Gene detail

Detailed information of scaffold348.g9.t1 in Morbakka virulenta

Genomic Location: scaffold348:232712...294095
NR annotation: XP_020908998.1, uncharacterized protein LOC110246954 [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

scaffold348.g9.t1

ATGGACGCTAACGTGTTTACTTTCTTTTTGGGAGTCATATTAATTCTGCGTTACACAGAAGATGCAGGTGCGCAGATGATGCTAGGTACTCCATGTTGCAAACGTGGAAGATCGAGTGTTGCTAGGAAACACGATATTAAATGTGAACAAAACATTGCTCGGTTATCGGGAGTTAATCAGCAGCCGATCTGTATGATAGAATGGACTGCATGCTGTCTTGGAGCGAAACAAAAACTGAGATGCGATGAAGGCATTGCAAAAGCAAGGCAAAATACAGTTTGCAACTTGCTCCGGGAGGGTGGAAAAGCCAATGAACAAGAACGTTGTTGCAGCTGTTGTCGAGTTGGCTTTCAATATGGCATTGATGGAAGAAATTGTCAGGAGTTGTTGGCTTTCTCATTTGCAAGTGATTGTAACAATATTGCAAAATCATGCTGTGATGACCTTAAAAGAGATTCAAGACTTAAAACTTTGATTACAAAGGGAAGACCAAGAAATAGAAAAACATGTAAAGACAGACCTTGTTCACATATCTGTGTCACTACATCAAATGGCTATCGTTGTTTATGTAGAAGAGGCTATACCCTGCAGACAGATGGAATATCTTGTAAAGGCATAAGCACCCAACTAGGATGCAGAAATAACCGATGTGTGTTTAGATGTCAATCTTTAGGAAGGTGGAGACATCAGTGCCTATGCCCATCAGGATACAGACTGGCAAATGATTATACTTCATGCCGAGtgagggtttactctagggacattgggatggagtttgggttagataagtgtgctgttttggaaattagacgaggtgaaagggctgaatgtgagggaatcgagctaccgagtggggagttgatgaaggaggttgatgaagatgggtacaagtacctgggagtgctagaaggggcgaaagtaatgcagaagaagatgaaggagaaaattgggaatgagtacctacgacgtgtgaaattgctggcaaagtcgaggttgtatgctgggaacttggttcgcggcatcaatgcgtgggcagttagtgttgtccgatacagctctggaatactggattggtctgatgctgagctacgtaaacttgataccaagacaaggaagattttaacgatgaatggtgctttccataggaatagtagtgtagatcgtctgtacatcggaagaaaggatgggggtcgtggcctgatcagcgttgaagattgtgtgaggcaggaagagttagggttagaagagtatgtacatgctactgaggagacgattttggaacaggtggctggaatgattatgcatggaagggagacaaagaagcattacaagacgagagtggttgaggagagaaaggagagattgatggagaaggctatgcatggtaggttctttcgggagatggatgaaaatgcaacagagagatcagtacagtgggttaaaggtggtttccttgcaaaaagcacagaggcatttgtgtttgctgctcaagagcaagcattgaggacaaggttggcgcagtcgaagtgggatggtggtgttagtcctatgtgtcgcatctgcggaattgaatctgagtcagtttggcatgttgcgtgtgggtgtaaggtactggctcagaaggagtacaagaggcgacatgataggatgggattgagaatatattgggagctgtgcaagaagtatgggttgaaatgtgcggggaaatggtttgaagaggtgcctgacaaagttagaaagagtgaagatgATATCAATGAATGCGCCACCCAGCCGAATGCCTGTGGACAAGGGACAGTGTGCTTCAATACATACGGCAGCTATAAATGCGTTCCAACAACGTGCCCTAGAAAGTACCAGAAAAAAACCAGCTTAAGGTATTGCGTCAAAACAACATGTAGTGCTGGTGATACGCAGTGCAGAAATGACCCCACCTATTCTTATCAATGGATGCCATCGGCTTTGCTTAGTGGTATTAAGCCTAGAAGGGCGGAATATTACTATACATTATCAAAGCCATCATTTCCTTCTGATGTTAGATTCTCCATTGGAGGGGGGAATGATGGGACATTTTATCTTCAGCCGGCTGGCAAATACAAAGTATTTTTAAGAAATCAGAGAGCCTTGACCGGGCCGCGAGATTACAGAATCGAGCTTCATATTGATATTTATACAAACAACAGGCTCTATACTCGATTGGTGAATGTATTTTTTATCTTTGTCTCGTCGTTTACTTTTGCATAA

Transcript

scaffold348.g9.t1

CAATTTGTTAAGCTCTTGTCTCGAAGAAATCACTGAGAAGGAAGATTGGTCTTGGAGTGAAATTGAAGCACCACTGTTAGTTAACTCAAAGAATGGACGCTAACGTGTTTACTTTCTTTTTGGGAGTCATATTAATTCTGCGTTACACAGAAGATGCAGGTGCGCAGATGATGCTAGGTACTCCATGTTGCAAACGTGGAAGATCGAGTGTTGCTAGGAAACACGATATTAAATGTGAACAAAACATTGCTCGGTTATCGGGAGTTAATCAGCAGCCGATCTGTATGATAGAATGGACTGCATGCTGTCTTGGAGCGAAACAAAAACTGAGATGCGATGAAGGCATTGCAAAAGCAAGGCAAAATACAGTTTGCAACTTGCTCCGGGAGGGTGGAAAAGCCAATGAACAAGAACGTTGTTGCAGCTGTTGTCGAGTTGGCTTTCAATATGGCATTGATGGAAGAAATTGTCAGGAGTTGTTGGCTTTCTCATTTGCAAGTGATTGTAACAATATTGCAAAATCATGCTGTGATGACCTTAAAAGAGATTCAAGACTTAAAACTTTGATTACAAAGGGAAGACCAAGAAATAGAAAAACATGTAAAGACAGACCTTGTTCACATATCTGTGTCACTACATCAAATGGCTATCGTTGTTTATGTAGAAGAGGCTATACCCTGCAGACAGATGGAATATCTTGTAAAGGCATAAGCACCCAACTAGGATGCAGAAATAACCGATGTGTGTTTAGATGTCAATCTTTAGGAAGGTGGAGACATCAGTGCCTATGCCCATCAGGATACAGACTGGCAAATGATTATACTTCATGCCGAGtgagggtttactctagggacattgggatggagtttgggttagataagtgtgctgttttggaaattagacgaggtgaaagggctgaatgtgagggaatcgagctaccgagtggggagttgatgaaggaggttgatgaagatgggtacaagtacctgggagtgctagaaggggcgaaagtaatgcagaagaagatgaaggagaaaattgggaatgagtacctacgacgtgtgaaattgctggcaaagtcgaggttgtatgctgggaacttggttcgcggcatcaatgcgtgggcagttagtgttgtccgatacagctctggaatactggattggtctgatgctgagctacgtaaacttgataccaagacaaggaagattttaacgatgaatggtgctttccataggaatagtagtgtagatcgtctgtacatcggaagaaaggatgggggtcgtggcctgatcagcgttgaagattgtgtgaggcaggaagagttagggttagaagagtatgtacatgctactgaggagacgattttggaacaggtggctggaatgattatgcatggaagggagacaaagaagcattacaagacgagagtggttgaggagagaaaggagagattgatggagaaggctatgcatggtaggttctttcgggagatggatgaaaatgcaacagagagatcagtacagtgggttaaaggtggtttccttgcaaaaagcacagaggcatttgtgtttgctgctcaagagcaagcattgaggacaaggttggcgcagtcgaagtgggatggtggtgttagtcctatgtgtcgcatctgcggaattgaatctgagtcagtttggcatgttgcgtgtgggtgtaaggtactggctcagaaggagtacaagaggcgacatgataggatgggattgagaatatattgggagctgtgcaagaagtatgggttgaaatgtgcggggaaatggtttgaagaggtgcctgacaaagttagaaagagtgaagatgATATCAATGAATGCGCCACCCAGCCGAATGCCTGTGGACAAGGGACAGTGTGCTTCAATACATACGGCAGCTATAAATGCGTTCCAACAACGTGCCCTAGAAAGTACCAGAAAAAAACCAGCTTAAGGTATTGCGTCAAAACAACATGTAGTGCTGGTGATACGCAGTGCAGAAATGACCCCACCTATTCTTATCAATGGATGCCATCGGCTTTGCTTAGTGGTATTAAGCCTAGAAGGGCGGAATATTACTATACATTATCAAAGCCATCATTTCCTTCTGATGTTAGATTCTCCATTGGAGGGGGGAATGATGGGACATTTTATCTTCAGCCGGCTGGCAAATACAAAGTATTTTTAAGAAATCAGAGAGCCTTGACCGGGCCGCGAGATTACAGAATCGAGCTTCATATTGATATTTATACAAACAACAGGCTCTATACTCGATTGGTGAATGTATTTTTTATCTTTGTCTCGTCGTTTACTTTTGCATAATGATTCTTGGACGTGGTCATTGTTGAAATAACACCATCAAAACGAAGCAAGAGGATCAGCTTGTTGTTCATGCATAAAGGGAAAAAAAGATGGTACTTTTTGGATCAGGCAATGTTCACCGACATTGAAATGATAAAAAGAGCAGATATTTTTATTAAATAATAAGGCATAAC

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00008	EGF	EGF-like domain	Domain	Interproscan
PF07645	EGF_CA	Calcium-binding EGF domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018097	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR000742	Domain	EGF-like domain	Interproscan
IPR001881	Domain	EGF-like calcium-binding domain	Interproscan
IPR000020	Domain	Anaphylatoxin/fibulin	Interproscan
IPR009030	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR049883	Domain	NOTCH1 EGF-like calcium-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR35450	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005576	Cellular Component	extracellular region	Interproscan