagagtttgctgcccgacttgttttctctggtgacaaaatcgcattcttcaagagtctgatgaactggattgatttttgtgcaatattcccgtttttcctagagctgatgctacgaaagaataatatgagaacaattgttgttctgagagttgttcgaattactcggttatttcgtatcttcaagctgtcaaggcattcatacggccttcagattttaggccatacactcaaatcgagctgccgagagttgttcctcctcgtcttctttctgtcaatcgctgtcatcatattctccagtttgatttactacgctgaaaaggatctgcaaggcgacaaattcgattcgataccaggctctttttggtggagcgttgttaccatgacgacgattggatacggggatttcgttccgaaaacagctcctggtaaatgcgttggtatcatgtgtgccctctgcggtgtgttagtaattgccttgcctatcccagtcattgtcaacaacttctccctgtattattctcacgcacaagcaaggctgagagtttccaacaagagaaagaagccgatgctgttcggagctgcaaacgcacttcgtatgaccgacccctggatgccgaatcgaatgctacaaaaacaaagatcagagcagtcagattttaccgcaattcattctcctcgccgcacaccgcttgcaagtccaacaccaacccttcgacaattcgctgcgatcagcggagctacaagtgcgtgggtaaagaccaaagatgtcggttcaaggtcgggtttcaaccgtaattcaccctgccctagcatcaattcatctctgaactcacgtacaagcgtcaaaacaccaccaacatccagaagaattagcaacaccctgggagaagatatgatgacatctaagcaatcgagccctacaagaggaccacagacacagctgcctattatccgactatcccccaattacgagagccccagtatcaacgtgagccctcccagcacgcctagcagaagcaacagccagattcaaagctcggttggcacaccctttcctttgtctccctgtgctgaatcgtcctgtttttctcaagacctctacacaccaaaatcaagcacgtgcccatcaagacaagaactgtcaccgctgcaatcacctttatttttgtgcagtcctggcaagtccacgttaagtacttgcctcagtgatctaatgacaacgcctagtactccgtgtagtttaagtagtcaatcctccaagctggcaagtcctcgtggtagaatgggtcgccgtaacggtatttgtattctcggctatcaatctcgtatgcaaactcgaagaaaaatctctacaggaacgagagtgcggaaaacatcaactcgctctttcctggacagcagtgactctcaactttccagcaggcgagattctcgagcaatgagcagctttggtgaaagtcgagatgaaaggagctgtttgatggctccatccccgggtgtcagcaagacgttattcgaagtttcacgacgactggagacgatggttcccgatgatgtgatgccctgtcagtctccaaagccagttacacgatcaagaactgcgagcatttcgaacgaatcaatacgaagcgtgtactcgagtcggtcatcttcgcctcttgttcggcagaaagcgacgaatgccgctctggattcgtcgagctctcaagagaccgagccaccatcagagccccttaacaacactttggacacaagtgatgatgctgtaccgagactagagccagtgatgaatggactgatattcaaacgccgcaataaacaaaagcaagaaatgagtaaaacagcagcaaagggagtcatatcagcatctgtaaatgtatctgcaccaacgtcgatagccaatacgccagggtatgaggatcccttaagtactgcatttagtatcgaaatacaagagccaacttcggatctgagcaaaaatgacatgtcaagctctgttcagttcaatggtatcgatatggcaggtcgatcatctccgaatgtcatgttagctccgcgtcttgatgggctcccacagcccaagtcaaaatcgctagatgacatacgaacaaaccaaaaacatataaagcctactgagatacgaaatgttgtcagtgtctcaaactcacctaaaacgcctggcaatggaaagtttacgctcccgattactcgtcggaaagaggcgttcgtcgagagcaagcaaaacagtaaggaggaggtctggaaagaggagcaacacgatctcgataggccgaccggaaaacgttgcaaatcagcggataatagcgacaaggaaaattcaggagtgtcgaaacatgataataacattttggcatggaaagataatgaaatcgagacaaaaggcgacaggaaagctcaaagggcttcatcatattcgtcctcgaaatcagtagacttaaaagcccagcaacagaatgaagggacaacgccaaataccgtgcgaaggtttggctttgcgacccgaagcccttgggcatcaaagttaggccatgtgcatgattctggtatacaaagcatgtctatgtcacagaaccaggaatcgtgcactctggatcttccgctcgatgaccttgcagagagccccctaagcgaaaaggacgctcctcaagcagtactgagatgccactcggcagaatcctcatttcggaagaaagaaaaataaggcaagctatggtactaagaatacctgtaatttaacgaagtatcctgcggccgttcaaggaaacgtaatgctgccatcatcaatgcgagcccctgcgaggatcgccatgatcaaatcacgtttttagccgtaacaaaggtatcagagtttttataacggagtaataaggtttatagtggtttaggttcttttagttgatatgtcgaagagaagtcttctgtgcttgaaataacattattatcatcatcataattattctatttacgctaggcaagaattaaaagtagctagtttacacctaattaacgcctacgttattacgtatcttcaatttacaatttaagaaaagaactattaaagtttgcaatatatattacaggaaaaagtacaagctaatcgtctatcctgttagaaacctaactttccgggtgtatgttttgcaggtactacaattgcatttattaccattcattttcattttttttttttcattttaaaaatatttatgcacggtagccccgtttgtcagtatgattgattttcagggggccgtgccaaaaactttacaaattaaaaaatctactaaaattaataacgggaaaaggaaactaattacaatcataaataatttatctacaactatttacaataaatttacaacaaaccctttatcttgttcttaaaagaagataaagagggagcttgcttggcctcgcggctgagatcattccagatttttgctccacgaaatgcgaacgctttctgtccattactagttttcatgaatggcactagcaagtcagtttcggcatttctaaggttgataatattgcgatcagaatttctaacaaataaatgcgagagataatcaggcgcgagactattaacagatttatatacagttgttgcagtctcacttctgatcatatccctcacagttggccattttaactctgtaatcaaagcttcggaaggagcatcgtagctgctatttgtaataattctagcggcacgattctgcaatttttgaagcttaaccagtcggaactctgcacagctcccccacacagaacagcagtaccgaaaatgtggctctacaatacctctatataatttgcaaagtacagtttttggcaaaaatttctttgcatattttaaaaaacctaacgagcgggagactttggcttgaacagatttaatttgctcgtcccacacgaggtactggtcaacttggacaccaagatacttaatactgtcgacgagttctacaggggaatcatcgataacgaatgcaggagaatccacagtgttttcaccaatctttttaagatttggtctagatccgattaccattgcctgagtcttgattacattcaaagacaatttattgccctgaagccattctttcaaacatttcaattcgttgttgagcgtttcagttagatcctcaatgctcttagaggaataggatatgctagtatcgtcggcgtacatcgtaactttgcagttttttaaggcgaatggcagatcatttatatagattaggaagagtagcggacctaaacaagagccttgtggaacaccacagttgatgcttccgatgtcagattccactccattaaccttagtgaattgctgcctactgctgagatatgatttgaaccattgaagctcaagaccctgaattccaacacctaatttatttttaaaaatgcaaagggtgtttgcgttttttatttcttgcgataagaactgccacataatgccaaggtaagttgtaatgttatgatgtcttgcgataaaaactgcaccaaaat

Transcript

scaffold3.g47.t1

gttaaaagctggcccgggccaggtcaaaaatatattctattatactcgaccactttgacgcatccggtctcattgtgtagctgaagaaacaatggATCATTGGTCTGATTTCAATGAGCTTAATTGTCGTGTCAGTGACAACGTTTTGCCTAGAGACACTTGCATTCTTCGAAGACAAAGATAGTATCCAGTTTGCATTTCTTGATTATATGGAAATCATCTGTGTTACATGGTTCACTTTAGAGTTTGCTGCCCGACTTGTTTTCTCTGGTGACAAAATCGCATTCTTCAAGAGTCTGATGAACTGGATTGATTTTTGTGCAATATTCCCGTTTTTCCTAGAGCTGATGCTACGAAAGAATAATATGAGAACAATTGTTGTTCTGAGAGTTGTTCGAATTACTCGGTTATTTCGTATCTTCAAGCTGTCAAGGCATTCATACGGCCTTCAGATTTTAGGCCATACACTCAAATCGAGCTGCCGAGAGTTGTTCCTCCTCGTCTTCTTTCTGTCAATCGCTGTCATCATATTCTCCAGTTTGATTTACTACGCTGAAAAGGATCTGCAAGGCGACAAATTCGATTCGATACCAGGCTCTTTTTGGTGGAGCGTTGTTACCATGACGACGATTGGATACGGGGATTTCGTTCCGAAAACAGCTCCTGGTAAATGCGTTGGTATCATGTGTGCCCTCTGCGGTGTGTTAGTAATTGCCTTGCCTATCCCAGTCATTGTCAACAACTTCTCCCTGTATTATTCTCACGCACAAGCAAGGCTGAGAGTTTCCAACAAGAGAAAGAAGCCGATGCTGTTCGGAGCTGCAAACGCACTTCGTATGACCGACCCCTGGATGCCGAATCGAATGCTACAAAAACAAAGATCAGAGCAGTCAGATTTTACCGCAATTCATTCTCCTCGCCGCACACCGCTTGCAAGTCCAACACCAACCCTTCGACAATTCGCTGCGATCAGCGGAGCTACAAGTGCGTGGGTAAAGACCAAAGATGTCGGTTCAAGGTCGGGTTTCAACCGTAATTCACCCTGCCCTAGCATCAATTCATCTCTGAACTCACGTACAAGCGTCAAAACACCACCAACATCCAGAAGAATTAGCAACACCCTGGGAGAAGATATGATGACATCTAAGCAATCGAGCCCTACAAGAGGACCACAGACACAGCTGCCTATTATCCGACTATCCCCCAATTACGAGAGCCCCAGTATCAACGTGAGCCCTCCCAGCACGCCTAGCAGAAGCAACAGCCAGATTCAAAGCTCGGTTGGCACACCCTTTCCTTTGTCTCCCTGTGCTGAATCGTCCTGTTTTTCTCAAGACCTCTACACACCAAAATCAAGCACGTGCCCATCAAGACAAGAACTGTCACCGCTGCAATCACCTTTATTTTTGTGCAGTCCTGGCAAGTCCACGTTAAGTACTTGCCTCAGTGATCTAATGACAACGCCTAGTACTCCGTGTAGTTTAAGTAGTCAATCCTCCAAGCTGGCAAGTCCTCGTGGTAGAATGGGTCGCCGTAACGGTATTTGTATTCTCGGCTATCAATCTCGTATGCAAACTCGAAGAAAAATCTCTACAGGAACGAGAGTGCGGAAAACATCAACTCGCTCTTTCCTGGACAGCAGTGACTCTCAACTTTCCAGCAGGCGAGATTCTCGAGCAATGAGCAGCTTTGGTGAAAGTCGAGATGAAAGGAGCTGTTTGATGGCTCCATCCCCGGGTGTCAGCAAGACGTTATTCGAAGTTTCACGACGACTGGAGACGATGGTTCCCGATGATGTGATGCCCTGTCAGTCTCCAAAGCCAGTTACACGATCAAGAACTGCGAGCATTTCGAACGAATCAATACGAAGCGTGTACTCGAGTCGGTCATCTTCGCCTCTTGTTCGGCAGAAAGCGACGAATGCCGCTCTGGATTCGTCGAGCTCTCAAGAGACCGAGCCACCATCAGAGCCCCTTAACAACACTTTGGACACAAGTGATGATGCTGTACCGAGACTAGAGCCAGTGATGAATGGACTGATATTCAAACGCCGCAATAAACAAAAGCAAGAAATGAGTAAAACAGCAGCAAAGGGAGTCATATCAGCATCTGTAAATGTATCTGCACCAACGTCGATAGCCAATACGCCAGGGTATGAGGATCCCTTAAGTACTGCATTTAGTATCGAAATACAAGAGCCAACTTCGGATCTGAGCAAAAATGACATGTCAAGCTCTGTTCAGTTCAATGGTATCGATATGGCAGGTCGATCATCTCCGAATGTCATGTTAGCTCCGCGTCTTGATGGGCTCCCACAGCCCAAGTCAAAATCGCTAGATGACATACGAACAAACCAAAAACATATAAAGCCTACTGAGATACGAAATGTTGTCAGTGTCTCAAACTCACCTAAAACGCCTGGCAATGGAAAGTTTACGCTCCCGATTACTCGTCGGAAAGAGGCGTTCGTCGAGAGCAAGCAAAACAGTAAGGAGGAGGTCTGGAAAGAGGAGCAACACGATCTCGATAGGCCGACCGGAAAACGTTGCAAATCAGCGGATAATAGCGACAAGGAAAATTCAGGAGTGTCGAAACATGATAATAACATTTTGGCATGGAAAGATAATGAAATCGAGACAAAAGGCGACAGGAAAGCTCAAAGGGCTTCATCATATTCGTCCTCGAAATCAGTAGACTTAAAAGCCCAGCAACAGAATGAAGGGACAACGCCAAATACCGTGCGAAGGTTTGGCTTTGCGACCCGAAGCCCTTGGGCATCAAAGTTAGGCCATGTGCATGATTCTGGTATACAAAGCATGTCTATGTCACAGAACCAGGAATCGTGCACTCTGGATCTTCCGCTCGATGACCTTGCAGAGAGCCCCCTAAGCGAAAAGGACGCTCCTCAAGCAGTACTGAGATGCCACTCGGCAGAATCCTCATTTCGGAAGAAAGAAAAATAAGGCAAGCTATGGTACTAAGAATACCTGTAATTTAACGAAGTATCCTGCGGCCGTTCAAGGAAACGTAATGCTGCCATCATCAATGCGAGCCCCTGCGAGGATCGCCATGATCAAATCACGTTTTTAGCCGTAACAAAGGTATCAGAGTTTTTATAACGGAGTAATAAGGTTTATAGTGGTTTAGGTTCTTTTAGTTGATATGTCGAAGAGAAGTCTTCTGTGCTTGAAATAACATTATTATCATCATCATAATTATTCTATTTACGCTAGGCAAGAATTAAAAGTAGCTAGTTTACACCTAATTAACGCCTACGTTATTACGTATCTTCAATTTACAATTTAAGAAAAGAACTATTAAAGTTTGCAATATATATTACAGGAAAAAGTACAAGCTAATCGTCTATCCTGTTAGAAACCTAACTTTCCGGGTGTATGTTTTGCAGGTACTACAATTGCATTTATTACCATTCAttttcattttttttttttcattttaaaaatatttatgcacggtagccccgtttgtcagtatgattgattttcagggggccgtgccaaaaactttacaaattaaaaaatctactaaaattaataacgggaaaaggaaactaattacaatcataaataatttatctacaactatttacaataaatttacaacaaaccctttatcttgttcttaaaagaagataaagagggagcttgcttggcctcgcggctgagatcattccagatttttgctccacgaaatgcgaacgctttctgtccattactagttttcatgaatggcactagcaagtcagtttcggcatttctaaggttgataatattgcgatcagaatttctaacaaataaatgcgagagataatcaggcgcgagactattaacagatttatatacagttgttgcagtctcacttctgatcatatccctcacagttggccattttaactctgtaatcaaagcttcggaaggagcatcgtagctgctatttgtaataattctagcggcacgattctgcaatttttgaagcttaaccagtcggaactctgcacagctcccccacacagaacagcagtaccgaaaatgtggctctacaatacctctatataatttgcaaagtacagtttttggcaaaaatttctttgcatattttaaaaaacctaacgagcgggagactttggcttgaacagatttaatttgctcgtcccacacgaggtactggtcaacttggacaccaagatacttaatactgtcgacgagttctacaggggaatcatcgataacgaatgcaggagaatccacagtgttttcaccaatctttttaagatttggtctagatccgattaccattgcctgagtcttgattacattcaaagacaatttattgccctgaagccattctttcaaacatttcaattcgttgttgagcgtttcagttagatcctcaatgctcttagaggaataggatatgctagtatcgtcggcgtacatcgtaactttgcagttttttaaggcgaatggcagatcatttatatagattaggaagagtagcggacctaaacaagagccttgtggaacaccacagttgatgcttccgatgtcagattccactccattaaccttagtgaattgctgcctactgctgagatatgatttgaaccattgaagctcaagaccctgaattccaacaccTAATTTATTTTTAAAAATGCAAAGGGTGTTTGCGTTTTTTATTTCTTGCGATAAGAACTGCCACATAATGCCAAGGTAAGTTGTAATGTTATGATGTCTTGCGATAAAAACTGCACCAAAAT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00520 all species →	Ion_trans	Ion transport protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027359 all species →	Homologous_superfamily	Voltage-dependent channel domain superfamily	Interproscan
IPR005821 all species →	Domain	Ion transport domain	Interproscan
IPR003968 all species →	Family	Potassium channel, voltage dependent, Kv	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11537 all species →	VOLTAGE-GATED POTASSIUM CHANNEL	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005216 all species →	Molecular Function	monoatomic ion channel activity	Interproscan
GO:0006811 all species →	Biological Process	monoatomic ion transport	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0005249 all species →	Molecular Function	voltage-gated potassium channel activity	Interproscan
GO:0005251 all species →	Molecular Function	delayed rectifier potassium channel activity	Interproscan
GO:0008076 all species →	Cellular Component	voltage-gated potassium channel complex	Interproscan
GO:0016021 all species →	Cellular Component	membrane	Interproscan
GO:0071805 all species →	Biological Process	potassium ion transmembrane transport	Interproscan
GO:0006813 all species →	Biological Process	potassium ion transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold3.g47.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.