Gene detail

Detailed information of scaffold340.g2.t1 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold340:30349...69544
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold340.g2.t1

tttaatttatttggaacttgcagtttgaagcttcctgctactatttctaaaccaacattcccacaagaagaagtaaaaaacgccaattcaacactacttttccgactactgtttgctgcgaatgtctcccaatgtgcccaatgtgcccaatgttgaatgtcgaatatccaactgacaatcgcgatccggattggagagatgatatgatatttgatgatgatgatataataggataccttcccttgtttgttagtttggaaggattggagttgcacaatcaatttgcataaaacaacattaccttcaggatctctttttcttcgagcggacatctttatcgtttgtatgaattatttctggatattttcctgcactgcactaagcaagcacttgcactgagcttcttccttatattaaattaggccagtcgatttcccgccttcctgaatcgtacaatcacgtgacaagaattactccaacctcgttttcaaggtgccctcggaaaattttttgtcatcaaaggcaaaggcatttagactagctacactagtccctcgatttcgctgttgctgatggccagctcaatgagggactagttgccagagagtgtctcaaatcggaattttcagaacgaaaaacctgattgtaatctgattggagcatttcggctaaaacaatagaaaatttttttgtagccaatcaacttttcctctctttacttatttgtactggagacctgaagagcagaagcaaatgaagctgaaggaatttagctagccacttggcatgatgaaatgggcactgggaagagatatttgtttgtgctctaacaggaaatggcaaaatgtaatgctgttgtgatacttgagaggcattttcaagacagcagtgagtgtcagtctgtcagtacactgcagtgtagtgtaggcctaggcctactctaagttcaggtttgattgagtggcgcggcgttagaggttctatcggttctatcactgatgttgacattctgcaatacatatatcattcgatctgtgagacgttctatttggtttattcatcattcgatttttcgatcgcatactagtgatcattagtaatcacgggtatgcccgataatgcattttctcgtgtattttgactgtgacattgctctttattcataacggaaatttatggttatatgctgaagaaattgctctcgagatttgactacactgaaggattgaaagaatttacaaggatcagaatgatttatctatcatctttgccaataatcttagccatctgtcaacatgcattgccattggagagtgcctctgttaacatatctgtgtctcatagaaatattacagttaatggaagcttggaagttaatttgcttggtgtagatcccattagcaaatcaagcaccctttcatgttccactgttacgggcggtggtgctagatatgacattgtttattataatttcttcctgaatacgttggtgttggagaatcccaagcctgcagagtatgatggaagagtacagataacaagcaatcgacagtttacagtatccccaatcaaattcattgacgagaaacttggcgttcaatgcaagatgacgtattttaataaagtggggacacgttttactgtgcaaagcaacagcattatcatagaaaatgtgtatgcctttccagtcatcagtggaaaccatattcaaggatcatttactgccataaaaggaacaccaacagaagtgacgtgcagtgtaagaagcaggccagcctctactatcacatggtcagctgaaactggagtgattggtatcccagaaacaccaactgtgcaacaagatgggttctattacatcacaaaaggaagatacaacttgtctaacccagtttatgcgatggatggaaagaaaatcaattgtactggtataccggttttcggatcagctgtaaccatagttactacattgaatgtcttatatcgtccagaaaataccacattcacagttactccctccaagctagtcttgaatacaacaatcaagttaacttgcgcagcaaagggactaccgagcgtcagaaattatggactctatgtcaatggaaagttgattgggaatcaatctgacgggaacctgactgtcaacttgtctccgtctaattgcgtcaagtactttggagaatacaagtgtgtacctgaaagcattattggagaaggagagagtaaaacaacaacgagagaatttgaatttgaatatcgtccagaaaataccacattcacagttactccctccaagctagtcttgaatacaacaatcaagttaacttgcgcagcaaagggactaccgagcgtcagaaattatggactctatgtcaatggaaagttgattgggaatcaaactgacgggaacctgactgtcaacttgtctccgtctaattgcgtcaagtactttggagaatacaagtgtgtacctgaaagcattattggagaaggagagagtaaaacaacaacgagagaatttgaacttgaatcttctgtgactttgactccatcaaaaattgccaacgagggtgagaatgtaacactttcttgttcagcaaaggtttgcccaacatctgatattatgtggaagaagaacggaaataccttagagggtaaaacagggaacagactgcagcttctgtcggtcacaattgatgatactggagaatattcatgtcatgctactttctggaaaactactaaatcggcgaagatgaatctcacaatgaaccaaaatcctttccaactgccgttcacaccttctgggttttgcaaaattcaacaatccaagcctttgtagattcgtacgatggataaaaactgtcaatatctgtgaagtcccccacacaaaaatttagattaaaaaaattccgcaaattcccacaaatacagatttctctcacttcactattaacatctcctggtcactttaagctataaacctaatgtcaaactctgtctaatagctatatattcaactatttgtaaagtaaatcatacttaagttcaaaatttttgtcaaaatttagtacaccacaacaaaaattagtttgacagagattgaagtggagtagaaagtggaaaccttgaacagtactgaaaggaatgtggtggaatcttcgtttcaaatttcatcgaaattggtccaaaggatttcacttcataggcgattgaagatagctgttttcaatatgtatgtacaacaaaaatttgtcctctctaaagtctttttggagcacctcaaatgaaaaattgccaaaaaattgtctgtaaagatatgaagctaagttatatgttttcttggtcagcaactattactctttcaaattagagggctttggaattaaatggagaaagttgat

Transcript

scaffold340.g2.t1

tttaatttatttggaacttgcagtttgaagcttcctgctactatttctaaaccaacattcccacaagaagaagtaaaaaacgccaattcaacactacttttccgactactgtttgctgcgaatgtctcccaatgtgcccaatgtGCCCAATGTTGAATGTCGAATATCCAACTGACAATCGCGATCCGGATTGGAgagatgatatgatatttgatgatgatgatataataggataCCTTCCCTTGTTTGTTAGTTTGGAAGGATTGGAGTTGCACAATCAATTTGCATAAAACAACATTACCTTCAGGATCTCTTTTTCTTCGAGCGGACATCTTTATCGTTTGTATGAATTATTTCTGGATATTTTCCTGCACTGCACTAAGCAAGCACTTGCACTGAGCTTCTTCCTTATATTAAATTAGGCCAGTCGATTTCCCGCCTTCCTGAATCGTACAATCACGTGACAAGAATTACTCCAACCTCGTTTTCAAGGTGCCCTCGGAAAATTTTTTGTCATCAAAGGCAAAGGCATTtagactagctacactagtccctcgatttcgctgttgctgatggccagctcaatgagggactagttgccagagagtgtctcaaatcggaattttcagaacgaaaaacctgattgtaatctgattggagcatttcggctaaaacaatagaaaatttttttgtagccaatcaacttttcctctctttacttatttgtactggaGACCTGAAGAGCAGAagcaaatgaagctgaaggaatttagctagccacttggcatgatgaaatgggcactgggaagagatatttgtttgtgctctaacaggaaatggcaaaatgtaatgctgttgtgatacttgagaggcattttcaagacagcagtgagtgtcagtctgtcagtacactgcagtgtagtgtagGCCTAGGCCTACTCTAAGTTCAGGTTTGATTGAGTGGCGCGGCGTTAGAGGTTCTATCGGTTCTATCACTGATGTTGACATTCTGCAATACATATATCATTCGATCTGTGAGACGTTCTATTTGGTTTATTCATCATTCGATTTTTCGATCGCATACTAGTGATCATTAGTAATCACGGGTATGCCCGATAATGCATTTTCTCGTGTATTTTGACTGTGACATTGCTCTTTATTCATAACGGAAATTTATGGTTATATGCTGAAGAAATTGCTCTCGAGATTTGACTACACTGAAGGATTGAAAGAATTTACAAGGATCAGAATGATTTATCTATCATCTTTGCCAATAATCTTAGCCATCTGTCAACATGCATTGCCATTGGAGAGTGCCTCTGTTAACATATCTGTGTCTCATAGAAATATTACAGTTAATGGAAGCTTGGAAGTTAATTTGCTTGGTGTAGATCCCATTAGCAAATCAAGCACCCTTTCATGTTCCACTGTTACGGGCGGTGGTGCTAGATATGACATTGTTTATTATAATTTCTTCCTGAATACGTTGGTGTTGGAGAATCCCAAGCCTGCAGAGTATGATGGAAGAGTACAGATAACAAGCAATCGACAGTTTACAGTATCCCCAATCAAATTCATTGACGAGAAACTTGGCGTTCAATGCAAGATGACGTATTTTAATAAAGTGGGGACACGTTTTACTGTGCAAAGCAACAGCATTATCATAGAAAATGTGTATGCCTTTCCAGTCATCAGTGGAAACCATATTCAAGGATCATTTACTGCCATAAAAGGAACACCAACAGAAGTGACGTGCAGTGTAAGAAGCAGGCCAGCCTCTACTATCACATGGTCAGCTGAAACTGGAGTGATTGGTATCCCAGAAACACCAACTGTGCAACAAGATGGGTTCTATTACATCACAAAAGGAAGATACAACTTGTCTAACCCAGTTTATGCGATGGATGGAAAGAAAATCAATTGTACTGGTATACCGGTTTTCGGATCAGCTGTAACCATAGTTACTACATTGAATGTCTTATATCGTCCAGAAAATACCACATTCACAGTTACTCCCTCCAAGCTAGTCTTGAATACAACAATCAAGTTAACTTGCGCAGCAAAGGGACTACCGAGCGTCAGAAATTATGGACTCTATGTCAATGGAAAGTTGATTGGGAATCAATCTGACGGGAACCTGACTGTCAACTTGTCTCCGTCTAATTGCGTCAAGTACTTTGGAGAATACAAGTGTGTACCTGAAAGCATTATTGGAGAAGGAGAGAGTAAAACAACAACGAGAGAATTTGAATTTGAATATCGTCCAGAAAATACCACATTCACAGTTACTCCCTCCAAGCTAGTCTTGAATACAACAATCAAGTTAACTTGCGCAGCAAAGGGACTACCGAGCGTCAGAAATTATGGACTCTATGTCAATGGAAAGTTGATTGGGAATCAAACTGACGGGAACCTGACTGTCAACTTGTCTCCGTCTAATTGCGTCAAGTACTTTGGAGAATACAAGTGTGTACCTGAAAGCATTATTGGAGAAGGAGAGAGTAAAACAACAACGAGAGAATTTGAACTTGAATCTTCTGTGACTTTGACTCCATCAAAAATTGCCAACGAGGGTGAGAATGTAACACTTTCTTGTTCAGCAAAGGTTTGCCCAACATCTGATATTATGTGGAAGAAGAACGGAAATACCTTAGAGGGTAAAACAGGGAACAGACTGCAGCTTCTGTCGGTCACAATTGATGATACTGGAGAATATTCATGTCATGCTACTTTCTGGAAAACTACTAAATCGGCGAAGATGAATCTCACAATGAACCaaaatcctttccaactgccgttcacaccttctgggttttgcaaaattcaacaatccaagcctttgtagattcgtacgatggataaaaactgtcaatatctgtgaagtcccccacacaaaaatttagattaaaaaaattccgcaaattcccacaaatacagatttctctcacttcactattaacatctcctggtcactttaagctataaacctaatgtcaaactctgtctaatagctatatattcaactatttgtaaagtaaatcatacttaagttcaaaatttttgtcaaaatttagtacaccacaacaaaaattagtttgacagagattgaagtggagtagaaagtggaaaccttgaacagtactgaaaggaatgtggtggaatcttcgtttcaaatttcatcgaaattggtccaaaggatttcacttcataggcgattgaagatagctgttttcaatatgtatgtacaacaaaaatttgtcctctctaaagtctttttggagcacctcaaatgaaaaattgccaaaaaattgtctgtaaagatatgaagctaagttatatgttttcttggtcagcaactattactctttcaaattagagggctttggaattaaatggagaaagttgat

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13927 all species →	Ig_3	Immunoglobulin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR003598 all species →	Domain	Immunoglobulin subtype 2	Interproscan
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46958 all species →	B-CELL RECEPTOR CD22	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005769 all species →	Cellular Component	early endosome	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0009897 all species →	Cellular Component	external side of plasma membrane	Interproscan
GO:0019903 all species →	Molecular Function	protein phosphatase binding	Interproscan
GO:0030888 all species →	Biological Process	regulation of B cell proliferation	Interproscan
GO:0033691 all species →	Molecular Function	sialic acid binding	Interproscan
GO:0042113 all species →	Biological Process	B cell activation	Interproscan
GO:0042609 all species →	Molecular Function	CD4 receptor binding	Interproscan
GO:0050859 all species →	Biological Process	negative regulation of B cell receptor signaling pathway	Interproscan
GO:0055037 all species →	Cellular Component	recycling endosome	Interproscan
GO:0070062 all species →	Cellular Component	extracellular exosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for scaffold340.g2.t1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.