Gene detail

Detailed information of scaffold3.g7.t2 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold3:74219...101094
NR annotation: no NCBI-NR hit recorded
Species abbreviation AAURI2 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold3.g7.t2

atcgttgcaggaatatttgctttttttttcatgtactttagatatcagtgaaatatgcttctgtttacattttagagatcagacctacttaaatcattatcagaatatcaaataactgagaaggagcttgcattataccaaccaatttcaagaattgggcaatcaagattagagggtaaaagaaaagccattgatttgaattcaaaagatctcttgaacgatgtgacaaaggatgttgtttccagtggaagaaagagagcaaagaaattaagaatgatgaagaaattagaaaaactttcagaaacaaatgttgttgctgcagaggaagaccaaagtagtagttcagagagcgagagtgattctgacattgagaaagatgtagaaataaaaaaagagtctcatttgtcatctattaaagaaaatgattcttcttcaaactttgatgttgattctaatgagcatgttaccaacaccacagaaattgttcaaccttgtagccagaaagaatgcaaagaaattgctattcaagccactaatgaaaaagtgctaaatccaaagcaaataaagaaattaattccacccaagaagtcatcagtttcaaagccagctgtttttgttgaagtaatgagaagaccagaaatccaggctgccagagttctgcttccaatattagctgaagaacaatcaataatggaaacaatttcagaaaataatgttgtcctaatttgtggtgaaactggaagtggaaaaacgactcaagttcctcaattcctttatgaagctggatatgcaacacacagtccgcatgaaggaattattggtatcacagagccaaggagagttgcagcaataagcatgtcaaaacgagttgctgaggaaatgaatctagacacaagcattgtttcttatcagatcagatatgaaggaaatgccacaaattcaacaagaatgaaatttatgactgatggagttttgctaaaagaaatggaaacagatttcttgctgacaaaatattcagtgataataattgatgaagcacatgaaagaagtgtatttaccgatattctcattggtcttctctccagagttgtgcctcttagaaataaggaagggaatccaatgaaattgatcatcatgtcagctacacttagaattgaagattttgttgataataaaagattatttccgtcacctccgcctgttttgaaggtcgactcaaggcaatacccagtcacaattcacttcaacaagagaaccccagacgattacgtcacagaggcttttaaaaaggtttgcaaaatacatcgcactttaaaatctggtggaattttagtatttgtcactggtcagaatgaggttcaagtattgtgccggaaattacgtaggacgttttcatcaaaagatggcggcagaaacaagcctgttaacgtcaatgaaactgagaaagagaagaagagaaatgagaacgatggcaaactgacacctagctttaatctggacaattatccaactgtatcaaagaatggaattgattatgatgatgattttgatcatgatgattattatggcgcagatgaagaatcattccttagcaatgaagaagatgacatggcatatgatcaattaattgattcacaattgcctcttcacgtgctaccactttattcgttactctcaagtgcaaaacaagccaaggtattcgaaccagttccagatggtacaagattgtgtgttattgctacaaatgtagccgaaacatctctcacgattcctggcattaaatacgtcattgactctggaaaagttaaaacaagattttatgacaagctcaccggtgtttcatcgtttcgagtaacatggacgtcaaaagcatcagccaatcaaagggctggacgtgctggtcgtgtagaacctggccattgttatcggttatattcatcggcagtgttccaacatgatttcgtcgacttctcagaagctgaaatttgccgacgccctgcagatgagcttttacttctgatgaagaacatgggaattgagaaagtgaaaaattttccatttccaaccccaccagattcaactgcacttcaggctgctgaaaatcatttattggatctggatgctttagaaaagaagaaaataaagaaaggaggtttcaatacagcagtgaccttacttggtagaacaatgggacaacttccggtatcaccaagatattcaaaaatgattttattggcgcatcagcaaaactgtattcaatacatgattattattgttgctgctttaaccgtcaaggaaatatttacagatgacatcaagattgacgatgactcaatcacaaaagatgaagatggaatgaaaaagaaaagaatgatgataacacaagcaagaaggaaatgggctggcactggtgaaacgtcgatgctaggggatatgatggtaatccttcgcgcatttggtgcttgtgaatatgcaggatatagtgaacaattctgcagagaaaatggattgagatataaagccatgattgaaataagaaaactcagagctcaactgtctaaagcagtgaattcagtgaacagcaaagttgatatttttgtagaaccaaagatcaccccaccaactgaaacgcaggccaaagttattcgtcagattcttttatcatgtcttggtgatcgagttgcgaggaaaataccacaatccgaaataaaagatgctgcaatgaaaaatgcttatcaaagttgttcaaccgcagacccagtttttattcaccctgtgtcttcattatttcatgctcttcctgagtacatagtttatcaagaaatcatcgagacttctaaactgtacatgaggggaataactgcaattgaggaagactggttggcactttttgcaccttataaatgcacgttctcaaaacctctggatacgatcaagcctcgttatgatgttgagtctggtaaaatgaagtgtcacatgacatgtacttttggtcctcattgctggagtttgcctgctcaagaacttgattttccacattgtatcgatcgattcaaatggtttgcaatgtcatttctagaaggaaatgtttgcgaagcattgcgagaatttgttccttatttgctgacaccagcctctgttatgataaagacttgggcaaaattacaacctcgaactgaagttctcctgaaagaatttttgagtgaaaatgtttcagaaaggaaaagcttggttcaaatgtggaaaaaggatgaaaaatatttattaactgcgtacttgcaatggacaccagagagtcttcacgaacagattcgcagtaaatggccgcggatagcttgataaaggaaaaatcggccagaaaagcggtcttgagaccaactgtgcccagcaatgaattaacagtaccgaggacaactgaatacatcttggaggacctcaaatagaccgaaaaggaagaggagatggtgggaaagactgaagtgaaaagcccatcgagaagaaccatggtcaatggaagaacttgatggtcaatggaagaaattgtgcaaatgttggccagcaaaatatttggaaggagagcgattcaaaagtgactttgtgtgtgactgcaaactgtatattgaacaggcagtgaagaatggtcgaagaatgttattggacaattcgaaacaaaggaaacaacccaacacttttatgatgatcagcaatcgccggtaaatcatcagaatcaaaattgacaatcacacatcaatcataacgatcattagcactaaattcaagtgcatccttttgtaagcaatgaatcttaatctatcgactgtagaaatttgatagatcaactgattgaaacttgttttctggggttgtattttttaagtttgttgatcaataggcgagataagatttgattcttttttcacgcccattcctcaaggcagacatttgaaccatctttacagttaaacagaaatcttatttcatacgcgaacttgagatgaatttttccagctttagctgcatcttatccatgcttatcccggatgaaaatcaaattaaagtacaaaataataaaaacaggtagggaacaccttttaactgagctttttattatctaaattccaggttccgaatcctcttgataagacggataagactaagcaccctcgacacgtggaaaagaatgctccaggtattcggaaggccttaatacgatcattttgtattcctatggatcatgcttactgcaattcctcgaatgagccctcagggatttttttcgcaagaaagtattttgggtaagggcttattcgaggggagggggcttactcgaagggagggaattattcgaggaataacgatagattcttacaaacaaaattaacgtgggtctcgacgtgggtcattgttttgttattgtttagcacgttaaatggataatatttgaaccagcagttagccatgcattctccatactttgagattcaacctgctttgtttgtatgctatttcataggtatgctctattcattgcacaatgtgcaacctgctcatttcagtttttgcagttatgctaagccatatcaactaatgatttagaaaatgatctttttttagattagagtaatttaaagagccattgtcactcaaagtcctttgcgagcttgctgcaatttgttgagactgtctgaaatcagttctggcctagcgaaactgctagatccacagtacagtagttgaaatgatagaacaaaacaactaaagtaaa

Transcript

scaffold3.g7.t2

ATCGTTGCAGGAATATTTGCTTTTTTTTTCATGTACTTTAGATATCAGTGAAATATGCTTCTGTTTACATTTTAGAGATCAGACCTACTTAAATCATTATCAGAATATCAAATAACTGAGAAGGAGCTTGCATTATACCAACCAATTTCAAGAATTGGGCAATCAAGATTAGAGGGTAAAAGAAAAGCCATTGATTTGAATTCAAAAGATCTCTTGAACGATGTGACAAAGGATGTTGTTTCCAGTGGaagaaagagagcaaagaaattaagaatgatgaagaaaTTAGAAAAACTTTCAGAAACAAATGTTGTTGCTGCAGAGGAAGACCAAAGTAGTAGTTCAGAGAGCGAGAGTGATTCTGACATTGAGAAAGATGTAGAAATAAAAAAAGAGTCTCATTTGTCATCTATTAAAGAAAATGATTCTTCTTCAAACTTTGATGTTGATTCTAATGAGCATGTTACCAACACCACAGAAATTGTTCAACCTTGTAGCCAGAAAGAATGCAAAGAAATTGCTATTCAAGCCACTAATGAAAAAGTGCTAAATCCAAAGCAAATAAAGAAATTAATTCCACCCAAGAAGTCATCAGTTTCAAAGCCAGCTGTTTTTGTTGAAGTAATGAGAAGACCAGAAATCCAGGCTGCCAGAGTTCTGCTTCCAATATTAGCTGAAGAACAATCAATAATGGAAACAATTTCAGAAAATAATGTTGTCCTAATTTGTGGTGAAACTGGAAGTGGAAAAACGACTCAAGTTCCTCAATTCCTTTATGAAGCTGGATATGCAACACACAGTCCGCATGAAGGAATTATTGGTATCACAGAGCCAAGGAGAGTTGCAGCAATAAGCATGTCAAAACGAGTTGCTGAGGAAATGAATCTAGACACAAGCATTGTTTCTTATCAGATCAGATATGAAGGAAATGCCACAAATTCAACAAGAATGAAATTTATGACTGATGGAGTTTTGCTAAAAGAAATGGAAACAGATTTCTTGCTGACAAAATATTCAGTGATAATAATTGATGAAGCACATGAAAGAAGTGTATTTACCGATATTCTCATTGGTCTTCTCTCCAGAGTTGTGCCTCTTAGAAATAAGGAAGGGAATCCAATGAAATTGATCATCATGTCAGCTACACTTAGAATTGAAGATTTTGTTGATAATAAAAGATTATTTCCGTCACCTCCGCCTGTTTTGAAGGTCGACTCAAGGCAATACCCAGTCACAATTCACTTCAACAAGAGAACCCCAGACGATTACGTCACAGAGGCTTTTAAAAAGGTTTGCAAAATACATCGCACTTTAAAATCTGGTGGAATTTTAGTATTTGTCACTGGTCAGAATGAGGTTCAAGTATTGTGCCGGAAATTACGTAGGACGTTTTCATCAAAAGATGGCGGCAGAAACAAGCCTGTTAACGTCaatgaaactgagaaagagaagaagagaaatgagaaCGATGGCAAACTGACACCTAGCTTTAATCTGGACAATTATCCAACTGTATCAAAGAATGGAATtgattatgatgatgattttgatcatgatgattattatggcgcagatgaagaATCATTCCTTAGCAATGAAGAAGATGACATGGCATATGATCAATTAATTGATTCACAATTGCCTCTTCACGTGCTACCACTTTATTCGTTACTCTCAAGTGCAAAACAAGCCAAGGTATTCGAACCAGTTCCAGATGGTACAAGATTGTGTGTTATTGCTACAAATGTAGCCGAAACATCTCTCACGATTCCTGGCATTAAATACGTCATTGACTCTGGAAAAGTTAAAACAAGATTTTATGACAAGCTCACCGGTGTTTCATCGTTTCGAGTAACATGGACGTCAAAAGCATCAGCCAATCAAAGGGCTGGACGTGCTGGTCGTGTAGAACCTGGCCATTGTTATCGGTTATATTCATCGGCAGTGTTCCAACATGATTTCGTCGACTTCTCAGAAGCTGAAATTTGCCGACGCCCTGCAGATGAGCTTTTACTTCTGATGAAGAACATGGGAATTGAGAAAGTGAAAAATTTTCCATTTCCAACCCCACCAGATTCAACTGCACTTCAGGCTGCTGAAAATCATTTATTGGATCTGGATGCTTTAGAAAAGAAGAAAATAAAGAAAGGAGGTTTCAATACAGCAGTGACCTTACTTGGTAGAACAATGGGACAACTTCCGGTATCACCAAGATATTCAAAAATGATTTTATTGGCGCATCAGCAAAACTGTATTCAATACATGATTATTATTGTTGCTGCTTTAACCGTCAAGGAAATATTTACAGATGACATCAAGATTGACGATGACTCAATCACAAAAGATGAAGATGGAATGAAAAAGAAAAGAATGATGATAACACAAGCAAGAAGGAAATGGGCTGGCACTGGTGAAACGTCGATGCTAGGGGATATGATGGTAATCCTTCGCGCATTTGGTGCTTGTGAATATGCAGGATATAGTGAACAATTCTGCAGAGAAAATGGATTGAGATATAAAGCCATGATTGAAATAAGAAAACTCAGAGCTCAACTGTCTAAAGCAGTGAATTCAGTGAACAGCAAAGTTGATATTTTTGTAGAACCAAAGATCACCCCACCAACTGAAACGCAGGCCAAAGTTATTCGTCAGATTCTTTTATCATGTCTTGGTGATCGAGTTGCGAGGAAAATACCACAATCCGAAATAAAAGATGCTGCAATGAAAAATGCTTATCAAAGTTGTTCAACCGCAGACCCAGTTTTTATTCACCCTGTGTCTTCATTATTTCATGCTCTTCCTGAGTACATAGTTTATCAAGAAATCATCGAGACTTCTAAACTGTACATGAGGGGAATAACTGCAATTGAGGAAGACTGGTTGGCACTTTTTGCACCTTATAAATGCACGTTCTCAAAACCTCTGGATACGATCAAGCCTCGTTATGATGTTGAGTCTGGTAAAATGAAGTGTCACATGACATGTACTTTTGGTCCTCATTGCTGGAGTTTGCCTGCTCAAGAACTTGATTTTCCACATTGTATCGATCGATTCAAATGGTTTGCAATGTCATTTCTAGAAGGAAATGTTTGCGAAGCATTGCGAGAATTTGTTCCTTATTTGCTGACACCAGCCTCTGTTATGATAAAGACTTGGGCAAAATTACAACCTCGAACTGAAGTTCTCCTGAAAGAATTTTTGAGTGAAAATGTTTCAGAAAGGAAAAGCTTGGTTCAAATGTGGAAAAAGGATGAAAAATATTTATTAACTGCGTACTTGCAATGGACACCAGAGAGTCTTCACGAACAGATTCGCAGTAAATGGCCGCGGATAGCTTGATAAAGGAAAAATCGGCCAGAAAAGCGGTCTTGAGACCAACTGTGCCCAGCAATGAATTAACAGTACCGAGGACAACTGAATACATCTTGGAGGACCTCAAATAGACCGAAAAGGAAGAGGAGATGGTGGGAAAGACTGAAGTGAAAAGCCCATCGAGAAGAACCATGGTCAATGGAAGAACTTGATGGTCAATGGAAGAAATTGTGCAAATGTTGGCCAGCAAAATATTTGGAAGGAGAGCGATTCAAAAGTGACTTTGTGTGTGACTGCAAACTGTATATTGAACAGGCAGTGAAGAATGGTCGAAGAATGTTATTGGACAATTCGAAACAAAGGAAACAACCCAACACTTTTATGATGATCAGCAATCGCCGGTAAATCATCAGAATCAAAATTGACAATCACACATCAATCATAACGATCATTAGCACTAAATTCAAGTGCATCCTTTTGTAAGCAATGAATCTTAATCTATCGACTGTAGAAATTTGATAGATCAACTGATTGAAACTTGTTTTCTGGGGTTGTATTTTTTAAGTTTGTTGATCAATAGGCGAGATAAGATTTGATTCTTTTTTCACGCCCATTCCTCAAGGCAGACATTTGAACCATCTTTACAGTTAAACAGAAATCTTATTTCATACGCGAACTTGAGATGAATTTTTCCAGCTTTAGCTGCATCTTATCCATGCTTATCCCGGATGAAAATCAAATTAAAGTACAAAATAATAAAAACAGGTAGGGAACACCTTTTAACTGAGCTTTTTATTATCTAAATTCCAGGTTCCGAATCCTCTTGATAAGACGGATAAGACTAAGCACCCTCGACACGTGGAAAAGAATGCTCCAGGTATTCGGAAGGCCTTAATACGATCATTTTGTATTCCTATGGATCATGCTTACTGCAATTCCTCGAATGAGCCCTCAGGGATTTTTTTCGCAAGAAAGTATTTTGGGTAAGGGCTTATTCGAGGGGAGGGGGCTTACTCGAAGGGAGGGAATTATTCGAGGAATAACGATAGATTCTTACAAACAAAATTAACGTGGGTCTCGACGTGGGTCATTGTTTTGTTATTGTTTAGCACGTTAAATGGATAATATTTGAACCAGCAGTTAGCCATGCATTCTCCATACTTTGAGATTCAACCTGCTTTGTTTGTATGCTATTTCATAGGTATGCTCTATTCATTGCACAATGTGCAACCTGCTCATTTCAGTTTTTGCAGTTATGCTAAGCCATATCAACTAATGATTTAGAAAATGATCTTTTTTTAGATTAGAGTAATTTAAAGAGCCATTGTCACTCAAAGTCCTTTGCGAGCTTGCTGCAATTTGTTGAGACTGTCTGAAATCAGTTCTGGCCTAGCGAAACTGCTAGATCCACAGTACAGTAGTTGAAATGATAGAACAAAACAACTAAAGTAAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF21010 all species →	HA2_C	Helicase associated domain (HA2), ratchet-like	Domain	Interproscan
PF07717 all species →	OB_NTP_bind	Oligonucleotide/oligosaccharide-binding (OB)-fold	Domain	Interproscan
PF00270 all species →	DEAD	DEAD/DEAH box helicase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR007502 all species →	Domain	Helicase-associated domain	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR011709 all species →	Domain	DEAD-box helicase, OB fold	Interproscan
IPR002464 all species →	Conserved_site	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	Interproscan
IPR011545 all species →	Domain	DEAD/DEAH box helicase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18934 all species →	ATP-DEPENDENT RNA HELICASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0000462 all species →	Biological Process	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0004386 all species →	Molecular Function	helicase activity	Interproscan
GO:0005622 all species →	Cellular Component	intracellular anatomical structure	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14780	DHX37, DHR1; ATP-dependent RNA helicase DHX37/DHR1	EC:5.6.2.6	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.