Gene detail

Detailed information of scaffold321.g2.t2 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold321:4444...36724
NR annotation: no NCBI-NR hit recorded
Species abbreviation AAURI2 · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold321.g2.t2

acagagaaggaagacttcagtgatgttgcaagattgcttgtaaatgaggcatttgaagagtgcgatttgaatcaaactgggatgttatcaatgcagaactttcaaggttggttaggtggtcatcgagaacttgtgaaagctgtctttaattttccattccaatcgatcatgaaaaaatcagagaaatatggagaactgaaagccgatgatgcacgaaatacacggctatatcctcaaacatggatggatgagtttagcgaaaatggaaattcaaaagatgcaaaattggctacaagtcttgtgaacgcaaagtacctgtggagcccacttttccctcaatcatcaagcaaatttcccccaagcagatcgaagcatgccgcagtcctgtatcatgggcatatttatatttttggcggacgaggaagaacatcaacacttaaagatttatggagatacagtttagttgaaaatgcatgggatttaacgaaaggccaaagtggttctattccaccggcattgcaagaacacactgcagtcgtttataagaatgatgcatatatcttcggtggagcatttgcaactgaccaaagaacaccattctggagctacgaatttgaaagtttaacttggaaagatctaagccgaagaaaatttcagaaggaaccatcaaatcgccgagcccacactgcagttgtttacagggattcaatgttcatttttggtggatatttagatactggcagtgcaactaatgaactgtggagatattgctttacaacacttcgctggtatcttctgactcctaaagaaggcactgaagttatcacagcaagacattcacattcggcagttgtgcatagtaatgcaatttggattttcggtggattcgagaacagaggaaggaagaacgatctttggaaatgggattttgaacttttcacatggacgagaattcgaacgaagggaggtccttcgcttgtggctgggcacactgcttcaaagattggttctctaatgatctttttgggtggagaaggaaatacagaactcaagaacgaaacttggacattcaattttgataccattcagtggactaagatcacaccattgagttcaataaccccaacattacgaagccatcacacagctgttgttttaaatccgtattctgcacactgtggaccacttccgattagccgcccgacaacaaccaaatctgcacccgacactcgtgataatagactacgcagaaacagtcctggcttcaatccgtttccacgtgtagcatcagctgactcaattttagactacccgacaaaacgtatgataaaagggaaaagtctggacctgtcatttgagctagacaatggcggatacgacaaaagttttccggatgtgtcgcacggccaatcggatgaaatactgaacacagacttacagatgtcgtcggacagaaacgttatcaacgttctaccttacgacgaaacaagtttacaacttgagatgccgacagtcgtgcacgataattgggctatatttattattggcggtaaaggaaaacaaagcactgacatgcacaaaacatctgttgatatatggcgatgcgacattggacaagatgtcggatctcattatcaaatcaagcccatcactaggaaggagcagcaagtagacacaagacctcgtcgaacacaaacggcaaagtcacgtgagaaactgtcttacgatttattcgataatgaatttgagaacaggggtcaaagggagcagatacctgcaaagggggtaaaggatcgggataacttgattatcacagacctaactgttgatgagacggaaaatactttttcgacgttagaaaataagcatctcttacggtagtttgttcatagtatttccaaaaattctggctttgatgctgatatcgccgttagaaattcagtcatcatacaatgcattcatattttaatacccatacacgttttttttataagaaactggtttataagaaactagtactacgatgaccaaaaatttaagaaactctagtactacgc

Transcript

scaffold321.g2.t2

ACAGAGAAGGAAGACTTCAGTGATGTTGCAAGATTGCTTGTAAATGAGGCATTTGAAGAGTGCGATTTGAATCAAACTGGGATGTTATCAATGCAGAACTTTCAAGGTTGGTTAGGTGGTCATCGAGAACTTGTGAAAGCTGTCTTTAATTTTCCATTCCAATCGATCATGAAAAAATCAGAGAAATATGGAGAACTGAAAGCCGATGATGCACGAAATACACGGCTATATCCTCAAACATGGATGGATGAGTTTAGCGAAAATGGAAATTCAAAAGATGCAAAATTGGCTACAAGTCTTGTGAACGCAAAGTACCTGTGGAGCCCACTTTTCCCTCAATCATCAAGCAAATTTCCCCCAAGCAGATCGAAGCATGCCGCAGTCCTGTATCATGGGCATATTTATATTTTTGGCGGACGAGGAAGAACATCAACACTTAAAGATTTATGGAGATACAGTTTAGTTGAAAATGCATGGGATTTAACGAAAGGCCAAAGTGGTTCTATTCCACCGGCATTGCAAGAACACACTGCAGTCGTTTATAAGAATGATGCATATATCTTCGGTGGAGCATTTGCAACTGACCAAAGAACACCATTCTGGAGCTACGAATTTGAAAGTTTAACTTGGAAAGATCTAAGCCGAAGAAAATTTCAGAAGGAACCATCAAATCGCCGAGCCCACACTGCAGTTGTTTACAGGGATTCAATGTTCATTTTTGGTGGATATTTAGATACTGGCAGTGCAACTAATGAACTGTGGAGATATTGCTTTACAACACTTCGCTGGTATCTTCTGACTCCTAAAGAAGGCACTGAAGTTATCACAGCAAGACATTCACATTCGGCAGTTGTGCATAGTAATGCAATTTGGATTTTCGGTGGATTCGAGAACAGAGGAAGGAAGAACGATCTTTGGAAATGGGATTTTGAACTTTTCACATGGACGAGAATTCGAACGAAGGGAGGTCCTTCGCTTGTGGCTGGGCACACTGCTTCAAAGATTGGTTCTCTAATGATCTTTTTGGGTGGAGAAGGAAATACAGAACTCAAGAACGAAACTTGGACATTCAATTTTGATACCATTCAGTGGACTAAGATCACACCATTGAGTTCAATAACCCCAACATTACGAAGCCATCACACAGCTGTTGTTTTAAATCCGTATTCTGCACACTGTGGACCACTTCCGATTAGCCGCCCGACAACAACCAAATCTGCACCCGACACTCGTGATAATAGACTACGCAGAAACAGTCCTGGCTTCAATCCGTTTCCACGTGTAGCATCAGCTGACTCAATTTTAGACTACCCGACAAAACGTATGATAAAAGGGAAAAGTCTGGACCTGTCATTTGAGCTAGACAATGGCGGATACGACAAAAGTTTTCCGGATGTGTCGCACGGCCAATCGGATGAAATACTGAACACAGACTTACAGATGTCGTCGGACAGAAACGTTATCAACGTTCTACCTTACGACGAAACAAGTTTACAACTTGAGATGCCGACAGTCGTGCACGATAATTGGGCTATATTTATTATTGGCGGTAAAGGAAAACAAAGCACTGACATGCACAAAACATCTGTTGATATATGGCGATGCGACATTGGACAAGATGTCGGATCTCATTATCAAATCAAGCCCATCACTAGGAAGGAGCAGCAAGTAGACACAAGACCTCGTCGAACACAAACGGCAAAGTCACGTGAGAAACTGTCTTACGATTTATTCGATAATGAATTTGAGAACAGGGGTCAAAGGGAGCAGATACCTGCAAAGGGGGTAAAGGATCGGGATAACTTGATTATCACAGACCTAACTGTTGATGAGACGGAAAATACTTTTTCGACGTTAGAAAATAAGCATCTCTTACGGTAGTTTGTTCATAGTATTTCCAAAAATTCTGGCTTTGATGCTGATATCGCCGTTAGAAATTCAGTCATCATACAATGCATTCATATTTTAATacccatacacgttttttttataagaaactggtttataagaaactagtactacgatgaccaaaaatttaagaaactctagtactacgc

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13415 all species →	Kelch_3	Galactose oxidase, central domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051568 all species →	Family	LZTR1/Attractin	Interproscan
IPR015915 all species →	Homologous_superfamily	Kelch-type beta propeller	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46376 all species →	LEUCINE-ZIPPER-LIKE TRANSCRIPTIONAL REGULATOR 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20285	RABEPK; Rab9 effector protein with kelch motifs	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.