Gene detail

Detailed information of scaffold326.g3.t1 in Morbakka virulenta

Genomic Location: scaffold326:91296...97470
NR annotation: RKP18110.1, RNA-binding domain-containing protein, partial [Rozella allomycis CSF55]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

scaffold326.g3.t1

GTTTTCCGCTGGTTTTCTACCATCTGCTTTCTCTTTCACCCGTGGATTTTCTTGGGGAAAGGCGCCATTTTTATTCAGCGAAGAAATTTCCAAGTGCACTGAAGGAAAATAAACATGAGTAGCGACGTGGGTAAAATTTATGTCGGTGGCCTGCCATTTTCAACGGACAATGAAGGTCTCCGTGAAATGTTTGAAAAATATGGAAGAATTGAAGACGCCTTTATTGTGATGGACAAAGAAAAGCAGACCTCCAAAGGTTTTGGCTTCGTCACATTTGGAAATGAGATGGATGCTGAAGATGCAATTAAAGCAATGAATGGCAAGGACTACGGAGGACGTGATCTCATTGTTGAAAAGGCTGGTTCCCGAAAATCAAACCGGGGTGGAAGAGGAGGAAGAGGTGGACGTGGTGGATTTAGTAGTCGAGGTGGTGGCGGTGGCAGGGATAGGGGTGGTTACGGTGGTGGTTTTGGTAGTAGAGGACGGGGAAGGGATGATTACGGTGGAAGTAGTGGGTATGGTGGAAGAGGCGGTGGCAGGCCGACTAGAGGAGGGAGAGATGGATATGATGATGGATATGGGGGTGGTGGTTATGGTGGCGGAGGTGGTGGGTATGGTGGAGGAAGAGGAGGCAGGGGTGGGGACTGGGGTGGAAGTAGAGGAAGAGGCAGGGGCATGGGTTATGGTGGTAGTGGTTCCAGCAGTTACAATGGAAACAGAAATGGTGGGCGAGATAGCTATGGTGGAGGTGGTGGTGGTAGTGGTGGATATAGTAGGGGTTATGGTGGCGGCGGATATGGTGGTGGTGGCAGGAGTAGCTATGGCAGCCGTGGGTATTAAGAAGGCCAAACACATCCAGATTGAACAAGGGCAGACCAGTCCACATCAAATGTGCAGTGTGCAGAACAGTTATCGGCAGCCAACATCTGTTGTTTGAATCTCAATTTTCTTGTTTTGAAAAATTGAGTGCAatatatatatatatatatatatatTGCAAGCACCTCAACCATCTGCTTCAGCTGAACAAGAACCAGTCAGAAAAACGATGAGAACTGCAGAAACTGACGATGTATATAGCAAACAACTCATTTGTATAATTTTAAATCTTTGGGCATTTCTAAGTCGTTGGAAAGTACTTTTACTTGTATCATTGGATCACCAGTATTGTTCCAATATAAGTTGATCACATTCCGAACATACTTCAGACTATAATACAACACCGTAAAGTTCATGTTGGCCTTGAATAATATACAAAGTTCTCACAGGCATGCATTTGTCTAAACAGTATTGAGACAAGAGGCCTGCAGCGTAATATTGTTTTCAACTTTAACTGAAATCCGATTATAATATAAGGACGTGTCAAAAGTCTAGAATATGTCATTTGTTCATTAGGTCATGTGCATCAGCATTTTGGATGCTTAATGTAGGATATTAGAGCTGTGAGATATGTTTCTTTTGTGTGTGAGGAGAAAGTAGATCATAATAAAACCACAGCGCATTTCATCTTTTTACCGCTTGTCAAGAAATATATTTAAATGATAAAAGTTTTTGTCTTATCGTACCTGCCCTGTAAGCACCGAAAATGATTCTGTCAAACAAGCGCAATATCCTTTGGTACAACGATGCCTTTTACTATTTTACTATATATTAAAAAGAATTTGAAAAGCGCCGCTATTCCATATTCACCAGCGTTTTAACCTAATCAAAGTTATACAAAATGGATTCAGTAGTGGATTTTGTGCCTCTTCCGATGTATTGCTAAACTTTTAGCTTTACCGGTACCAAGTGCAACAGGTTGAACCAATTTCGTGGACTAATTGTACTACTGTCCCTAAAATTTTGGACAACCAACAGGTGTGGTTATTTTTCAAATGTACCCCGGTGATATGCACGGCAGTAGGGATTCTTTTGGTTTCTGGGCTTTTTTAGTTTAATGCTAAAAAACTATTATTGGAGACAATTGTACATTTTAGTTTGTTGGGCAAGTTAACCATAATGCCTGGGTCTCTGAACATTTCTTGCGCTTTTTTAACTAATGGGGAAAGCCAGTTACGATGGTGGGAATAATAACTGGGTGGTTTTCTCCATCGAAAGTCAATTTTACAAAGGTGGGAAATGGTTGTTGGAAGGGGACCGAGTATCGCTTCAAGTGAAAAATTGACTTACTCATAAGAGAGCTTGTTTTCGGAAGGAGGGCAATCAAAAGCAAGATTTTTGATCCTACCTACCTCTTACTGCTACTTAGTATTTAAACATCGAGTAGTGTGTGGTTACCGTATTTGTTCGTTAATTTGATTGGTTTGAAAAGTCCCAATATGTTTTTTTAAAAGAGTTGT

Protein

Uniprot

Uniprot term	Description
O89086	RNA-binding protein 3 OS=Mus musculus OX=10090 GN=Rbm3 PE=1 SV=1
Q925G0	RNA-binding protein 3 OS=Rattus norvegicus OX=10116 GN=Rbm3 PE=1 SV=2
W8E7I1	RNA-binding protein 3 OS=Capra hircus OX=9925 GN=RBM3 PE=2 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15241	TRANSFORMER-2-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan