Gene detail

Detailed information of scaffold313.g1.t4 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold313:34426...66085
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold313.g1.t4

agtttctcatgaatttacttatccttgacagcatacacaaattttctgatcatttcaattttctccatagaattcagtttcttggcactggtcaggaagtggcacagaagtggacgttcttcggaaatttgacggtgcagttactgagatcaaatgtagttctgcttgtaatggttgttcgttggcatcaacattattgctggagcccatcgatacacgaaaaagaccttttgaagcatgctcccgcacccttggaatccaagatggccgtattccatcttcaaacatcacagcgtccacatacctggatcgaaatttcctccccagctacgcaaggttatttcacagtgaccgaggtggttggtgtgccgcgaaaccaaatagaaagcagtttatccaagttgacctaggagtcatgcatacaattagcggcgtatcaacacagggatacaagacgtatagtgactgggtgacgtcatataagatcgtttataaagctgatgatgatgtgtggaaggagtataccttatttggcaacccaaagagaattgtccgtggaggatcacataatagcaacttgattattaaacacaaagatagtgggaaatgtgttcgattaaaaagaaacaagaataaggatggtattactgttgtgctgagaaaatgtggtgatatatcgcaaattttgttggtgttaacaaagacaggtgttactccattgaagccatacttcaaagagccaaaagaaatcagagatgtcgacatgttcactagccaaacatttcactgctctttcgtgagtgaccccccttcaatttcagcttggagtaaaggaatacctcttcgaaatgggggaacaaagctgctcgatgaaaatgtcaagactcagagtaatggatcgctccatattagtaatgtaacttggagtgaccgggggatctatttttgcaatgttttgaattctgagggatcagaaacgaggctcgtagagctgactgtgcatgtacctccaagaatcacactgtcatcaaagagaaagagcatctatgttggagattcagctagagtcacgtgtcatgccacaggggaaccatatccactggtcgcctggtacaaacttcctgatctaaacagttcaaatccacgaaatcgtggtcgtgttgatggaaacatcagtatagatagagttactaaagatgatggtggtacttatatctgctcagcaaagaatatcgttggaaaagcgactgcaagttttcgcttaattgtcacagctacttgcaacttcatccatatacgctattctgatgtcatcccgaatagatcattcttcattgaaaatgaagaggtgaaagtcagatgtcagaaaggcttccgaatgattggtgcaccacgattactgtgcacgagatatggaaattggagtcattcgtttccaagatgcgtagatatcaatgagtgccaaaaaccttttgctgacatacaagaaggcagtggacaagttgctaatcttgatacagaacctgatgtttgtcacgtgaacgccgtatgctcaaatactattggttcatttcgatgcgcctgtgaagagggttatgaaggcaatgggtttacttgtaattggcggtcgactacgacgaaagcacctaccacgataccgacaacaacaacaacgccaaaaccgactacaactgatgcgccaacgaaagagatatcactcgcaacaaaaggaacaagcgaagagagaacaacaacagaaataccgttgacaacaacgctagctccatactcacctgccatatggagtgtgtacttgaactttacacaaggtctcgtccctgagttggtattactgcggaacttattgcatcattctctaacaatacgacaattaccaaatatggaaagaaagcttcaaggtcttagtatttcactggctgctctgaaaagtgtgtcagtttccaaacgaccgagcaggcatcatccttcccatggtactccaaagcgaaatgttgagatgtttacaaatgttgtgagctcacttcttgattctgcaaattctgatgtttggaagaaaaaacaagagtccacaaatgctgcgtcagaattgttatctatcgttgacaaatacaccagaaagcgacttaaagattgggcttcaaagagtgacgacgttgaaatcgtggcggagaatattgctgtgcgaattaaagatctatcaaatttagttggtacgaatgatgctgagattagcctgttttcaaacagcaggaatactccagattcacgagttgtcttcaataagagcactttcgaagatgttggtacgaatgatgctgagattagcctgttttcaaacagcaggaatactccagattcacgagttgtcttcaataagagcactttcgaagatggaaaacaaaccttcgctatcctaattcaatacaagaacttagaaaagatattctcaagtggatcagctgatgatgcaaacaggactcattttgtgagtaaaatcgtatccttgactgttgcaagcataaaagacggagagaaactaaagaagccagttcttttggaattcaaaagggagcagataaagtctcaatcacccgaatgcgtcttttggaaatttaacggttcaaagaatggtggttattggtctgatgttggttgtaaattgtacaaaggcaaatcaatgaaaaaatcgaaatcaacaatcacctgcgaatgtaatcatctcactaactttgctgtgattgacagaaggccgatcagtgggccgcacaagggctcaggattcttcgtgttgacattaagcctgagtgtgatgataggctgtggcatctccattttctttgcattcctcacttgcatatcacacttatgttgctcaactcacgtgagatcagacagaagaatcattatgatcaatatatgtgcttgtatcctgttgggatcaaccattttccttggtggtgctttgttatcatctttcaaattgataaaagatgatatttcaaagtatttctgcctggtgatgtctggctcattacagttattcttcatagccttcttcagttggatgctagctgaagccattcagatattcttatccacacgaactgttattgataaaggcagtggcaagctgactatgttctaccttcttggctggggtgagtctttgattgctctgtttacttatacttttcaaattcacatctattcgtatgctaaccaacaaggacggattttgtaaggcaatggcatgagttgcttttgttgacacctgaattcaaagcgattagtggtcacagacaaaggaaattccctccaccagtaattcaaaacaaacaaagccgcaaaag

Transcript

scaffold313.g1.t4

AGTTTCTCATGAATTTACTTATCCTTGACAGCATACACAAATTTTCTGATCATTTCAATTTTCTCCATAGAATTCAGTTTCTTGGCACTGGTCAGGAAGTGGCACAGAAGTGGACGTTCTTCGGAAATTTGACGGTGCAGTTACTGAGATCAAATGTAGTTCTGCTTGTAATGGTTGTTCGTTGGCATCAACATTATTGCTGGAGCCCATCGATACACGAAAAAGACCTTTTGAAGCATGCTCCCGCACCCTTGGAATCCAAGATGGCCGTATTCCATCTTCAAACATCACAGCGTCCACATACCTGGATCGAAATTTCCTCCCCAGCTACGCAAGGTTATTTCACAGTGACCGAGGTGGTTGGTGTGCCGCGAAACCAAATAGAAAGCAGTTTATCCAAGTTGACCTAGGAGTCATGCATACAATTAGCGGCGTATCAACACAGGGATACAAGACGTATAGTGACTGGGTGACGTCATATAAGATCGTTTATAAAGCTGATGATGATGTGTGGAAGGAGTATACCTTATTTGGCAACCCAAAGAGAATTGTCCGTGGAGGATCACATAATAGCAACTTGATTATTAAACACAAAGATAGTGGGAAATGTGTTCGATTAAAAAGAAACAAGAATAAGGATGGTATTACTGTTGTGCTGAGAAAATGTGGTGATATATCGCAAATTTTGTTGGTGTTAACAAAGACAGGTGTTACTCCATTGAAGCCATACTTCAAAGAGCCAAAAGAAATCAGAGATGTCGACATGTTCACTAGCCAAACATTTCACTGCTCTTTCGTGAGTGACCCCCCTTCAATTTCAGCTTGGAGTAAAGGAATACCTCTTCGAAATGGGGGAACAAAGCTGCTCGATGAAAATGTCAAGACTCAGAGTAATGGATCGCTCCATATTAGTAATGTAACTTGGAGTGACCGGGGGATCTATTTTTGCAATGTTTTGAATTCTGAGGGATCAGAAACGAGGCTCGTAGAGCTGACTGTGCATGTACCTCCAAGAATCACACTGTCATCAAAGAGAAAGAGCATCTATGTTGGAGATTCAGCTAGAGTCACGTGTCATGCCACAGGGGAACCATATCCACTGGTCGCCTGGTACAAACTTCCTGATCTAAACAGTTCAAATCCACGAAATCGTGGTCGTGTTGATGGAAACATCAGTATAGATAGAGTTACTAAAGATGATGGTGGTACTTATATCTGCTCAGCAAAGAATATCGTTGGAAAAGCGACTGCAAGTTTTCGCTTAATTGTCACAGCTACTTGCAACTTCATCCATATACGCTATTCTGATGTCATCCCGAATAGATCATTCTTCATTGAAAATGAAGAGGTGAAAGTCAGATGTCAGAAAGGCTTCCGAATGATTGGTGCACCACGATTACTGTGCACGAGATATGGAAATTGGAGTCATTCGTTTCCAAGATGCGTAGATATCAATGAGTGCCAAAAACCTTTTGCTGACATACAAGAAGGCAGTGGACAAGTTGCTAATCTTGATACAGAACCTGATGTTTGTCACGTGAACGCCGTATGCTCAAATACTATTGGTTCATTTCGATGCGCCTGTGAAGAGGGTTATGAAGGCAATGGGTTTACTTGTAATTGGCGGTCGACTACGACGAAAGCACCTACCACGATACCGacaacaacaacaacgccaaaaccgactacaacTGATGCGCCAACGAAAGAGATATCACTCGCAACAAAAGGAACAAGCGAAGAGAGAACAACAACAGAAATACCGTTGACAACAACGCTAGCTCCATACTCACCTGCCATATGGAGTGTGTACTTGAACTTTACACAAGGTCTCGTCCCTGAGTTGGTATTACTGCGGAACTTATTGCATCATTCTCTAACAATACGACAATTACCAAATATGGAAAGAAAGCTTCAAGGTCTTAGTATTTCACTGGCTGCTCTGAAAAGTGTGTCAGTTTCCAAACGACCGAGCAGGCATCATCCTTCCCATGGTACTCCAAAGCGAAATGTTGAGATGTTTACAAATGTTGTGAGCTCACTTCTTGATTCTGCAAATTCTGATGTTTGGAAGAAAAAACAAGAGTCCACAAATGCTGCGTCAGAATTGTTATCTATCGTTGACAAATACACCAGAAAGCGACTTAAAGATTGGGCTTCAAAGAGTGACGACGTTGAAATCGTGGCGGAGAATATTGCTGTGCGAATTAAAGATCTATCAAATTTAGTTGGTACGAATGATGCTGAGATTAGCCTGTTTTCAAACAGCAGGAATACTCCAGATTCACGAGTTGTCTTCAATAAGAGCACTTTCGAAGATGTTGGTACGAATGATGCTGAGATTAGCCTGTTTTCAAACAGCAGGAATACTCCAGATTCACGAGTTGTCTTCAATAAGAGCACTTTCGAAGATGGAAAACAAACCTTCGCTATCCTAATTCAATACAAGAACTTAGAAAAGATATTCTCAAGTGGATCAGCTGATGATGCAAACAGGACTCATTTTGTGAGTAAAATCGTATCCTTGACTGTTGCAAGCATAAAAGACGGAGAGAAACTAAAGAAGCCAGTTCTTTTGGAATTCAAAAGGGAGCAGATAAAGTCTCAATCACCCGAATGCGTCTTTTGGAAATTTAACGGTTCAAAGAATGGTGGTTATTGGTCTGATGTTGGTTGTAAATTGTACAAAGGCAAATCAATGAAAAAATCGAAATCAACAATCACCTGCGAATGTAATCATCTCACTAACTTTGCTGTGATTGACAGAAGGCCGATCAGTGGGCCGCACAAGGGCTCAGGATTCTTCGTGTTGACATTAAGCCTGAGTGTGATGATAGGCTGTGGCATCTCCATTTTCTTTGCATTCCTCACTTGCATATCACACTTATGTTGCTCAACTCACGTGAGATCAGACAGAAGAATCATTATGATCAATATATGTGCTTGTATCCTGTTGGGATCAACCATTTTCCTTGGTGGTGCTTTGTTATCATCTTTCAAATTGATAAAAGATGATATTTCAAAGTATTTCTGCCTGGTGATGTCTGGCTCATTACAGTTATTCTTCATAGCCTTCTTCAGTTGGATGCTAGCTGAAGCCATTCAGATATTCTTATCCACACGAACTGTTATTGATAAAGGCAGTGGCAAGCTGACTATGTTCTACCTTCTTGGCTGGGGTGAGTCTTTGATTGCTCTGTTTACTTATACTTTTCAAATTCACATCTATTCGTATGCTAACCaacaaggacggattttgtaaggcaatggcatgagttgcttttgttgacacctgaattcaaagcgattagtggtcacagacaaaggaaattccctccaccagtaattcaaaacaaacaaagccgcaaaag

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13927 all species →	Ig_3	Immunoglobulin domain	Domain	Interproscan
PF00002 all species →	7tm_2	7 transmembrane receptor (Secretin family)	Family	Interproscan
PF01825 all species →	GPS	GPCR proteolysis site, GPS, motif	Motif	Interproscan
PF16489 all species →	GAIN	GPCR-Autoproteolysis INducing (GAIN) domain	Domain	Interproscan
PF12947 all species →	EGF_3	EGF domain	Domain	Interproscan
PF07686 all species →	V-set	Immunoglobulin V-set domain	Domain	Interproscan
PF00084 all species →	Sushi	Sushi repeat (SCR repeat)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR046338 all species →	Homologous_superfamily	GAIN domain superfamily	Interproscan
IPR000436 all species →	Domain	Sushi/SCR/CCP domain	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR017981 all species →	Domain	GPCR, family 2-like, 7TM	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR003598 all species →	Domain	Immunoglobulin subtype 2	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR000421 all species →	Domain	Coagulation factor 5/8 C-terminal domain	Interproscan
IPR000832 all species →	Family	GPCR, family 2, secretin-like	Interproscan
IPR008979 all species →	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR000203 all species →	Conserved_site	GPS motif	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR001881 all species →	Domain	EGF-like calcium-binding domain	Interproscan
IPR000152 all species →	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR032471 all species →	Domain	GAIN domain, N-terminal	Interproscan
IPR035976 all species →	Homologous_superfamily	Sushi/SCR/CCP superfamily	Interproscan
IPR024731 all species →	Domain	EGF domain	Interproscan
IPR013106 all species →	Domain	Immunoglobulin V-set domain	Interproscan
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12011 all species →	ADHESION G-PROTEIN COUPLED RECEPTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004888 all species →	Molecular Function	transmembrane signaling receptor activity	Interproscan
GO:0007166 all species →	Biological Process	cell surface receptor signaling pathway	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0004930 all species →	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007189 all species →	Biological Process	adenylate cyclase-activating G protein-coupled receptor signaling pathway	Interproscan
GO:0007186 all species →	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold313.g1.t4.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.