Genomic Location: scaffold331:229111...269884
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families
| CDS |
| scaffold331.g14.t2 |
| Transcript |
| scaffold331.g14.t2 |
| Protein |
| scaffold331.g14.t2 |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF02786 all species → | CPSase_L_D2 | Carbamoyl-phosphate synthase L chain, ATP binding domain | Domain | Interproscan |
| PF00988 all species → | CPSase_sm_chain | Carbamoyl-phosphate synthase small chain, CPSase domain | Domain | Interproscan |
| PF00117 all species → | GATase | Glutamine amidotransferase class-I | Domain | Interproscan |
| PF02787 all species → | CPSase_L_D3 | Carbamoyl-phosphate synthetase large chain, oligomerisation domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR036897 all species → | Homologous_superfamily | Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily | Interproscan |
| IPR036480 all species → | Homologous_superfamily | Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily | Interproscan |
| IPR002474 all species → | Domain | Carbamoyl-phosphate synthase small subunit, N-terminal domain | Interproscan |
| IPR005479 all species → | Domain | Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain | Interproscan |
| IPR016185 all species → | Homologous_superfamily | Pre-ATP-grasp domain superfamily | Interproscan |
| IPR005480 all species → | Domain | Carbamoyl-phosphate synthetase, large subunit oligomerisation domain | Interproscan |
| IPR029062 all species → | Homologous_superfamily | Class I glutamine amidotransferase-like | Interproscan |
| IPR005483 all species → | Domain | Carbamoyl-phosphate synthase large subunit, CPSase domain | Interproscan |
| IPR017926 all species → | Domain | Glutamine amidotransferase | Interproscan |
| IPR011761 all species → | Domain | ATP-grasp fold | Interproscan |
| IPR035686 all species → | Domain | Carbamoyl-phosphate synthase small subunit, GATase1 domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11405 all species → | CARBAMOYLTRANSFERASE FAMILY MEMBER | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
| GO:0004088 all species → | Molecular Function | carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
| GO:0006541 all species → | Biological Process | glutamine metabolic process | Interproscan |
| GO:0006807 all species → | Biological Process | obsolete nitrogen compound metabolic process | Interproscan |
| GO:0046872 all species → | Molecular Function | metal ion binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K05349 | bglX; beta-glucosidase | EC:3.2.1.21 | Biosynthesis of various plant secondary metabolites | ko00999 | deepkoala |
Transcript abundance of scaffold331.g14.t2 across 29 RNA-seq samples of Aurelia aurita complex sp. Pacific. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| jellyfish mesoglea cells | 2 | 0 | 0.00 | 0.00 | |
| complete polyp induced 20h | 1 | 0 | 0.00 | 0.00 | |
| jellyfish canal system endoderm | 1 | 0 | 0.00 | 0.00 | |
| mesoglea cells | 1 | 0 | 0.00 | 0.00 | |
| bell edge (ectoderm and canal) | 1 | 0 | 0.00 | 0.00 | |
| tentacles (distal part) | 1 | 0 | 0.00 | 0.00 | |
| planula complete | 1 | 0 | 0.00 | 0.00 | |
| male gonad | 1 | 0 | 0.00 | 0.00 | |
| jellyfish ectoderm (upper bell surface) | 1 | 0 | 0.00 | 0.00 | |
| jellyfish ectoderm (muscle layer) | 1 | 0 | 0.00 | 0.00 | |
| complete juvenile jellyfish ~1cm in diameter | 1 | 0 | 0.00 | 0.00 | |
| strobila foot | 1 | 0 | 0.00 | 0.00 | |
| jellyfish ectoderm from the upper side of the bell | 1 | 0 | 0.00 | 0.00 | |
| complete juvenile jellyfish ~2.5cm in diameter | 1 | 0 | 0.00 | 0.00 | |
| jellyfish striated muscle layer | 1 | 0 | 0.00 | 0.00 | |
| strobila head | 1 | 0 | 0.00 | 0.00 | |
| jellyfish gastric filaments | 1 | 0 | 0.00 | 0.00 | |
| jellyfish bell edge | 1 | 0 | 0.00 | 0.00 | |
| jellyfish oral arm | 1 | 0 | 0.00 | 0.00 | |
| jellyfish bell middle part | 1 | 0 | 0.00 | 0.00 | |
| polyp ectoderm from body column | 1 | 0 | 0.00 | 0.00 | |
| polyp head region | 1 | 0 | 0.00 | 0.00 | |
| polyp endoderm from body column | 1 | 0 | 0.00 | 0.00 | |
| strobila non-segmented part | 1 | 0 | 0.00 | 0.00 | |
| strobila segments | 1 | 0 | 0.00 | 0.00 | |
| complete polyp induced 12h | 1 | 0 | 0.00 | 0.00 | |
| complete polyp not induced | 1 | 0 | 0.00 | 0.00 | |
| endoderm (canal system) | 1 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (AAURI2_TPM,
StringTie quantification over 29 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
