Gene detail

Detailed information of scaffold3472.g2.t1 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold3472:8265...18834
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold3472.g2.t1

ccctgtattgcgagtctgagctgcctctgctgctattgaactcttcttcgtaaacggggttatcttgtgcaccaacgacaacgaaatagaacaatccagacatcttcgcgttttgacttgtatgagtttttgctcgcagcttactttcttgcagccattttgtttgattgcggtgctttacggaggagctttttaacctcgttttgaagatgagggtccaacggcaataaaaaaagtgcgcgatctttcgaatttgctgttccacgttgtgcaaagatcacaaagagaagcagagttggagaaagaatggatccggctaatcgagtaaaggtttttgtgagaataaaaccgaccgcatcctttgcagatgattacatcaagcttcatgatgataaaaagtcaatgaccgttcattgcaagaaagataagagaaggaaatacctacacaatcaagttttggagtggaaatttccattcgatggcgttctacacaatgcaagtcaagataccacattcaaaaaatgtgcctccgaacttgtgacaagggctttggatgggtacaatggtacattgtttgcatatggagagaccggagctggcaagacatatacaatgactggcaaaaatgatttcaaacacagaggaatcataccaaggtcactcacgcagatgtacaaagagatcaaggaacgacatgactacgatataagcatcaggatctcatacatgcaaatttatcgagacaatatttacgatcttcttgaaacatcagggaatagttcggttgcaccagagcaactcgtagttgctgaagaagataatggctctacaaatgtcaaaggactttcatgtcatccggcacaaactgaagaagaggcactcagtttgctctttgagggtgaaagtaacaggattatcagccaccatcagttgaacaaattctcttcaagatcgcattgcattttctcaatattcattgaattgcgatcaagaacaatgtccagtgaaggctacactatatccaaattgaacctcgtggatcttgctggctctgaacgaattgggaagacattagcagaaggaaaagctcaagaagaggctatgcatatcaacaaatcattgacattcttagaacaagtcgtaattgctcttggtgatcagaagagagaccatgtcccgtatagacaaagcaagcttactcatgtgctgaaagactctattggtggatcatgccaaactgtaatgattgggaatatttggggcgagtttggacagcttgaagagacggtaatcagagaagttttcaaacaattcaaatttcacgtcgagcaaactgaagaagagaaacacgcattgcaagaaagacaggcaactgtagcgcaagaaaagatggaagcccctgtcaaacttttcaaaagaggtttatcagcgaaaggtgcgcgtggtaaggctggaagttccgctcatttgcaaggagttgatgcgcaggttggtgaaccagatgggcaaagttttggtattggcaacgcccctagccatgtgaaagctcagcatggaacatcatgtccttacactccaagaaaggtaagaaaaggaagtcggaaagaccttagaaaacacgacagcggacttgactcgaagagaacaccctcaccgattgataacacaaagcaattgacatctgttgatgatactctggctacgcctcctgcacctcctgagcctaggacacctccgcctaaagaagacgcatttgaagagtttagaagagagaaagggaaggaagtgaatgatgtgctagtcgaaaataaagacatccttagaagtaaaaagatggaagcaaaagaagcagtgtgtgatatcaaccacataaagaaagaacttgatgagagcaaggaaaaattagaaatgattataagcgaacgagaagcacaagaccaagatcaaaacgaggatgaaccaataattgacgaagaagaatacttattgataaaaggtatcagcgatttgaagctcagatacagatcaaaatttgaaacattgcaaaatcttcgctctgatatatcgtattgcgaggagatcgtacacctgtgtcggcaacgactcataacagagtttgatgcttggtacactgattcttatggtacacctattgccgaaaatgctgaaaagacagacgacttaaaatcagaagactcaaagaaagatgtcaaatcaatcagaataattgaagacgagcgagagaaatttgatcggctgcggatggaacttttgatggaagatcctgactccattccattctacaatgcgaaatcgcagactgagagacgtcagctttatcgtggtagtacgaagcggagacctggaaatgtggtcactcaagttaggaataaaccacctacttcacttaccatagaatagaaactgaagcatttgtgtgtaccgtgaaagctctattaagccccctctctatcaagctccctctctaataagcccctcccctctaagcaaaaaatttaaattagcccccttctctattaagcccccccccaacttatatcaaattccacaggctaccaaagatttcccatttattgagccaagtaagtttgcatgttaatattgacatggttcgaaataaagctgtgtcggatgtatgtattttgacttgtaattgtatgtattttgacttgtaataaggttgtgtgttgaatccgcaaaaaggtaaaagaactaaaaagctatcatatttatatccttgtcatttgattttgtgaataagctcccctctctttaataagccccctctcttttaagcccacctctctggagtgttcgaaattaaataagcccccccccacccgggggcttaatagagcttttacggtgtttgtgttgcaggatatctatgatttaagcaatcaatgatattttaatcaatgtgtatatgcaaagatctaaatatgaccagaagaatatagataatgataatatataaagaaataatatcgaagaagaatctttataggatacaaaataattaatgtatgatatgatagacagggtgttccaaaatggttgtgccatctttgaatggcagttgcggaggatctataattttagcagtctcgtttttgatactatgttatggaaaagtcttcaacttagagtttgagatcctgtatgtgtgaaaaggacaagcaattgcagagttatgatagaagaaagttgcttcaaaacctgagccctctcgggcctaagttaaacatcgctcttcccatgcgccgaacctcaatagttaaattaggtcgagtaatgagagttttaacaacatcacaggttccatttcacaatacgcaagcaacagaaagaactaacttatctcgactggcttgcaatagatcgacaaaggaactcgtggaaatatagattatgagtaactgtatattttgtaattgtgacattttaagaaacaccagatctgttacactgttgcttaaagaacaccttgccctactttgaacttatatattcaaatatcgggtctatatgcaaatgattgaaaaatagataaataaagcctgacaattcat

Transcript

scaffold3472.g2.t1

CCCTGTATTGCGAGTCTGAGCTGCCTCTGCTGCTATTGAACTCTTCTTCGTAAACGGGGTTATCTTGTGCACCAACGACAACGAAATAGAACAATCCAGACATCTTCGCGTTTTGACTTGTATGAGTTTTTGCTCGCAGCTTACTTTCTTGCAGCCATTTTGTTTGATTGCGGTGCTTTACGGAGGAGCTTTTTAACCTCGTTTTGAAGATGAGGGTCCAACGGCAATAAAAAAAGTGCGCGATCTTTCGAATTTGCTGTTCCACGTTGTGCAAAGATCACAAAGAGAAGCAGAGTTGGAGAAAGAATGGATCCGGCTAATCGAGTAAAGGTTTTTGTGAGAATAAAACCGACCGCATCCTTTGCAGATGATTACATCAAGCTTCATGATGATAAAAAGTCAATGACCGTTCATTGCAAGAAAGATAAGAGAAGGAAATACCTACACAATCAAGTTTTGGAGTGGAAATTTCCATTCGATGGCGTTCTACACAATGCAAGTCAAGATACCACATTCAAAAAATGTGCCTCCGAACTTGTGACAAGGGCTTTGGATGGGTACAATGGTACATTGTTTGCATATGGAGAGACCGGAGCTGGCAAGACATATACAATGACTGGCAAAAATGATTTCAAACACAGAGGAATCATACCAAGGTCACTCACGCAGATGTACAAAGAGATCAAGGAACGACATGACTACGATATAAGCATCAGGATCTCATACATGCAAATTTATCGAGACAATATTTACGATCTTCTTGAAACATCAGGGAATAGTTCGGTTGCACCAGAGCAACTCGTAGTTGCTGAAGAAGATAATGGCTCTACAAATGTCAAAGGACTTTCATGTCATCCGGCACAAACTGAAGAAGAGGCACTCAGTTTGCTCTTTGAGGGTGAAAGTAACAGGATTATCAGCCACCATCAGTTGAACAAATTCTCTTCAAGATCGCATTGCATTTTCTCAATATTCATTGAATTGCGATCAAGAACAATGTCCAGTGAAGGCTACACTATATCCAAATTGAACCTCGTGGATCTTGCTGGCTCTGAACGAATTGGGAAGACATTAGCAGAAGGAAAAGCTCAAGAAGAGGCTATGCATATCAACAAATCATTGACATTCTTAGAACAAGTCGTAATTGCTCTTGGTGATCAGAAGAGAGACCATGTCCCGTATAGACAAAGCAAGCTTACTCATGTGCTGAAAGACTCTATTGGTGGATCATGCCAAACTGTAATGATTGGGAATATTTGGGGCGAGTTTGGACAGCTTGAAGAGACGGTAATCAGAGAAGTTTTCAAACAATTCAAATTTCACGTCGAGCAAACTGAAGAAGAGAAACACGCATTGCAAGAAAGACAGGCAACTGTAGCGCAAGAAAAGATGGAAGCCCCTGTCAAACTTTTCAAAAGAGGTTTATCAGCGAAAGGTGCGCGTGGTAAGGCTGGAAGTTCCGCTCATTTGCAAGGAGTTGATGCGCAGGTTGGTGAACCAGATGGGCAAAGTTTTGGTATTGGCAACGCCCCTAGCCATGTGAAAGCTCAGCATGGAACATCATGTCCTTACACTCCAAGAAAGGTAAGAAAAGGAAGTCGGAAAGACCTTAGAAAACACGACAGCGGACTTGACTCGAAGAGAACACCCTCACCGATTGATAACACAAAGCAATTGACATCTGTTGATGATACTCTGGCTACGCCTCCTGCACCTCCTGAGCCTAGGACACCTCCGCCTAAAGAAGACGCATTTGAAGAGTTTAGAAGAGAGAAAGGGAAGGAAGTGAATGATGTGCTAGTCGAAAATAAAGACATCCTTAGAAGTAAAAAGATGGAAGCAAAAGAAGCAGTGTGTGATATCAACCACATAAAGAAAGAACTTGATGAGAGCAAGGAAAAATTAGAAATGATTATAAGCGAACGAGAAGCACAAGACCAAGATCAAAACGAGGATGAACCAATAATTGACGAAGAAGAATACTTATTGATAAAAGGTATCAGCGATTTGAAGCTCAGATACAGATCAAAATTTGAAACATTGCAAAATCTTCGCTCTGATATATCGTATTGCGAGGAGATCGTACACCTGTGTCGGCAACGACTCATAACAGAGTTTGATGCTTGGTACACTGATTCTTATGGTACACCTATTGCCGAAAATGCTGAAAAGACAGACGACTTAAAATCAGAAGACTCAAAGAAAGATGTCAAATCAATCAGAATAATTGAAGACGAGCGAGAGAAATTTGATCGGCTGCGGATGGAACTTTTGATGGAAGATCCTGACTCCATTCCATTCTACAATGCGAAATCGCAGACTGAGAGACGTCAGCTTTATCGTGGTAGTACGAAGCGGAGACCTGGAAATGTGGTCACTCAAGTTAGGAATAAACCACCTACTTCACTTACCATAGAATAGAAACTGAAGCATTTGTGTGTACCGtgaaagctctattaagccccctctctatcaagctccctctctaataagcccctcccctctaagcaaaaaatttaaattagcccccttctctattaagcccccccccaacttatatcaaattccacaggctaccaaagatttcccatttattgagccaagtaagtttgcatgttaatattgacatggttcgaaataaagctgtgtcggatgtatgtattttgacttgtaattgtatgtattttgacttgtaataaggttgtgtgttgaatccgcaaaaaggtaaaagaactaaaaagctatcatatttatatccttgtcatttgattttgtgaataagctcccctctctttaataagccccctctcttttaagcccacctctctggagtgttcgaaattaaataagcccccccccacccgggggcttaatagagcttttacggtgtttgtgttgcaggatatctatgatttaagcaatcaatgataTTTTAATCAATGTGTATATGCAAAGATCTAAATATGACCAGAAGAATATAGATAATGATAATATATAAAGAAATAATATCGAAGAAGAATCTTTATAGGATACAAAATAATTAATGTATGATATGatagacagggtgttccaaaatggttgtgccatctttgaatggcagttgcggaggatctataattttagcagtctcgtttttgatactatgttatggaaaagtcttcaacttagagtttgagatcctgtatgtgtgaaaaggacaagcaattgcagagttatgatagaagaaagttgcttcaaaacctgagCCCTCTCGggcctaagttaaacatcgctcttcccatgcgccgaacctcaatagttaaattaggTCGAGTAATGAGAGTTTTAACAACATCACAGGTTCCATTTCACAATACGCAAGCAACAGAAAGAACTAACTTATCTCGACTGGCTTGCAATAGATCGACAAAGGAACTCGTGGAAATATAGATTATGAGTAACTGTATATTTTGTAATTGTGACATTTTAAGAAACACCAGATCTGTTACACTGTTGCTTAAAGAACACCTTGCCCTACTTTGAACTTATATATTCAAATATCGGGTCTATATGCAAATGATTGAAAAATAGATAAATAAAGCCTGACAATTCAT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00225 all species →	Kinesin	Kinesin motor domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001752 all species →	Domain	Kinesin motor domain	Interproscan
IPR019821 all species →	Conserved_site	Kinesin motor domain, conserved site	Interproscan
IPR027640 all species →	Family	Kinesin-like protein	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR036961 all species →	Homologous_superfamily	Kinesin motor domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24115 all species →	KINESIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003777 all species →	Molecular Function	microtubule motor activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0007018 all species →	Biological Process	microtubule-based movement	Interproscan
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan
GO:0005871 all species →	Cellular Component	kinesin complex	Interproscan
GO:0005874 all species →	Cellular Component	microtubule	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10397	KIF6_9; kinesin family member 6/9	-	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.