Gene detail

Detailed information of scaffold33.g24.t3 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold33:265534...278844
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold33.g24.t3

acaccctcccccggggggggtacttcattgttaagttgtactggacgtgccgctcatatggatgggttttttcatccgaaattctctacatatgggtctgtttttaaccacaattctggtagatgggtacttctttgagaattttcttatcaatcggccccataatgataatccaggccaaaaaactgaaattttcctttgtttcaaatcgacaaattcatgcacatgggtcaaagatttcctgatattcatgcaaatgggctcgaagtgaaaacccaactgattaattcagtggagcagtggaccacaaaacttggaatttaatcagatttttatttgcaacgctttcaatgctcatgtcaaggctaaagcaataggttccaaatatttaaaaaggctggtgtaagatttaatgaccacaaagcatgacgggaataacgaacttcgtcaccggaatcgccgcagcatattgggcacattcgccagtcgttgcaatcacgccggaagcgggaaccgcgacaaaaggtcttggtggatttcaagaagcggatcaactcccaatattcagcgctgttacgaaatatcaaggacacgtcaacaatccaaatcgcatggcagaaatcaccgcgcggacattcgatattgcgatgaatgaacgtggacctacgcaactaaatattccgcgcgatttcttctatcatgaagctgactacaagattccttctccagttcgggtggaaaaatccgcaggtggaccgaactcattagcagctgcagcggaattgatccgcacggcaaaaaatccggtgattttagcaggaggtggtgttgtaatgggtgaagcggtgaacgaagttgccgcacttgcagaatacctttccgctccggtttgcacgacgtatctccataacgatgcatttccagccaatcatgggctctggtgtggcccactcggttacctaggacaccaaactgcgatgaaaaccattaacgaggctgacttggttattgcacttggaacgaggctaagcccgtttggtacgctcgcccagtacggatttgattattggcccaagaatgctaaaattgtgcaggtcgaagctgatccaaggcgcataggcctcgtcaaatcagttgatgtcggaataaatggtgattgcaaattagcaactaaagatctactgtctcgtttacgatcaatgtctgacgtcacggctttgtcaaatgtggaagagaggctgcagaagctgggacagattcgagaaggctgggagaatcaacttgatgacatgactgaaaccgtggagcgcgcaagagatgggaaaattgtaccaagacaggcactgagggagttagaaagagccatgcctagtaatgctatggtatctactgatatcggcaatgtgtgttcagtttctaacggatatcttcgatttaacagctctccaagtttctttgctgcgatgacatttggtaactgcggatactccttcccatcggcaatgggtgccaaaattgcaagacccgataggccagcaattgcatacgttggtgacggagcatggggaatgagttttaatgaagttctaacttgtgttcgagaacagatccctacaacggcggttgtgtttaacaatgggcaatggggtgcagagaaaaagaaccagatccctacaacggcggttgtgtttatcaatgggcaatggggtgcagagaaaaagaaccaggtattatggttcggtgatcgttatattggcgtgcaactcagtaacccctggagttatgcagaaatagcacgaagcatgaaggccgaaggaatcacgtgcacacatcgtgatcagataggggatgccttgagacaagcagtcaggaatcaagaagaggggaagaccactgtcctcgaattgatgttcactcgggagctaggagatccattcagacgtgacgcaatgaaattacccatcagacatttggagaaatacaaaagaacgatccagactttggaatctgcaaccggacaaccttcggacatctaaagcactaggactgcctgatcggacagtagggttatctgccttcctgtaactttgttttcatactgctgaggaaatatcatggtagtttttgatataatttttaagcattgtttcgttgtacgcagcataggttccaaatctttaaagggtctctttcatccagcatgccttccacatgccgtctcttggttgtcccttgatttgaagcctattatctttgcttacgaaagtttgactttattccaaaaacgaaatttgaacaatcgatcctttctgacaaatgatggaacatcaaattcgatcgcagttgtttagacttcaaaacttaccaggttgaaccactcgttccaaatctcatatctgcaaaaagaaaagtttcatgtttaaaggtttttgatcaaccgtcatgcattgcagccctatttgtcaaagtggtctaatgtcatgtcaaaggtatatttctgttagcgtttccctcggctagccattgtgtttcgttcaccattttactatccagcatttcagctgtttgattatttatactttaattgatcgatcattaacttaattaattgattattactattcaaggggagacaatagaccttttgctactctgcataagtgcctggatcaagtgataatttgatacattttcataagagaggttcgattgaatggcgttggaacttctatcactcttgtacacattcgaaaattctacaaaatgtataaaatatcgttcgattcaggttcttttttagaatactgaaaggtctatcgcagtagtagctgttgcagccttgcagccattctaggttttatatatagattcaggggcttgtagagaacagattttcgtaataataagatatatttcac

Transcript

scaffold33.g24.t3

ACACCCTCCCCCggggggggtacttcattgttaagttgtactggacgtgccgctcatatggatgggttttttcatccgaaattctctacatatgggtctgtttttaaccacaattctggtagatgggtacttctttgagaattttcttatcaatcggccccataatgataatccaggccaaaaaactgaaattttcctttgtttcaaatcgacaaattcatgcacatgggtcaaagatttcctgatattcatgcaaatgggctcgaagtGAAAACCCAACTGATTAATTCAGTGGAGCAGTGGACCACAAAACTTGGAATTTAATCAGATTTTTATTTGCAACGCTTTCAATGCTCATGTCAAGGctaaagcaataggttccaaatatttaaaaaggctggtgtaagatttaatgaccACAAAGCATGACGGGAATAACGAACTTCGTCACCGGAATCGCCGCAGCATATTGGGCACATTCGCCAGTCGTTGCAATCACGCCGGAAGCGGGAACCGCGACAAAAGGTCTTGGTGGATTTCAAGAAGCGGATCAACTCCCAATATTCAGCGCTGTTACGAAATATCAAGGACACGTCAACAATCCAAATCGCATGGCAGAAATCACCGCGCGGACATTCGATATTGCGATGAATGAACGTGGACCTACGCAACTAAATATTCCGCGCGATTTCTTCTATCATGAAGCTGACTACAAGATTCCTTCTCCAGTTCGGGTGGAAAAATCCGCAGGTGGACCGAACTCATTAGCAGCTGCAGCGGAATTGATCCGCACGGCAAAAAATCCGGTGATTTTAGCAGGAGGTGGTGTTGTAATGGGTGAAGCGGTGAACGAAGTTGCCGCACTTGCAGAATACCTTTCCGCTCCGGTTTGCACGACGTATCTCCATAACGATGCATTTCCAGCCAATCATGGGCTCTGGTGTGGCCCACTCGGTTACCTAGGACACCAAACTGCGATGAAAACCATTAACGAGGCTGACTTGGTTATTGCACTTGGAACGAGGCTAAGCCCGTTTGGTACGCTCGCCCAGTACGGATTTGATTATTGGCCCAAGAATGCTAAAATTGTGCAGGTCGAAGCTGATCCAAGGCGCATAGGCCTCGTCAAATCAGTTGATGTCGGAATAAATGGTGATTGCAAATTAGCAACTAAAGATCTACTGTCTCGTTTACGATCAATGTCTGACGTCACGGCTTTGTCAAATGTGGAAGAGAGGCTGCAGAAGCTGGGACAGATTCGAGAAGGCTGGGAGAATCAACTTGATGACATGACTGAAACCGTGGAGCGCGCAAGAGATGGGAAAATTGTACCAAGACAGGCACTGAGGGAGTTAGAAAGAGCCATGCCTAGTAATGCTATGGTATCTACTGATATCGGCAATGTGTGTTCAGTTTCTAACGGATATCTTCGATTTAACAGCTCTCCAAGTTTCTTTGCTGCGATGACATTTGGTAACTGCGGATACTCCTTCCCATCGGCAATGGGTGCCAAAATTGCAAGACCCGATAGGCCAGCAATTGCATACGTTGGTGACGGAGCATGGGGAATGAGTTTTAATGAAGTTCTAACTTGTGTTCGAGAACAGATCCCTACAACGGCGGTTGTGTTTAACAATGGGCAATGGGGTGCAGAGAAAAAGAACCAGATCCCTACAACGGCGGTTGTGTTTATCAATGGGCAATGGGGTGCAGAGAAAAAGAACCAGGTATTATGGTTCGGTGATCGTTATATTGGCGTGCAACTCAGTAACCCCTGGAGTTATGCAGAAATAGCACGAAGCATGAAGGCCGAAGGAATCACGTGCACACATCGTGATCAGATAGGGGATGCCTTGAGACAAGCAGTCAGGAATCAAGAAGAGGGGAAGACCACTGTCCTCGAATTGATGTTCACTCGGGAGCTAGGAGATCCATTCAGACGTGACGCAATGAAATTACCCATCAGACATTTGGAGAAATACAAAAGAACGATCCAGACTTTGGAATCTGCAACCGGACAACCTTCGGACATCTAAAGCACTAGGACTGCCTGATCGGACAGTAGGGTTATCTGCCTTCCTGTAACTTTGTTTTCATACTGCTGAGGAAATATCATGGTAGTTTTTGATATAATTTTTAAGCATTGTTTCGTTGTacgcagcataggttccaaatctttaaagggtctctttcatccagcatgccttccacatgccgtctcttggttgtcccttgatttgaagcctatTATCTTTGCTTACGAAAGTTTGACTTTATTCCAAAAACGAAATTTGAACAATCGATCCTTTCTGACAAATGATGGAACATCAAATTCGATCGCAGTTGTTTAGACTTCAAAACTTACCAGGTTGAACCACTCGTTCCAAATCTCATATCTGCAAAAAGAAAAGTTTCATGTTTAAAGGTTTTTGATCAACCGTCATGCATTGCAGCCCTATTTGTCAAAGTGGTCTAATGTCATGTCAAAGGTATATTTCTGTTAGCGTTTCCCTCGGCTAGCCATTGTGTTTCGTTCACCATTTTACTATCCAGCATTTCAGCTGTTTGATTATTTATACTttaattgatcgatcattaacttaattaattgattattaCTATTCAAGGGGAGACaatagaccttttgctactctgcataagtgcctggatcaagtgataatttgatacattttcataagagaggttcgattgaatggcgttggaacttctatcactcttgtacacattcgaaaattctacaaaatgtataaaatatcgttcgattcaggttcttttttagaatactgaaaggtctatCGCAGTAGTAGCTGTTGCAGCCTTGCAGCCATTCTAGGTTTTATATATAGATTCAGGGGCTTGTAGAGAACAGATTTTCGTAATAATAAGATATATTTCAC

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02775 all species →	TPP_enzyme_C	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain	Domain	Interproscan
PF00205 all species →	TPP_enzyme_M	Thiamine pyrophosphate enzyme, central domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011766 all species →	Domain	Thiamine pyrophosphate enzyme, TPP-binding	Interproscan
IPR029035 all species →	Homologous_superfamily	DHS-like NAD/FAD-binding domain superfamily	Interproscan
IPR029061 all species →	Homologous_superfamily	Thiamin diphosphate-binding fold	Interproscan
IPR012000 all species →	Domain	Thiamine pyrophosphate enzyme, central domain	Interproscan
IPR045229 all species →	Family	Thiamine pyrophosphate enzyme	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18968 all species →	THIAMINE PYROPHOSPHATE ENZYMES	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0030976 all species →	Molecular Function	thiamine pyrophosphate binding	Interproscan
GO:0000287 all species →	Molecular Function	magnesium ion binding	Interproscan
GO:0003984 all species →	Molecular Function	acetolactate synthase activity	Interproscan
GO:0005948 all species →	Cellular Component	acetolactate synthase complex	Interproscan
GO:0009097 all species →	Biological Process	isoleucine biosynthetic process	Interproscan
GO:0009099 all species →	Biological Process	L-valine biosynthetic process	Interproscan
GO:0050660 all species →	Molecular Function	flavin adenine dinucleotide binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01652	E2.2.1.6L, ilvB, ilvG, ilvI; acetolactate synthase I/II/III large subunit	EC:2.2.1.6	Pantothenate and CoA biosynthesis	ko00770	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.