Detailed information of scaffold307.g15.t1 in Morbakka virulenta

Genomic Location: scaffold307:376696...433056
NR annotation: XP_002160444.2, exosome complex component RRP45 [Hydra vulgaris]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q5XJQ5Exosome complex component RRP45 OS=Danio rerio OX=7955 GN=exosc9 PE=2 SV=1
Q3SWZ4Exosome complex component RRP45 OS=Bos taurus OX=9913 GN=EXOSC9 PE=2 SV=1
Q4QR75Exosome complex component RRP45 OS=Rattus norvegicus OX=10116 GN=Exosc9 PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01138RNase_PH3' exoribonuclease family, domain 1DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR020568Homologous_superfamilyRibosomal protein uS5 domain 2-type superfamilyInterproscan
IPR050590FamilyExosome complex component Rrp42 subfamilyInterproscan
IPR001247DomainExoribonuclease, phosphorolytic domain 1Interproscan
IPR027408Homologous_superfamilyPNPase/RNase PH domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11097EXOSOME COMPLEX EXONUCLEASE RIBOSOMAL RNA PROCESSING PROTEINInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0000176Cellular Componentnuclear exosome (RNase complex)Interproscan
GO:0000177Cellular Componentcytoplasmic exosome (RNase complex)Interproscan
GO:0000467Biological Processexonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)Interproscan
GO:0016075Biological ProcessrRNA catabolic processInterproscan
GO:0017091Molecular FunctionmRNA 3'-UTR AU-rich region bindingInterproscan
GO:0034427Biological Processobsolete nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'Interproscan
GO:0034473Biological ProcessU1 snRNA 3'-end processingInterproscan
GO:0034475Biological ProcessU4 snRNA 3'-end processingInterproscan
GO:0034476Biological ProcessU5 snRNA 3'-end processingInterproscan
GO:0043928Biological Processobsolete exonucleolytic catabolism of deadenylated mRNAInterproscan
GO:0071028Biological Processnuclear mRNA surveillanceInterproscan
GO:0071035Biological Processnuclear polyadenylation-dependent rRNA catabolic processInterproscan
GO:0071038Biological ProcessTRAMP-dependent tRNA surveillance pathwayInterproscan
GO:0071042Biological Processnuclear polyadenylation-dependent mRNA catabolic processInterproscan

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