Gene detail

Detailed information of scaffold318.g24.t1 in Morbakka virulenta

Genomic Location: scaffold318:655963...675631
NR annotation: XP_039291190.1, uncharacterized protein LOC111047100 [Nilaparvata lugens]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

scaffold318.g24.t1

tacaaacaaagtacccaaaatatggaaacttgcaaaagtggttgctgtgcttaaacccaagaaaccaccaaatgctgctagtagttacagaccagtaagtctgctttgtgttccctctaagctttacgaaagattactttacaatcgtatacaaccaatcactgaaacgatcttacccaaggaacaagcaggtttccggccaggtcgatcttcccaggatcaagttgtattacttacagaggatattgaatatgcttttgacaagaaacttaaagcaggcgttgtatttgttgacctttctgcagcctatgacactgtgtggcaccgtgggcttacactgaaactgttgagaacaataccatccaaagaaatggttcgtgtcattatgaccatgatatcacagcggcgatttcatgtacatgtgggtgcaaagaaatcacgctgccgaaccctaactaatggtgtaccacaaggttcagtcattgctccacttcttttcaacctgtacacacatgatatacccacaactatcagtaaaaaatacatatatgctgacgatatagcccttaagacttgtcataagacgtttgatgtaattgaaagaacattatcacgagatatggatatcatcagcaaatacttcaaaaattggagactcaaactgaatatcaccaaaactgtttccagtgtgtttcatcttgttaatcgaagagctgattatgaactcaatgtctcaatatctggcatgaggttaccttttgagaaaactcccaagtaccttggtgtcacactagaccgtactctctcatacaaacatcatttgattgaagtctcttctaaagttaccaagcgatgtaacctactaaggcgtattgctggctgtcgatggggtgctgatttctcgactttgaaatcatctgctttagccttgtgttactctgctgcggaatattgttctcctgtttggagccaaagccatcactgcaataaagttgatgttgcacttaatgaatgcttgagactagtgagtggttgtataaaatcgacttcaactgatgttcttcctattctttgtggtattgagcctgccgacttaagaagagataaaaatatattgaatttatataatcgtgtgctatcagaggaaaggcacattcttgaaaaattggttgaatatccacttacaaacaataggttgaagagcagagttccactttcgaatcgcatgcaccttttagcttccaccataaacgatacagcatctgtcaaatcttgggctgctaatgtgtggaaacagcgatggagtaatacagacaaccagctttcccaatttattcctgaacctacggtgaaacctccaggacatgacctgaagcgtgaacaatgggtgctcttaaatcgattacgatctggatatggacgatatgccgatttcatgcatagaattggtctaagggacaatccattttgtcgttgtggtgaaattcaatcccatcaacacgtattgatttgccaactgatagGCAACGGGTTTATAGATTTCCCAGAATTTCTTTACTTGATGGCTAGGGAAATGAAGGGAACTTCAAGTGAAGAAGTCATGCGAGATGCATTTAGAGTATTTGATGCTGATGGAAATGGTGTCATTAGTCTCAACGAGTTAAAGAAAATTATTATGAGTATGGGAGAAGATTACTCAGAAGAAGAAACGGATGAGTTTTTACTGGAGTTTGACAAAGATGGTGATGGTACCATTAATTATGAAGAATTTTTCAATACTATGAAACAAACAGGAGAACTTGCAGCCGTTCCCAATGATAAAGGTACATTTCTACAAACTGATAATTCATGATAACGCATCTATTTTTGGCCTATACATTGACATCTAACGTCAAAGTTGGAGAAAAATTATCAAACACTGTTGGACGCCGTGTCAAAGTAAAGAATAATACGATAATTCTTTTCAAGGGCGATTACATGATATTATGAGAACGTCAAACAGAGCTTCTGTATTTAAAAAAAACAGTTTTAAATTAATGAACCAGCATGGTACAGAAAACAAATTTGGATGGAAAAAATTTGAAATTTTTAAAACTCAAACAGGATCACTAATAGTACATAAGCTTCGTTATTTAATTTTTAGAAATGTTTGTTTATCTAGTTTATTTCATTATTTGTATTCAGTTTAGCCAGAGGTGATGTTGGCCGGAGGTGATTCCCCCCAGATTTACTTCACGGAAGATTTCTCTTTTAAAGTCTCGTTATTTTTGATAATCTTAATCACTAGGACGACATTTTTTTCCGAAAAAGCACTCTCGTTCTAAATTTATTTTGTATAAAGCAAAGAAAAGATAGCGAGAGAGCATTTCTTTGGCATTTTTCAATTTAGACAAAAAACCTGTTGTTTTATTTTATTTTATCGTATTGAAAATCTAAAGAAGGCATTCTTTGAAAGGGATACAGCATTACAACAAAACCACCCAACCCACACACTACCTCACTACCCATCTCGTTGTTTCCTAAGACATTCAGCACTTTTCAAAGAAATTGCTCTGAGTAGTTCAGCTGTCTGTTTCCATAATTGTATTCCCTGCCTCCGTTGTTGAACTCAAATGGAGTGCTCTTACCAGGTTACCAGTTTTATGGATGTACATAGAGACCTCTTGGTTTCAGGTTAAACCATAAAATTCTTTACTTTCATAAAAAAGCAATACGAAAAAAAAATTTTCCTAAGTTTTAACTATGTTGAAATTTGAAATGTGAGATTTCTAGTTTTTACAAAATAGCTTTCTTCTCAATATTATGCCAGATAAATTGCGCCTGGATGCCATTAATACATGTTGTAACTTAGAGTTTTAATTTGAAATGGTACATCTATTCCTTGCGCTCTTATGGAGACATACTTTGCACAGTTTAGTATAGCAAAGAATATTAGTGGGACAACGTGTTTACTTTGGCTGACCGAAATGCAGTAAAAAGTGGGGGAAAATAAGGTAAATCCCACGGTGGATAAACGTGAAACTTTTACTAAGAAAATTGTTGAAAATGAAATGTGCGAGGCTTTTTATTAACAGACAATACAAATTGTTTTTCTATCCAACCTTCGAAAAATATGCTTGAGGAGTTAGAATGGTATAACTAAATTTATTAGGGAAAAAACGATCCTTTGTTAAAGTTTCAATAAGCTGTGGTATGGGCATTCACATTGTACATGCAAAATTAGAGCACATTTTTTACAATAAAATAACTTTTAACAAGTAATCGCTTTAATATTTAACGTAAATTGGTCTCAAACCAGTaaaaatatgtaagaggcatcgagatggttcgaaccggtgccctatggattgtatatccatttgctcttccagttcaggtgtcggtgctatgttcatgactagatcaattttTAATCTAATGTTTAACTAATCATTTCATAACGTAGATTTTGTATGATATACTATGTTGTAGTTACACGTTGTTTCTTATAAAGTGGCAAGGTAATT

Protein

Uniprot

Uniprot term	Description
Q95SX7	Probable RNA-directed DNA polymerase from transposon BS OS=Drosophila melanogaster OX=7227 GN=RTase PE=2 SV=1
P21328	RNA-directed DNA polymerase from mobile element jockey OS=Drosophila melanogaster OX=7227 GN=pol PE=1 SV=1
Q9NBX4	Probable RNA-directed DNA polymerase from transposon X-element OS=Drosophila melanogaster OX=7227 GN=X-elementORF2 PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF13499	EF-hand_7	EF-hand domain pair	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR002048	Domain	EF-hand domain	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan
IPR018247	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR052560	Family	RNA-directed DNA polymerase, mobile element	Interproscan
IPR011992	Homologous_superfamily	EF-hand domain pair	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR36688	ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K03510	POLI; DNA polymerase iota	EC:2.7.7.7	DNA repair and recombination proteins	ko03400	deepkoala