Gene detail

Detailed information of scaffold327.g16.t2 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold327:253203...264384
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold327.g16.t2

cgaaatacaaggaatatcctgcttccggttcaagatttgttgagtcaaaccctcaggcttgaggttgaggtttcagatcgaagaaaatcgcagagaaaagaagggtgcactcagggcgatcctgagatttttaaccctcaagatgcggcttttagcgatatcgatgtttttatgttttcaaaatgttttatcacaagttttacagccgccatacttcgacattgcaaggggcaagaagatgacagccacttcaacgtgcggagagggcatcggctctgatggcaaagagcttttctgtaaactggcacaagcttcgggaaggattggaatcaaagggcagtactgtgattactgctatccagggaaccacagtatcaagtatgcgaatgatggaactgagagatggtggcagtcaccgtcgctttcaagaggccttcaatatgaagatgtcaacatcaccatagatttgggccaggtttaccatgttgcatacattatcatcaaagcagcgaactccccaagaccaggtgtatggtcactaatgagatcaaaagatggaggcagaactttcacaccatggtacaactttgcatctacaccaagcgaatgccttacataccacaagatgtcccatttgttgccaatcacaaaagacgacactgttcggtgcaaaatggaatactctcaagttccaccatttgaagatggagagattcatatttcacttgtaaatggcagacctggtgcatccaacttctccttcagtcctgccctacaggaatggacaacagcttcacacatcagactgcacttcatgaaagtgaaaacccttcttggagatctcatgcctctatccctacaagatcccactgttaccagaaggtattactattcaatcaaagaaatttcggttggtggcagatgcttgtgtaatggttttgcagacagatgtattcaagttgatggtgatccaacaaattacaaatgcgattgccaacataacgcttgtggtgcgaggtgtgatcaatgttgccctggatatgtgcagaagaaatggagaccaagatatggcaatgacaacttcgtttgtgaacgatgcaactgtcacggacacagcaacaaatgtgcctatgatgagcaagtagcccgaagaaaactcagcacagacataaatggaaagaaagaaggtggtggtgtttgtgatgactgtcaacacaatacttatggtattaattgtgagaagtgcaggccttattattacagacctgcaggagtgccaatcacgtcaagagatgcatgcaaaccttgcaactgcagcttccaaacatcaactggccagtgtgctgatggtgatggacaatgcaactgcaagtcaaactatgctggcaagaagtgtgatagatgcaacgttggctacttcaattatccactttgtgaagcatgcatttgtgacagagaaggttcggtgaaaggctcatgtgcaccagataatgctggaaattgtcaatgtaaaccaggatatactggaaagttctgcaatcgatgtgcttttggttactatggatatccaacttgtcagccatgcaactgcttgatccaatatggtgcattgaacaatgaatgtgaccgcaaatcaggccaatgtgattgtaaacctggctatggaagcagagcatgtgaccagtgtctcattggttatttcaacttcccgctttgcaaaacgaattataagcaatttaaagcaagttattttctgctaggaaaatgctgtttacatgacgaggattatttgagaactaaaggttaaaggtttcaagtgcctttgatttcctgttgaatggattttgcggttataataccaattatgtcattgtaaactctgcactaaatacatacaggattattctgtttacccttgtggccagattgaagttaatcattttcaacagtggaactgtacgctaagaaactgtttcagcgcttttctcaaaatcaatttttcagcaaccaatgggtattcatacagctccctgtacccaacggcttaatataattggctgagattt

Transcript

scaffold327.g16.t2

CGAAATACAAGGAATATCCTGCTTCCGGTTCAAGATTTGTTGAGTCAAACCCTCAGGCTTGAGGTTGAGGTTTCAGATCGAAGAAAATCGCAGAGAAAAGAAGGGTGCACTCAGGGCGATCCTGAGATTTTTAACCCTCAAGATGCGGCTTTTAGCGATATCGATGTTTTTATGTTTTCAAAATGTTTTATCACAAGTTTTACAGCCGCCATACTTCGACATTGCAAGGGGCAAGAAGATGACAGCCACTTCAACGTGCGGAGAGGGCATCGGCTCTGATGGCAAAGAGCTTTTCTGTAAACTGGCACAAGCTTCGGGAAGGATTGGAATCAAAGGGCAGTACTGTGATTACTGCTATCCAGGGAACCACAGTATCAAGTATGCGAATGATGGAACTGAGAGATGGTGGCAGTCACCGTCGCTTTCAAGAGGCCTTCAATATGAAGATGTCAACATCACCATAGATTTGGGCCAGGTTTACCATGTTGCATACATTATCATCAAAGCAGCGAACTCCCCAAGACCAGGTGTATGGTCACTAATGAGATCAAAAGATGGAGGCAGAACTTTCACACCATGGTACAACTTTGCATCTACACCAAGCGAATGCCTTACATACCACAAGATGTCCCATTTGTTGCCAATCACAAAAGACGACACTGTTCGGTGCAAAATGGAATACTCTCAAGTTCCACCATTTGAAGATGGAGAGATTCATATTTCACTTGTAAATGGCAGACCTGGTGCATCCAACTTCTCCTTCAGTCCTGCCCTACAGGAATGGACAACAGCTTCACACATCAGACTGCACTTCATGAAAGTGAAAACCCTTCTTGGAGATCTCATGCCTCTATCCCTACAAGATCCCACTGTTACCAGAAGGTATTACTATTCAATCAAAGAAATTTCGGTTGGTGGCAGATGCTTGTGTAATGGTTTTGCAGACAGATGTATTCAAGTTGATGGTGATCCAACAAATTACAAATGCGATTGCCAACATAACGCTTGTGGTGCGAGGTGTGATCAATGTTGCCCTGGATATGTGCAGAAGAAATGGAGACCAAGATATGGCAATGACAACTTCGTTTGTGAACGATGCAACTGTCACGGACACAGCAACAAATGTGCCTATGATGAGCAAGTAGCCCGAAGAAAACTCAGCACAGACATAAATGGAAAGAAAGAAGGTGGTGGTGTTTGTGATGACTGTCAACACAATACTTATGGTATTAATTGTGAGAAGTGCAGGCCTTATTATTACAGACCTGCAGGAGTGCCAATCACGTCAAGAGATGCATGCAAACCTTGCAACTGCAGCTTCCAAACATCAACTGGCCAGTGTGCTGATGGTGATGGACAATGCAACTGCAAGTCAAACTATGCTGGCAAGAAGTGTGATAGATGCAACGTTGGCTACTTCAATTATCCACTTTGTGAAGCATGCATTTGTGACAGAGAAGGTTCGGTGAAAGGCTCATGTGCACCAGATAATGCTGGAAATTGTCAATGTAAACCAGGATATACTGGAAAGTTCTGCAATCGATGTGCTTTTGGTTACTATGGATATCCAACTTGTCAGCCATGCAACTGCTTGATCCAATATGGTGCATTGAACAATGAATGTGACCGCAAATCAGGCCAATGTGATTGTAAACCTGGCTATGGAAGCAGAGCATGTGACCAGTGTCTCATTGGTTATTTCAACTTCCCGCTTTGCAAAAcgaattataagcaatttaaagcaagttattttctgctaggaaaatgctgtttacatgacgaggattatttgagaactaaaggttaaaggtttcaagtgcctttgatttcctgttgaatggattttgcggttataataccaattatgtcattgtaaactctgcactaaatacatacaggattattctgtttacccttgtggccagattgaagttaatcattttcaacagtggaactgtacgctaagaaactgtttcagcgcttttctcaaaatcaatttttcagcaaccaatgggtattcatacagctccctgtacccaacggcttaatataattggctgagattt

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00055 all species →	Laminin_N	Laminin N-terminal (Domain VI)	Domain	Interproscan
PF00053 all species →	Laminin_EGF	Laminin EGF domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002049 all species →	Domain	Laminin-type EGF domain	Interproscan
IPR008211 all species →	Domain	Laminin, N-terminal	Interproscan
IPR050440 all species →	Family	Laminin/Netrin Extracellular Matrix	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10574 all species →	NETRIN/LAMININ-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005604 all species →	Cellular Component	basement membrane	Interproscan
GO:0009887 all species →	Biological Process	animal organ morphogenesis	Interproscan
GO:0009888 all species →	Biological Process	tissue development	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold327.g16.t2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.