Gene detail

Detailed information of scaffold335.g4.t1 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold335:55757...72834
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold335.g4.t1

agctcggacaagagagtcagttcatgatatgatttttgaaggatcatatcaataagcattgacaaatttactttagttcctggtgggaactgctgtgtgtttgccatgatgagatgttatcaactgcgccaaaattcnctttcaatgacacctctggagggaccattaagtctttttctatatatttactgctaaaggttttggagttagaagttgatttcaaggaaggggagaggttgttacgattcgtatcgcgttcgtttccccactttctattagctttgaatactttatagccatatctttgtctggtctcgtaataaaaataagataacatcaatttcttattatcaatcgaataagaaatattgtgaagtggtcagtggcattaggactgaaggctcctttagtttgattagatcaatgctgctgtactgtgcttgtatgtaacattcagctaggaagctcgaaacgtgttcaagtttaggcctaacaaacacatcacatcagaatgctgcatggagatgttgtatacttttgataaaaaggtaatagaatactcacagctcggacaagagagtcagttcatgatatgatttttgaaggatcatatcaataagcattgacaaatttactttagttcctggtgggaactgctgtgtgtttgccatgatgagatgttatcaactgcgccaaaattcacgtaggcctacgcgcagcagccatctttgcttctgcttgttcactttcacaccactgatctgtgttgtgtttcacactaactacttcagtctctagttctgcttcgttcgtacttcatgtatgccaaatagtcacaatttcgagatttgggacggtgtggtgattgtagttagacgaaaatgcgcaagaatgggatgaatagtgatggcccgggggggggggatacttcacatattttgggtacggggtacggggaagtgccatcgggaagggtatcgattttcacgattttggtataaggaacggtatcgattctcacgtttttgatataagtataagatcagttacgcattgtgtagccattataaatatgaggtttttcacgtctttgggcagttaaacgtcgaaagccgaaagtcgaagttaaagtccagagtagcaagttagttgccgaaaagccgtgtcgtcgttattgatttgaagtgtcaaaggctgtatacagacgcatcttcgcttcgctggttctcttttgggccgttttctacacagttgggattgaagtgtaaaactctggttcatatctcaataatctgcaaatatggctatgtctggagtgaaaatggcaccagaagccactgtgtcatatgagagtttcaaaaagaaaggcagtggtgtggcgtttttgattttcgacgtcgttaaaagtaacatagtggtgaaagaagaagtaagagaagagcaagtgccagaacttcttgctcaagctaaagaagaagggttttctcagacaaccacagaaccagaccattatgcattgctgcgagcaatgctattgaagagtgacccatgttatgccactatcttgctggattgcaagaaagatggaggaatggaaacaaagatgacatatatcatgtggaacaaagaggacgcatcagtcaaaaagaagatgttgatagcttccagtaaagatgcaattgcaaagaaacttcagggcttgaagataaagattcaagcaaatgatgagtcagaaattgcttatgagaacgtggttgggtgagaagacattggagttatattaccaatctgactttaactctttgtcatctttcattttcttcttcccatgtgacagcgcttctttttctctctgtgtgaggttaaaagagctctttgattgataaactattttgcttaaaatattttttgttggacagtgactccagtacataccatcagatttattcatatgaattagagtaatccaagtacagaatgtcccagtaaaattacccccagtttgcgtggatggtgtggacaagctgtaactttgattgtggtattggttatcttcaagaggacacttttaacagtttgccaaagaaaaaaatcttaaaagaatgctcgaaccctgcctctaaagaatgttctcaattttaccatggcttaaaataatatcaacctaattctccattttggagcagtcacaatttacacgatttaaaatctggaactgaaacaggaaggcaggcattgtagttgttggtgttttgcttaagaagacagaaatgaatggctgtttttgaagcaaccgctaattttgccatcctgtgtcgtaaatcagcaactacttatcagattgattcaaacaaggtctcaaactctaagttaaagtctgccctatgcaccgtgtaaaatgtgtaactgtgtaagtagcagctcttccacagcagccacacaaatgatgcactgtttttgggacacaatgtatattttgcattctctgtcacttagaatttggcaatgaaaacttggtgcattttttgattggctagttaataatcaaatgaacctatttatgctgggtgagcgagttaaaagaggattttatacagagggcataatactttgcatatgatatacagcataggactcaaatttttcaaatctttaaaaaagtttgtttaaattgttttgcattttcttttaattaattgcttgaaaggaaccatggctactttcctgtaaatctgcccaggaaattttttatcttgattattttcaaaatggcagtgttctagttttgttgaaagagttcatttacaattttgaaaaaatttaaatcatcgtaaatcctaaacaaatggaaaaaatgataccatctgcaagagaaccatagtttatcaaggtctacaatatggtgccaagcaataatctgtcgctcttctggtttcggatttagaaagaagttgatgatgtcatgcattcacatatagtaaattccaccatctcgaaactagctaagatatcaagagatttccacagccgatttacggcaaagtacaataaatttcttttaagccatttaattaaaagaaatcgtgtaatagaattttatacctacctttttaaagatttgagccctacgctatacagttgtggccaaagtttaagaatttgttggtgcaatgaggtactgcttcacctatttcactctctttgagttgtttccggtcaagtgttgatatagattccaaattttgatgttgttttgaaattttgtgccattttgctgtgaggtgatgatgaaatatagtcttgcttctcaaaaaaattaagggatgaaataccaacccaaaatgataacaaaattattgcaatttttagaccaaaaagtaagctgtgtctccctgtgccaattttttttcttgcacccagggtacccaactcacccagtatattactaaatcatctcctgtctttagatagtgaccagactgactttgaacaagcacagactttgcttttgtttattatgtaattctgtaagctggggcgaaatgggcgagagtgggtcatttaaaacttcatagcttaaagtgc

Transcript

scaffold335.g4.t1

AGCTCGGACAAGAGAGTCAGTTCATGATATGATTTTTGAAGGATCATATCAATAAGCATTGACAAATTTACTTTAGTTCCTGGTGGGAACTGCTGTGTGTTTGCCATGATGAGATGTTATCAACTGCGCCAAAATTCNCTTTCAATGACACCTCTGGAGGGACCATTAAGTCTTTTTCTATATATTTACTGCTAAAGGTTTTGGAGTTAGAAGTTGATTTCAAGGAAGGGGAGAGGTTGTTACGATTCGTATCGCGTTCGTTTCCCCACTTTCTATTAGCTTTGAATACTTTATAGCCATATCTTTGTCTGGTCTCGTAATAAAAATAAGATAACATCAATTTCTTATTATCAATCGAATAAGAAATATTGTGAAGTGGTCAGTGGCATTAGGACTGAAGGCTCCTTTAGTTTGATTAGATCAATGCTGCTGTACTGTGCTTGTATGTAACATTCAGCTAGGAAGCTCGAAACGTGTTCAAGTTTAGGCCTAACAAACACATCACATCAGAATGCTGCATGGAGATGTTGTATACTTTTGATAAAAAGGTAATAGAATACTCACAGCTCGGACAAGAGAGTCAGTTCATGATATGATTTTTGAAGGATCATATCAATAAGCATTGACAAATTTACTTTAGTTCCTGGTGGGAACTGCTGTGTGTTTGCCATGATGAGATGTTATCAACTGCGCCAAAATTCACGTAGGCCTACGCGCAGCAGCCATCTTTGCTTCTGCTTGTTCACTTTCACACCACTGATCTGTGTTGTGTTTCACACTAACTACTTCAGTCTCTAGTTCTGCTTCGTTCGTACTTCATGTATGCCAAATAGTCACAATTTCGAGATTTGGGACGGTGTGGTGATTGTAGTTAGACGAAAATGCGCAAGAATGGGATGAATAGTGATGGCCCGGgggggggggatacttcacatattttgggtacggggtacggggaagtgccatcgggaagggtatcgattttcacgattTTGGTATAAGGAACGGTATCGATTCTCACGTTTTTGATATAAGTATAAGATCAGTTACGCATTGTGTAGCCATTATAAATATGAGGTTTTTCACGTCTTTGGGCAGTTAaacgtcgaaagccgaaagtcgaagttaaagtccagagtagcaagtTAGTTGCCGAAAAGCCGTGTCGTCGTTATTGATTTGAAGTGTCAAAGGCTGTATACAGACGCATCTTCGCTTCGCTGGTTCTCTTTTGGGCCGTTTTCTACACAGTTGGGATTGAAGTGTAAAACTCTGGTTCATATCTCAATAATCTGCAAATATGGCTATGTCTGGAGTGAAAATGGCACCAGAAGCCACTGTGTCATATGAGAGTTTCAAAAAGAAAGGCAGTGGTGTGGCGTTTTTGATTTTCGACGTCGTTAAAAGTAACATAGTGGTGAAAGAAGAAGTAAGAGAAGAGCAAGTGCCAGAACTTCTTGCTCAAGCTAAAGAAGAAGGGTTTTCTCAGACAACCACAGAACCAGACCATTATGCATTGCTGCGAGCAATGCTATTGAAGAGTGACCCATGTTATGCCACTATCTTGCTGGATTGCAAGAAAGATGGAGGAATGGAAACAAAGATGACATATATCATGTGGAACAAAGAGGACGCATCAGTCAAAAAGAAGATGTTGATAGCTTCCAGTAAAGATGCAATTGCAAAGAAACTTCAGGGCTTGAAGATAAAGATTCAAGCAAATGATGAGTCAGAAATTGCTTATGAGAACGTGGTTGGGTGAGAAGACATTGGAGTTATATTACCAATCTGACTTTAACTCTTTGTCATCTTTCATTTTCTTCTTCCCATGTGACAGCGCTTCTTTTTCTCTCTGTGTGAGGTTAAAAGAGCTCTTTGATTGATAAACTATTTTGCTTAAAATATTTTTTGTTGGACAGTGACTCCAGTACATACCATCAGATTTATTCATATGAATTAGAGTAATCCAAGTACAGAATGTCCCAGTAAAATTACCCCCAGTTTGCGTGGATGGTGTGGACAAGCTGTAACTTTGATTGTGGTATTGGTTATCTTCAAGAGGACACTTTTAACAGTTTGCCAAAGAAAAAAATCTTAAAAGAATGCTCGAACCCTGCCTCTAAAGAATGTTCTCAATTTTACCATGGCTTAAAATAATATCAACCTAATTCTCCATTTTGGAGCAGTCACAATTTACACGATTTAAAATCTGGAACTGAAACAGGAAGGCAGGCATTGTAGTTGTTGGTGTTttgcttaagaagacagaaatgaatggctgtttttgaagcaaccgctaattttgccatcctgtgtcgtaaatcagcaactacttatcagattgattcaaacaaggtctcaaactctaagttaaagtctgccctatgcaccgtgtaaaatgtgtaactgtgtaagtagcagctcttccacagcagccacacaaatgatgcactgtttttgggacacaatgtaTATTTTGCATTCTCTGTCACTTAGAATTTGGCAATGAAAACTTGGTGCATTTTTTGATTGGCTAGTTAATAATCAAATGAACCTATTTATGCTGGGTGAGCGAGTTAAAAGAGGATTTTATACAGAGGGCATAATACTTTGCATATGATATACagcataggactcaaatttttcaaatctttaaaaaagtttgtttaaattgttttgcattttcttttaattaattgcttgaaaggaaccatggctactttcctgtaaatctgcccaggaaattttttatcttgattattttcaaaatggcagtgttctagttttgttgaaagagttcatttacaattttgaaaaaatttaaatcatcgtaaatcctaaacaaatggaaaaaatgataccatctgcaagagaaccatagtttatcaaggtctacaatatggtgccaagcaataatctgtcgctcttctggtttcggatttagaaagaagttgatgatgtcatgcattcacatatagtaaattccaccatctcgaaactagctaagatatcaagagatttccacagccgatttacggcaaagtacaataaatttcttttaagccatttaattaaaagaaatcgtgtaatagaattttatacctacctttttaaagatttgagccctacgctATACAGTTGTGGCCAAAGTTTAAGAATTTGTTGGTGCAATGAGGTACTGCTTCACCTATTTCACTCTCTTTGAGTTGTTTCCGGTCAAGTGTTGATATAGATTCCAAATTTTGATGTTGTTTTGAAATTTTGTGCCATTTTGCTGTGAGGTGATGATGAAATATAGTCTTGCTTCTCAAAAAAATTAAGGGATGAAATACCAACCCAAAATGATAACAAAATTATTGCAATTTTTAGACCAAAAAGTAAGCTGTGTCTCCCTGTGCCAATTTTTTTTCTTGCACCCAGGGTACCCAACTCACCCAGTATATTACTAAATCATCTCCTGTCTTTAGATAGTGACCAGACTGACTTTGAACAAGCACAGACTTTGCTTTTGTTTATTATGTAATTCTGTAAGCTGGGGCGAAATGGGCGAGAGTGGGTCATTTAAAACTTCATAGCTTAAAGTGC

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00241 all species →	Cofilin_ADF	Cofilin/tropomyosin-type actin-binding protein	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002108 all species →	Domain	Actin-depolymerising factor homology domain	Interproscan
IPR029006 all species →	Homologous_superfamily	ADF-H/Gelsolin-like domain superfamily	Interproscan
IPR017904 all species →	Family	ADF/Cofilin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11913 all species →	COFILIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003779 all species →	Molecular Function	actin binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0015629 all species →	Cellular Component	actin cytoskeleton	Interproscan
GO:0030042 all species →	Biological Process	actin filament depolymerization	Interproscan
GO:0030479 all species →	Cellular Component	actin cortical patch	Interproscan
GO:0051014 all species →	Biological Process	actin filament severing	Interproscan
GO:0051015 all species →	Molecular Function	actin filament binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05765	CFL; cofilin	-	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.