Gene detail

Detailed information of scaffold310.g3.t4 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold310:41841...63374
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold310.g3.t4

cgtggcgggacacctggacgcaaaagtcaaaacaaaaaagactcaagattagtcaaaaagtgataaaatagagttgctttacagtggtactaaagtatcagaacatcaaagtcagataaaggaaataatcatgagtgatggaagggtatcttctggtggatccagccaaagtgtaactccgcaaatgggacagaactacaacaatgatgatgtgattataaaggttgaacctttagaatatgatgaccttcaagaaactggtcctgtagcaacaacttcaattggaaaagaaaggactgtgaaagttcagccagtgcaagctctacaggcagcgtatccctcaatggttccaacaacctttggcagatttggagatgagagccagaacagagaaatagaacagagaagtgctagtttgtcccaagtgcatgacaagaatggcactagtttgacacaaatgcacgacaagagtggatatgaaaagtttacaaatcaggttcttgctgccattaaattggagtatcccaatgcccgtgaagatgaatgttatgaaatagcgatgagaagatggaatcagctcagcgaagaacagcgaaggaccttcagcatgaaaggaatgcatgcgggacagaaagagggaaatttccagagtggcaaacttcgaggtattcactacgatgttgatgacatcgaagaacaaggaataggaaacaatcatcgtcccaacgaatcatcaaaattcggtcgatgcacatggtgcaagaactttggaaacctcaacgattacacatcaaatcttcaaggtcgggaaatatattgcactggactttgctcaaaggaatgcttcgaacaagctgcgcaaaagatccttaatgttgagaccggttacggacttgtatccgctgtttatccggaaacttctccaatacatgcaaacataaacctggaccggctgaatgcagagcctccttctggtaaagacattcagcaaagtcatatggtacgacctcagtttgatgctaccaggcaacatggccaatctattgtgtctaggccacatgtcgagattcatagacctcgtcacgttgcaacaagacccccgtctaacccttcacaaaatgctaacattggtagagcatctcagtggaatattgaaaacgtgcaaagtttgagctcgggggaacatattcgtgcttcgactacagcttcaaagatgtcaagaaattcaattaaattttgcaatgtatttttaaaattgaaactgaagtataaacctctttccttacagcatagaactcctcaacaaaaccagttcaaagtccgcatgaaacttgaagctgaagatccaaagcaagagtctactgtgtccattgcgactgttattactgtcttaggcccacgtgttcgacttcgattcgatggctgcaataaaccagaggatgtttggcagttggttgattctaagaagattcaccctgttggttggtgtgagggtaatggaggagtattaaagcaaccaactggatttagcgtagatgttgggacatataccgaatttctgcagaagaccttacgaaatgcagaacttgccccaatgaatgcatttaaaacggaacccgctgcaccaaaagacaacaaatttattgttggtatgaagcttgaagctgttgataagaacaatcccgcactgattggagtttcgacaatcacagaagtagaaggagagaagatcaaagtagaattcgacgggtataaaagaaccggatattggacagtttatcatgacagagatttgtttcaagttgggtggtgttatgctaatggatacccactgcagcctcctggtggtggcagaattctacgacctgaacctcaattaccaagtaatgaaatcgcgagttcaagattatcaccgagctccagagaaaaaagggcattccaaccaacgacagaaccacgagtcactggtcatggagacgttgatgttcacgtaaatgttgaatgcaaccctggtccatatttaaactcagagaaagtggctgcaattccttcaacttataaaggagacataagtgttgttatgaagaccattctcgaagatttcattcgatgtgcgtatgatccgaagactgtactcggtttcttgaaaccaggtcgtggcaatatctccataaacgcagtatctgacggtgtagtgttcaattgttatttatcgaatatcgagcgagtttctactttctggcaaatcatggaacaattttgtgacaatttacgatgctgctctaatatgatcagtggatttgaacttcaaactgcctgccctcaatgtggtaggggtccaccgtcaaagagaggatcagcgaattctgcgaaaaggacttatgaaatgcaaggtgcaaccaaggatagcaattcgatggtttgtatctcaagcacacccgacagtacagggatgaatgcaggagagacatttgaaagtagaagagaagttgcaagagaatcaccgaaaagaagaagggacgaatcagttgtgtcacaagtaacaaccagtccgcgaagctggtctgtagatgatgttgctaaattcatagaaaagacggacttgaaagatcttgctgctctgtttcaggacaatgacatcgatggaaaggcacttcttctactaaaaagagacattattatcaattacatgggactaaaaatcggaccagctgttaaattactggacttgatcgatgaactgaaagatctggatacaagattacggtagatttttgtgcaatgtattgaggtaatttttgtagaaattgtagaaatatagaaatgagtagggtatatttatgggcgtcggtgaactggactagcaccccagcacaatcattctattcatcacttttttgaatgcaaatctttagataagcatcggtgtaaatagaaatctttaataaagattaacagagatt

Transcript

scaffold310.g3.t4

CGTGGCGGGACACCTGGACGCAAAAGTCAAAACAAAAAAGACTCAAGATTAGTCAAAAAGTGATAAAATAGAGTTGCTTTACAGTGGTACTAAAGTATCAGAACATCAAAGTCAGATAAAGGAAATAATCATGAGTGATGGAAGGGTATCTTCTGGTGGATCCAGCCAAAGTGTAACTCCGCAAATGGGACAGAACTACAACAATGATGATGTGATTATAAAGGTTGAACCTTTAGAATATGATGACCTTCAAGAAACTGGTCCTGTAGCAACAACTTCAATTGGAAAAGAAAGGACTGTGAAAGTTCAGCCAGTGCAAGCTCTACAGGCAGCGTATCCCTCAATGGTTCCAACAACCTTTGGCAGATTTGGAGATGAGAGCCAGAACAGAGAAATAGAACAGAGAAGTGCTAGTTTGTCCCAAGTGCATGACAAGAATGGCACTAGTTTGACACAAATGCACGACAAGAGTGGATATGAAAAGTTTACAAATCAGGTTCTTGCTGCCATTAAATTGGAGTATCCCAATGCCCGTGAAGATGAATGTTATGAAATAGCGATGAGAAGATGGAATCAGCTCAGCGAAGAACAGCGAAGGACCTTCAGCATGAAAGGAATGCATGCGGGACAGAAAGAGGGAAATTTCCAGAGTGGCAAACTTCGAGGTATTCACTACGATGTTGATGACATCGAAGAACAAGGAATAGGAAACAATCATCGTCCCAACGAATCATCAAAATTCGGTCGATGCACATGGTGCAAGAACTTTGGAAACCTCAACGATTACACATCAAATCTTCAAGGTCGGGAAATATATTGCACTGGACTTTGCTCAAAGGAATGCTTCGAACAAGCTGCGCAAAAGATCCTTAATGTTGAGACCGGTTACGGACTTGTATCCGCTGTTTATCCGGAAACTTCTCCAATACATGCAAACATAAACCTGGACCGGCTGAATGCAGAGCCTCCTTCTGGTAAAGACATTCAGCAAAGTCATATGGTACGACCTCAGTTTGATGCTACCAGGCAACATGGCCAATCTATTGTGTCTAGGCCACATGTCGAGATTCATAGACCTCGTCACGTTGCAACAAGACCCCCGTCTAACCCTTCACAAAATGCTAACATTGGTAGAGCATCTCAGTGGAATATTGAAAACGTGCAAAGTTTGAGCTCGGGGGAACATATTCGTGCTTCGACTACAGCTTCAAAGATGTCAAGAAATTCAATTAAATTTTGCAATGTATTTTTAAAATTGAAACTGAAGTATAAACCTCTTTCCTTACAGCATAGAACTCCTCAACAAAACCAGTTCAAAGTCCGCATGAAACTTGAAGCTGAAGATCCAAAGCAAGAGTCTACTGTGTCCATTGCGACTGTTATTACTGTCTTAGGCCCACGTGTTCGACTTCGATTCGATGGCTGCAATAAACCAGAGGATGTTTGGCAGTTGGTTGATTCTAAGAAGATTCACCCTGTTGGTTGGTGTGAGGGTAATGGAGGAGTATTAAAGCAACCAACTGGATTTAGCGTAGATGTTGGGACATATACCGAATTTCTGCAGAAGACCTTACGAAATGCAGAACTTGCCCCAATGAATGCATTTAAAACGGAACCCGCTGCACCAAAAGACAACAAATTTATTGTTGGTATGAAGCTTGAAGCTGTTGATAAGAACAATCCCGCACTGATTGGAGTTTCGACAATCACAGAAGTAGAAGGAGAGAAGATCAAAGTAGAATTCGACGGGTATAAAAGAACCGGATATTGGACAGTTTATCATGACAGAGATTTGTTTCAAGTTGGGTGGTGTTATGCTAATGGATACCCACTGCAGCCTCCTGGTGGTGGCAGAATTCTACGACCTGAACCTCAATTACCAAGTAATGAAATCGCGAGTTCAAGATTATCACCGAGCTCCAGAGAAAAAAGGGCATTCCAACCAACGACAGAACCACGAGTCACTGGTCATGGAGACGTTGATGTTCACGTAAATGTTGAATGCAACCCTGGTCCATATTTAAACTCAGAGAAAGTGGCTGCAATTCCTTCAACTTATAAAGGAGACATAAGTGTTGTTATGAAGACCATTCTCGAAGATTTCATTCGATGTGCGTATGATCCGAAGACTGTACTCGGTTTCTTGAAACCAGGTCGTGGCAATATCTCCATAAACGCAGTATCTGACGGTGTAGTGTTCAATTGTTATTTATCGAATATCGAGCGAGTTTCTACTTTCTGGCAAATCATGGAACAATTTTGTGACAATTTACGATGCTGCTCTAATATGATCAGTGGATTTGAACTTCAAACTGCCTGCCCTCAATGTGGTAGGGGTCCACCGTCAAAGAGAGGATCAGCGAATTCTGCGAAAAGGACTTATGAAATGCAAGGTGCAACCAAGGATAGCAATTCGATGGTTTGTATCTCAAGCACACCCGACAGTACAGGGATGAATGCAGGAGAGACATTTGAAAGTAGAAGAGAAGTTGCAAGAGAATCACCGAAAAGAAGAAGGGACGAATCAGTTGTGTCACAAGTAACAACCAGTCCGCGAAGCTGGTCTGTAGATGATGTTGCTAAATTCATAGAAAAGACGGACTTGAAAGATCTTGCTGCTCTGTTTCAGGACAATGACATCGATGGAAAGGCACTTCTTCTACTAAAAAGAGACATTATTATCAATTACATGGGACTAAAAATCGGACCAGCTGTTAAATTACTGGACTTGATCGATGAACTGAAAGATCTGGATACAAGATTACGGTAGATTTTTGTGCAATGTATTGAGGTAATTTTTGTAGAAATTGTAGAAATATAGAAATGAGTAGGGTATATTTATGGGCGTCGGTGAACTGGACTAGCACCCCAGCACAATCATTCTATTCATCACTTTTTTGAATGCAAATCTTTAGATAAGCATCGGTGTAAATAGAAATCTTTAATAAAGATTAACAGAGATT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12140 all species →	SLED	SLED domain	Domain	Interproscan
PF02820 all species →	MBT	mbt repeat	Domain	Interproscan
PF00536 all species →	SAM_1	SAM domain (Sterile alpha motif)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013761 all species →	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan
IPR021987 all species →	Domain	SLED domain	Interproscan
IPR004092 all species →	Repeat	Mbt repeat	Interproscan
IPR001660 all species →	Domain	Sterile alpha motif domain	Interproscan
IPR050548 all species →	Family	Polycomb group and chromatin remodeling factors	Interproscan
IPR038348 all species →	Homologous_superfamily	SLED domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12247 all species →	POLYCOMB GROUP PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003682 all species →	Molecular Function	chromatin binding	Interproscan
GO:0042393 all species →	Molecular Function	histone binding	Interproscan
GO:0045892 all species →	Biological Process	negative regulation of DNA-templated transcription	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11461	SCMH1; polycomb protein SCMH1	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.