Gene detail

Detailed information of scaffold308.g2.t1 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold308:26624...34424
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold308.g2.t1

ggtgacccgaaaagcagcacgtacacaaatatttatgaatgttcacttgtgaacacgcaagcattcaaaatgaatttgatcacatgatggctcaaagtgttcgaggcttccacgtggaaacgaggagaacttccatattaggcaaggtcataggcctttcgtgcaataaattttggcgcggtacaattgacgatgggaaacaagaacattcctgagtgaaggaagagcaacgtggcagagaaaaagtggcccatataaacaaacaagtgaaatacacacatcaccaatcaacatggctgtgaatacttatagtggcttgaaccagaatgttctgtcaaaatacatggaccttgacaccggtggaagagtgatggctcaatatgtttggatcgatggtagcggacagcatctcagatgcaaaacgcggacacttgactttgaaccagttgatccaaaagacgtccccgtttggaattttgacggctcctcgaccggacaagcaactggcagtaacagcgacacatatctgcacccagttgcaatttttagagaccctttcagaggtggaaagaataaaatagttctgtgtgagacttataaatacgaccacaagccatgcgagaccaatcgaagaaaaacatgcaatcaagcgatgcagaaagtcaaggaaaatcatccatggtttggcattgaacaggaatacacattgcttgatcaagatgggcatcctcttggttggcccaaaggtggatacccagcaccacagggaccttactattgtgcagttgggactggcagagtctttggaagggaagttgttgaagcccattacagagcatgtctttatactggtatcaaaattgctggagaaaacgcagaagtaatgcctgcccagtgggaatttcaagttggaccttgtgaaggaattgagatgggtgaccacttatgggtagcaagattcttgcttgagcgtgttgcagaagattttggcatccttgtgacctttgatcctaagccaatgccaggagattggaatggtgctggtgctcattgtaactacagcactgaagcaatgcgtgaagagggtggtatcaagtatatgtacgaagctgtggaaaagctttcaaaacgtcatgattatcacattgagatgtacgatccaaataagggagatgacaacaaaagaagactgacaggccgacatgaaacatcagacatttacaccttctcatctggggttgcacacaggggagcaagtattagaataccgcgccaatgtgccgaagatggaaaaggttaccttgaagaccgaaggccatcatccaattgcgatccatattctgtcactgaagcaattgtcaggacaactatccttgatgaaactgattagattttggaagtggggaaagacaagggacttgtataacttatgcatatcatttagtggaagggggaaagtagattataggtttgtaagtgttatgtatttgtttctttcatcttgttatatttatatctggtaaaacatttatgcttccttaatgtaattactaaaattatatacttatgaagaaggtggatgcaaagaaacaaaccagagttctgccacacaaatgcaaagtcacactttgatgataacagaagaggtgtgaaaggcctcaatgtgccagaaatctgtctgtttctttgcatccgtcttctttaaagtatatcatttttaaatttttggtaaatatatgctggaaacttattcacaattttgcatttatatacaattagaacttgaagcctttgatgaacaaatcaggggtattcatgtgcactaagctataaaagcaatatcatcctaaactggcattaacttgtaaactctcagagttccaaaaatacaagttcccattatagggtacaattgatgtcacgtttctagtcattctatcttttaatggactttctggaaaaaaacgtaagaaaggatacatccacaaaggccttttaggtactgaagatttttttggttgaagtaatactttgaagtcagatatatgcagaaacaaactatacgttcaattttaacagatctgtttcagttggaaatttatacatatgaatcattgtatgcatgcataaagctgatatatttcatcgtttgtaagaggtgtattttaaaatctatttacaatgaaggacctgagttaggacctgattacatggagttttcaaccccagggttgaatttcaacccacctggccgagttgaaatttcatcccacctctccattgattcctttattgattccaattttcgattacatggtgaaatctcaaccccggggatgaaataacacccggggctgaaatctcatcccaccttgagctagccgaggtgagacttttgagccgttaatccccattgttttcattacgtgaatgtccatgtaatcgcaatcttgtttcaaccccggggtcgaattgctattgacgcatgcaagttgtattgcgcatggcgagctttttcatacccggggatgaaattttacggctcgctttttcatacccgggagtgaaaatacccatgtaatagcaaatttatttcaactcaggcaggtgggttgaaactcaaccccggggttgaaaactctcatgtaatcgggcccttaaaagatgaaatcttgcaggcctatatatggcctattgtatttgataatcgtggcacgttgccaaacaaagcaagccaacgaaacaatggcctgtgtaggcatttctttgtcctagttataaaccacgtcatttagctcaggttattcagtttgatatcgaatggaaggtgctaacctggtgaaaccatgcactatgatcctttgtaaaatatgaccgtttgttcggcaacaagaccatatcatatggaaaatcctgcaccttatagctaatatcttgctaatagtggtcgaactgaggacagtcttatttatttaaaaggttgctttcaataacactaatttatcatttgaaggtgctttttcgtgtgtctaaatctttctagtttctattaaacaatcatatttatgtattacatattgtagaatttccgttggtatcaaaactttttattttaaccgtgattattttactctaactatatgctgaacgagtatcgtatactgtgctttagtttatttagaatatttataacaatcgatgttgatgatgataccgactattctgcaaatttctgatttctcctgttttgctcctatttgcatgcgatgactggactttgttgcgaactaatttgtttcaaaaatagccttaaataacgtactcatcatattaaacccataaacgcaataaaaacaccgaaatcagtagaaagaagactattaactcctgtaaaagaaacaataaccaaaataagcctgtaacaagagaaaaactgttaaatcctgtaagacaaaaccgaattaaccttaaaacctgaa

Transcript

scaffold308.g2.t1

GGTGACCCGAAAAGCAGCACGTACACAAATATTTATGAATGTTCACTTGTGAACACGCAAGCATTCAAAATGAATTTGATCACATGATGGCTCAAAGTGTTCGAGGCTTCCACGTGGAAACGAGGAGAACTTCCATATTAGGCAAGGTCATAGGCCTTTCGTGCAATAAATTTTGGCGCGGTACAATTGACGATGGGAAACAAGAACATTCCTGAGTGAAGGAAGAGCAACGTGGCAGAGAAAAAGTGGCCCATATAAACAAACAAGTGAAATACACACATCACCAATCAACATGGCTGTGAATACTTATAGTGGCTTGAACCAGAATGTTCTGTCAAAATACATGGACCTTGACACCGGTGGAAGAGTGATGGCTCAATATGTTTGGATCGATGGTAGCGGACAGCATCTCAGATGCAAAACGCGGACACTTGACTTTGAACCAGTTGATCCAAAAGACGTCCCCGTTTGGAATTTTGACGGCTCCTCGACCGGACAAGCAACTGGCAGTAACAGCGACACATATCTGCACCCAGTTGCAATTTTTAGAGACCCTTTCAGAGGTGGAAAGAATAAAATAGTTCTGTGTGAGACTTATAAATACGACCACAAGCCATGCGAGACCAATCGAAGAAAAACATGCAATCAAGCGATGCAGAAAGTCAAGGAAAATCATCCATGGTTTGGCATTGAACAGGAATACACATTGCTTGATCAAGATGGGCATCCTCTTGGTTGGCCCAAAGGTGGATACCCAGCACCACAGGGACCTTACTATTGTGCAGTTGGGACTGGCAGAGTCTTTGGAAGGGAAGTTGTTGAAGCCCATTACAGAGCATGTCTTTATACTGGTATCAAAATTGCTGGAGAAAACGCAGAAGTAATGCCTGCCCAGTGGGAATTTCAAGTTGGACCTTGTGAAGGAATTGAGATGGGTGACCACTTATGGGTAGCAAGATTCTTGCTTGAGCGTGTTGCAGAAGATTTTGGCATCCTTGTGACCTTTGATCCTAAGCCAATGCCAGGAGATTGGAATGGTGCTGGTGCTCATTGTAACTACAGCACTGAAGCAATGCGTGAAGAGGGTGGTATCAAGTATATGTACGAAGCTGTGGAAAAGCTTTCAAAACGTCATGATTATCACATTGAGATGTACGATCCAAATAAGGGAGATGACAACAAAAGAAGACTGACAGGCCGACATGAAACATCAGACATTTACACCTTCTCATCTGGGGTTGCACACAGGGGAGCAAGTATTAGAATACCGCGCCAATGTGCCGAAGATGGAAAAGGTTACCTTGAAGACCGAAGGCCATCATCCAATTGCGATCCATATTCTGTCACTGAAGCAATTGTCAGGACAACTATCCTTGATGAAACTGATTAGATTTTGGAAGTGGGGAAAGACAAGGGACTTGTATAACTTATGCATATCATTTAGTGGAAGGGGGAAAGTAGATTATAGGTTTGTAAGTGTTATGTATTTGTTTCTTTCATCTTGTTATATTTATATCTGGTAAAACATTTATGCTTCCTTAATGTAATTACTAAAATTATATACTTATGAAGAAGGTGGATGCAAAGAAACAAACCAGAGTTCTGCCACACAAATGCAAAGTCACACTTTGATGATAACAGAAGAGGTGTGAAAGGCCTCAATGTGCCAGAAATCTGTCTGTTTCTTTGCATCCGTCTTCTTTAAAGTATATCATTTTTAAATTTTTGGTAAATATATGCTGGAAACTTATTCACAATTTTGCATTTATATACAATTAGAACTTGAAGCCTTTGATGAACAAATCAGGGGTATTCATGTGCACTAAGCTATAAAAGCAATATCATCCTAAACTGGCATTAACTTGTAAACTCTCAGAGTTCCAAAAATACAAGTTCCCATTATAGGGTACAATTGATGTCACGTTTCTAGTCATTCTATCTTTTAATGGACTTTCTGGAAAAAAACGTAAGAAAGGATACATCCACAAAGGCCTTTTAGGTACTGAAGATTTTTTTGGTTGAAGTAATACTTTGAAGTCAGATATATGCAGAAACAAACTATACGTTCAATTTTAACAGATCTGTTTCAGTTGGAAATTTATACATATGAATCATTGTATGCATGCATAAAGCTGATATATTTCATCGTTTGTAAGAGGTGTATTTTAAAATCTATTTACAATGAAGGACCTGAGTTaggacctgattacatggagttttcaaccccagggttgaatttcaacccacctggccgagttgaaatttcatcccacctctccattgattcctttattgattccaattttcgattacatggtgaaatctcaaccccggggatgaaataacacccggggctgaaatctcatcccaccttgagctagccgaggtgagacttttgagccgttaatccccattgttttcattacgtgaatgtccatgtaatcgcaatcttgtttcaaccccggggtcgaattgctattgacgcatgcaagttgtattgcgcatggcgagctttttcatacccggggatgaaattttacggctcgctttttcatacccgggagtgaaaatacccatgtaatagcaaatttatttcaactcaggcaggtgggttgaaactcaaccccggggttgaaaactctcatgtaatcgggcccttaAAAGATGAAATCTTGCAGGCCTATATATGGCCTATTGTATTTGATAATCGTGGCACGTTGCCAAACAAAGCAAGCCAACGAAACAATGGCCTGTGTAGGCATTTCTTTGTCCTAGTTATAAACCACGTCATTTAGCTCAGGTTATTCAGTTTGATATCGAATGGAAGGTGCTAACCTGGTGAAACCATGCACTATGATCCTTTGTAAAATATGACCGTTTGTTCGGCAACAAGACCATATCATATGGAAAATCCTGCACCTTATAGCTAATATCTTGCTAATAGTGGTCGAACTGAGGACAGTCTTATTTATTTAAAAGGTTGCTTTCAATAACACTAATTTATCATTTGAAGGTGCTTTTTCGTGTGTCTAAATCTTTCTAGTTTCTATTAAACAATCATATTTATGTATTACATATTGTAGAATTTCCGTTGGTATCAAAACTTTTTATTTTAACCGTGATTATTTTACTCTAACTATATGCTGAACGAGTATCGTATACTGTGCTTTAGTTTATTTAGAATATTTATAACAATCGATGTTGATGATGATACCGACTATTCTGCAAATTTCTGATTTCTCCTGTTTTGCTCCTATTTGCATGCGATGACTGGACTTTGTTGCGAACTAATTTGTttcaaaaatagccttaaataacgtactcatcatattaaacccataaacgcaataaaaacaccgaaatcagtagaaagaagactattaactcctgtaaaagaaacaataaccaaaataagcctgtaacaagagaaaaactgttaaatcctgtaagacaaaaccgaattaaccttaaaacctgaa

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03951 all species →	Gln-synt_N	Glutamine synthetase, beta-Grasp domain	Domain	Interproscan
PF00120 all species →	Gln-synt_C	Glutamine synthetase, catalytic domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008146 all species →	Domain	Glutamine synthetase, catalytic domain	Interproscan
IPR027303 all species →	Conserved_site	Glutamine synthetase, glycine-rich site	Interproscan
IPR008147 all species →	Domain	Glutamine synthetase, N-terminal domain	Interproscan
IPR050292 all species →	Family	Glutamine Synthetase	Interproscan
IPR014746 all species →	Homologous_superfamily	Glutamine synthetase/guanido kinase, catalytic domain	Interproscan
IPR027302 all species →	Conserved_site	Glutamine synthetase, N-terminal conserved site	Interproscan
IPR036651 all species →	Homologous_superfamily	Glutamine synthetase, N-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR20852 all species →	GLUTAMINE SYNTHETASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004356 all species →	Molecular Function	glutamine synthetase activity	Interproscan
GO:0006807 all species →	Biological Process	obsolete nitrogen compound metabolic process	Interproscan
GO:0006542 all species →	Biological Process	glutamine biosynthetic process	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01915	glnA, GLUL; glutamine synthetase	EC:6.3.1.2	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.