Gene detail

Detailed information of scaffold31.g41.t1 in Morbakka virulenta

Genomic Location: scaffold31:1343391...1383413
NR annotation: XP_015763862.1, PREDICTED: homeobox protein Meis1-like isoform X4 [Acropora digitifera]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

scaffold31.g41.t1

ATAACACAATGTCAGTTTGAACTGGTATGCATGAGTGTATAGATAAGGGCTTGCTAAAATCTGAAAGATTTGAAGCTGTGAAAATGTGTAGTTCACTTGCTTGCAATACATTTGCCATCATGAGCAGTTCCTGTTATGAAGCTATATACCCTTTCACGCAATGTAATAAACTTGGGCCACCATCCCTTAATTGGTCTTCGTCGACCCTGGATGTATCTTCTTCAAGCAACTGCCCAAATAATTCTCCAACGCATGGTCTCCCGTCCTCAGCAACGACGCAGAACACGTCGCAATCGTCGCCGCGACAGCAAACGAGTCCAGGAGACTCAACCTGCTCTGATAACTTGCAAGAATCGGAAGACAGCTTTATACAagatgacgaagacaaagagaagagaaaacagaagaaaagagGAATATTTCCAAAGATGGCTACAAACATTATGAAAGCTTGGTTGTTTCAACATTTAACACATCCGTACCCTTCCGAGGAGCAGAAACGACAGTTAGCTAACGAAACTGGCCTAACAATACTTCAAGTTAATAACTGGTTCATCAACGCACGCCGCCGAATCGTGCAACCAATGATAGATGCTTCAAATCGAGCAGGGAAATCTCCAGTGGTGACTGTATTCAAGTCAAGGAAACGTAAAAATTCAGGTTCCGATAGTATGAGCCCGGGACCACACTTTCCCCCGACGCCTGGACATTATGGGCCTCCATATTCACCAGAGCAACACTATGGTCCATTTCACGGTGGTTACCACTTGGATAGTGGTATAACACCACCACATTATGGCCCCAAAACATACATCCCTTGTAGTGATCCAACAGTTGTTGGTGGAGGTTCTTCAATAAATTCGATGCCCCCGAGCTGTTCGCAGATGAGACCACAGGTCTCTCCATATGGATATAGAACCCAAATTCCCCCTTCCCAAATGTATATGCCTACGCATCCACATACCGTAATGATGGCACCTCCAGGGGGTCATCATCCACATGGCTATCATTTAGGACATCCCCAAGTTATTCCATGTACAACTCAATCCCCTATGGGAACTCACGATGGTATGACACAGCCCGTGATGGATCTACATGCCTCCTAGAGGTAGTTATTCCATCATAACTTTTACTTACTTGCATGAACAAATATTAGTCACTGCGTCAGCACTGCAAATAATTGTGTCGTTTGCAGTACCACGAGAAAACTCGATGCTTTTGAGGCAATGCAGTTCGTCATTATTTTTGTCGTGCATGAGTTTTAACGAACGCATGAAGGACAACATGTATGATTATCACGACTAGCACAATGACGAGGAGGATGGCTGTATTGACAGTCACTAGTTTTTGCAAGAAAGCTTTGAAAGTTGTAAGAAGCTGTCTCAAGATATAACCTGAAGCAGCATTATAAGACAAGTGACACTATCTGAGGCACACGGTATTATTGATGAAAATATGTAGATTTACACACTGAAAACAAAAAGATAATCGGAAATAACAAATTAACATTTGGATTTTATCATTATCTTTTGTATGTGTAATCAGATTGTATAGAACGTTACCAAAATTTTGAAATCATATCTTTGATGTCTGAATGTCTGAATCAAGACGTTTTGCTATTAGCGATGGTGGTATAGGGGCTTAAATTACACTGATGTATATTTGTGTGACTTTATTATTCAGAAGGTTCGTCTTCAATATTAATTGCCAGAGTACATTTAACCTTTATTGACACAAATTAACTACTTGGAGACCCTGGTCACTCATAGTATGCGCCATCAAATTACAAATTAATTTCATGGATTTTAAGATAGGTGTGTCATTTGTAAAATAAACTACTAGATGCATGCTTTGTAACGTTTAGTAACAACTGATAATTAGTGAGCGCTGCGTTGGAAATAGTTTAATAGTTTACAGACCATTAGATTTATTTTTCAGCTCGCATTAGTTTAATCAATGGGTAAATGCAGGTCAAATGGCCACAGACTATCTCGTTAACTATATTTTCCCCTTGACCTGGTTTCATATAGCTGTTTGGAGTTTCCCTTAAAAATTGTTTCCCTTTTGTTTCTAAATGGGCACATGTAATAATTATTAACCAATCCTAAAGCATAATTCTAATTGCGCAACACTAAGTAGAAAGAATTAAGACCCGTACTGCAAGTTTTAATTCATCATCATTACTTCTCCCAGTCATGCAATGGTTATCGAATAATTGCTACTGTATGCATGTGTAATTTTCACAGCAGAAATATTTCCAGAAATTACTTAGAAAAAGGTACATTAATTAATTATAACACCTTTCCGTACTAGTTTGTCAAAAAACCACTCAAGTATGGTTTATTTGAAGGTGTAAATATGTTTCTGTTATAGAGACGAATGAGGATTTGTTTGTTTGGATAAGAAATTAAAGTTAGAATA

Protein

Uniprot

Uniprot term	Description
Q5U4X3	Homeobox protein meis3-A OS=Xenopus laevis OX=8355 GN=meis3-a PE=2 SV=1
Q6DIF3	Homeobox protein meis3 OS=Xenopus tropicalis OX=8364 GN=meis3 PE=2 SV=2
Q7ZY13	Homeobox protein meis3-B OS=Xenopus laevis OX=8355 GN=meis3-b PE=2 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05920	Homeobox_KN	Homeobox KN domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008422	Domain	Homeobox KN domain	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR001356	Domain	Homeobox domain	Interproscan
IPR050224	Family	Three Amino acid Loop Extension (TALE) homeobox	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11850	HOMEOBOX PROTEIN TRANSCRIPTION FACTORS	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0001228	Molecular Function	DNA-binding transcription activator activity, RNA polymerase II-specific	Interproscan
GO:0001654	Biological Process	eye development	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0008284	Biological Process	positive regulation of cell population proliferation	Interproscan
GO:0009880	Biological Process	embryonic pattern specification	Interproscan
GO:0009887	Biological Process	animal organ morphogenesis	Interproscan
GO:0045944	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K16670	MEIS2; homeobox protein Meis2	-	Transcription factors	ko03000	deepkoala