Gene detail

Detailed information of scaffold35.g35.t2 in Aurelia aurita

Genomic Location: scaffold35:400826...457157
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold35.g35.t2

tcagtttgtgaccttgtttattgacttgaacgtgtttcactccactgctttatctgtgtcgtgatttcaagaacacaatataacagaattaacaccaaaggcgccacaatttgcgacacaagaaatgttcttttgaaacatttatgaactgagggatttgcattcacaaagcggttatggcgactttgcaggagctagctgcctcgcaagagacaaaacaacaagagggcctaactggagagcaagggcaagaaaatcccgcctttgtgacacattcagagtcgaagattgttccagaggaagaaaaaaggaagaagccactgccccagaaagcacatacaattgattatttaccaatagcctaagtttgttgtgttcttgtccatcttattataagaagtaacgctgctataactcaatgtgcatttgagtatgcgcaattaaatgagagatgcaaacaccccaagaatgtaaaagacgaagatggacgagctagccctgcatttgacattgtcgatggcaacgaagcggaaaaccctcctttacccgccattgggacaaggatatcacaaatttttaaagctcgagaaaatgtcgttaaattacatatggctgcgagggaagcggaattcactgaaaaatttccattcacattattcgttggaacttggaatgtcaacggtcaagtcgctggtgaatgtttaaaaccatggtttaaagtcgatacagacccgccagatattatagctgtaggatttcaagaactcgatcttagcgcggaagcattagttttcaatgattcaagcagagaagaatcgtggataaaagcgctcgagaaatcactgcccgatggtgctgtttatacacaaataaaaacaattcgtctcgtcggaatgatgttagtagtatttgtacaaacgaaacacatggcacatataattgatatatcatcagagacatgtggcactggaatcatgggtaaaatgggaaacaaaggagctgtttcagtgcggtttcaactgcataattcgacgattgcatttgttaattcgcatctagcagcgcatttagcagaatacgaaagacgcaatcaggatttcaaagacatcagtaacaaattacagttttcaaaattcgaaccaccaatgacgataaatcaccacgacatcgtcatctggcttggcgacttgaattatcgatttgacgatttggaagtagatcaaatcaaagtattgattgaacaaaacaaattagatgaattgtataaatttgaccagttacggaaacaaagatcagctaagaaagtatttcaaggatattcagaaggaaaaatagctttcaaaccaacatacaaatttgacccagggacggatgaatgggatacgagtgaaaaaggccgggcgccagcttggtgtgataggatactatggagaggaaaaggaatcgagccattgttatatggaagtcagcctttattgaaacttagtgatcataaaccagttcgtggaatttttcaagcaggggtgaaaattgtaaataggacaaaagaaaggcaagtctttgaagacataatgcttaaacttgatcgactagaaaatgacaacctaccgcaggtcaaacttggaaagacagagtttaccttcagtgatgttagattcatggaggatcaaacagaattgcttccagtcgctaacgttggacaggtacctgcagaattccaattcattccaaaactagatgataaagaaatatcgaaaccatggctaaagatacagccaaggtctggagctattatgccaggggatgtcttggaaattgaaatcacagtaacaatggataaagaagtggtttcaacattgaacaatgaaatgaagcttgatgatatccttgttttgcatctgctcagcgggaaagatttcttcgttcccattaacgcaatctatacccccagtgtatttggttccccactttcctcgctcgtcaagatgtatggccctattcaacaaatttcagtgcaagagttattacgactgaatcgtggcgagaaaatagaaggagctggcattggtacagaaccattggatattccgaaagaattatggttgctggttgatcatttataccaacatggcatgcgagaggaaaacattttaattcaatcagggctggattctgaaatcgtgatgattagaaattacttagatgatggtagaagaggcactatgcctggtagcattttctctgtaggcgaagctcttctgttatttctagaagctcttccagaacccgtgattccttacaagttccagagtaaatgtatggatgcttgtcaaaactacatcttatgtaaacaggttgtgagtcaaatgccagaatgtcacatccacgtgttcagatatatttctgcatttttgagagaaatgttaaaacatgcagcggaaaacaaacttggtgcaaaaattctagctacaatatttggcacaattctattacgaggaccgaaggatcaagggaatgttagcagaagaacagaatcacaaattggacaaaagaaagcgagatttgtataccacttccttgtcaatgatttcaacgaataatgtctaccaattcttggcaacacaataatatcaacgagggtcgtttcaacaagggtagactatgcaccaataacatccattgcttttgattgacacgctagtacaaagcattggcgattgcaaacaaatggaatatctacggccaattagtcatgctgcaagtgtaaataaagcaggttgcaaaagatgacatgaaacctggataactaactcatttgttatgcatgtgagaaggggtcgtgaaagtaaattaacggagtgaagaatggcttagctaggggcactggggcaatctaaatgtaacctgttgtagtcgatgttctcgatcgatgaaaagaataggaacataagtggcgtgcgaccttcttttgttatctgtttagacaagatctctatatctccgttcatttactttgagggactacttgagtatttcgaaagaataaggatagatctaaacatctacctcgggcatgttatgtatcgaattcagaacctcgacatttagtgtttgaagtacacaaacaagaactgtaatgcctactgtacagcttcggaattagatacatcagatgccctaggcagatgttttgggcttatctttcctctttcgatgcatgtttgggtcgtctcttaacaacgccttttcgcatgcataatgagacagttagccatactggtgtcgggttatcttgtgcaatttgctttatttgcattcatggcccgcaggaattcctttgtcagcaatcgctaatcgctttgtattagcgtatcaataaaaagcaacggatgctgttgttgccagatctgtcggatgtttctcttgtcgacaagggaatgcttagaacagaaacagtgcagaaagatatcaaatatgacgttggaagaaaggatggctgaaatgctggggattgatccaaagacgtgaatgtgcagatagcaatataatgaactatacacttgtacatattaggagttgaaataaattggaatactaaagactaatagattaaatggcatattcttcaaccgaaaaggcttttcacaattgtaaagatatacaggacatattacagctgttcacgttgtttgtttaccatagcatatgttcctttagatattattttagtcagtaaggacaactacttgagtcagaacgaatgttgttgtaatgtttgaaagtgttgttgtagaggtaggcctattatcttggtcgttttcttttgtatctaggttcccttgaaatttttcagcatcaagttctctttttacgttaatagtaagtattttttagtaattttgtacttatcattgcatcagttacaactgtattcctattaaaataactcccatgtcaagctacaaaatggacacatcagctgtggaagcaaatcggcccagttttatatgaagagggaccgatcgccgcaagatctcttttgtctgaaattatgagttaaaaagttggtcgaccctctagctggtcctcttttacctaacgttcaaccgaaagtcgactctcaagacttgaattgtattctatagacattttacataggcttgtggaagaaccaagcagtgcctcttcaaactagacttactgcattcatcgtagttttgtttttcgtatttcgtattttttcattttcgaatcccgggaaagtgaattgcgaagcgttttagcattggtgttttccatttgataacttaggcccgttatcgtttcaacttacaattggatattgacagcaggaaaccgattttcaaattgccgactttcgaagggtaccgaatcaacgtaacaacaagttttatccaccatgttttagctcgaagatacctttccagctaattccgttttttatgctttgaatgtaattcttaatgtttgattatgcaattcaattttatgtaactaaaaacatggttgttttatgtcactatttagcacgcatattcatttatctcaatgagaaaatgttaattgtttttacaactattgtattgccttgtaaatgtgacagtggtaatgttgtatatagctaaatagttaataaggctatggattttgttttcacgcgtcactgaggattctttgttgtgattatcacgtgactaattaaactgacagaggaatg

Transcript

scaffold35.g35.t2

TCAGTTTGTGACCTTGTTTATTGACTTGAACGTGTTTCACTCCACTGCTTTATCTGTGTCGTGATTTCAAGAACACAATATAACAGAATTAACACCAAAGGCGCCACAATTTGCGACACAAGAAATGTTCTTTTGAAACATTTATGAACTGAGGGATTTGCATTCACAAAGCGGTTATGGCGACTTTGCAGGAGCTAGCTGCCTCGCAAGAGACAAAACAACAAGAGGGCCTAACTGGAGAGCAAGGGCAAGAAAATCCCGCCTTTGTGACACATTCAGAGTCGAAGATTGTTCCAGAGGAAGAAAAAAGGAAGAAGCCACTGCCCCAGAAAGCACATACAATTGATTATTTACCAATAGCCTAAGTTTGTTGTGTTCTTGTCCATCTTATTATAAGAAGTAACGCTGCTATAACTCAATGTGCATTTGAGTATGCGCAATTAAATGAGAGATGCAAACACCCCAAGAATGTAAAAGACGAAGATGGACGAGCTAGCCCTGCATTTGACATTGTCGATGGCAACGAAGCGGAAAACCCTCCTTTACCCGCCATTGGGACAAGGATATCACAAATTTTTAAAGCTCGAGAAAATGTCGTTAAATTACATATGGCTGCGAGGGAAGCGGAATTCACTGAAAAATTTCCATTCACATTATTCGTTGGAACTTGGAATGTCAACGGTCAAGTCGCTGGTGAATGTTTAAAACCATGGTTTAAAGTCGATACAGACCCGCCAGATATTATAGCTGTAGGATTTCAAGAACTCGATCTTAGCGCGGAAGCATTAGTTTTCAATGATTCAAGCAGAGAAGAATCGTGGATAAAAGCGCTCGAGAAATCACTGCCCGATGGTGCTGTTTATACACAAATAAAAACAATTCGTCTCGTCGGAATGATGTTAGTAGTATTTGTACAAACGAAACACATGGCACATATAATTGATATATCATCAGAGACATGTGGCACTGGAATCATGGGTAAAATGGGAAACAAAGGAGCTGTTTCAGTGCGGTTTCAACTGCATAATTCGACGATTGCATTTGTTAATTCGCATCTAGCAGCGCATTTAGCAGAATACGAAAGACGCAATCAGGATTTCAAAGACATCAGTAACAAATTACAGTTTTCAAAATTCGAACCACCAATGACGATAAATCACCACGACATCGTCATCTGGCTTGGCGACTTGAATTATCGATTTGACGATTTGGAAGTAGATCAAATCAAAGTATTGATTGAACAAAACAAATTAGATGAATTGTATAAATTTGACCAGTTACGGAAACAAAGATCAGCTAAGAAAGTATTTCAAGGATATTCAGAAGGAAAAATAGCTTTCAAACCAACATACAAATTTGACCCAGGGACGGATGAATGGGATACGAGTGAAAAAGGCCGGGCGCCAGCTTGGTGTGATAGGATACTATGGAGAGGAAAAGGAATCGAGCCATTGTTATATGGAAGTCAGCCTTTATTGAAACTTAGTGATCATAAACCAGTTCGTGGAATTTTTCAAGCAGGGGTGAAAATTGTAAATAGGACAAAAGAAAGGCAAGTCTTTGAAGACATAATGCTTAAACTTGATCGACTAGAAAATGACAACCTACCGCAGGTCAAACTTGGAAAGACAGAGTTTACCTTCAGTGATGTTAGATTCATGGAGGATCAAACAGAATTGCTTCCAGTCGCTAACGTTGGACAGGTACCTGCAGAATTCCAATTCATTCCAAAACTAGATGATAAAGAAATATCGAAACCATGGCTAAAGATACAGCCAAGGTCTGGAGCTATTATGCCAGGGGATGTCTTGGAAATTGAAATCACAGTAACAATGGATAAAGAAGTGGTTTCAACATTGAACAATGAAATGAAGCTTGATGATATCCTTGTTTTGCATCTGCTCAGCGGGAAAGATTTCTTCGTTCCCATTAACGCAATCTATACCCCCAGTGTATTTGGTTCCCCACTTTCCTCGCTCGTCAAGATGTATGGCCCTATTCAACAAATTTCAGTGCAAGAGTTATTACGACTGAATCGTGGCGAGAAAATAGAAGGAGCTGGCATTGGTACAGAACCATTGGATATTCCGAAAGAATTATGGTTGCTGGTTGATCATTTATACCAACATGGCATGCGAGAGGAAAACATTTTAATTCAATCAGGGCTGGATTCTGAAATCGTGATGATTAGAAATTACTTAGATGATGGTAGAAGAGGCACTATGCCTGGTAGCATTTTCTCTGTAGGCGAAGCTCTTCTGTTATTTCTAGAAGCTCTTCCAGAACCCGTGATTCCTTACAAGTTCCAGAGTAAATGTATGGATGCTTGTCAAAACTACATCTTATGTAAACAGGTTGTGAGTCAAATGCCAGAATGTCACATCCACGTGTTCAGATATATTTCTGCATTTTTGAGAGAAATGTTAAAACATGCAGCGGAAAACAAACTTGGTGCAAAAATTCTAGCTACAATATTTGGCACAATTCTATTACGAGGACCGAAGGATCAAGGGAATGTTAGCAGAAGAACAGAATCACAAATTGGACAAAAGAAAGCGAGATTTGTATACCACTTCCTTGTCAATGATTTCAACGAATAATGTCTACCAATTCTTGGCAACACAATAATATCAACGAGGGTCGTTTCaacaagggtagactatgcaccaataacatccattgcttttgattgacacgctagtacaaagcattggcgattgcaaacaaatggaatatctacggccaattagtcatgctgcaagtgtaaataaagcaggttgcaaaagatgacatgaaacctggataactaactcatttgttatgcatgtgagaaggggtCGTGaaagtaaattaacggagtgaagaatggcttagctaggggcactggggcaatctaaatgtaacctgttgtagtcgatgttctcgatcgatgaaaagaataggaacataagtggcgtgcgaccttcttttgttatctgtttagacaagatctctatatctccgttcatttactttgagggactacttgagtatttcgaaagaataaggatagatctaaacatctacctcgggcatgttatgtatcgaattcagaacctcgacatttagtgtttgaagtacacaaacaagaactgtaatgcctactgtacagcttcggaattagatacatcagatgccctaggcagatgttttgggcttatctttcctctttcgatgcatgtttgggtcgtctcttaacaacgccttttcgcatgcataatgagacagttagccatactggtgtcgggttatcttgtgcaatttgctttatttgcattcatggcccgcaggaattcctttgtcagcaatcgctaatcgctttgtattagcgtatcaataaaaagcaacggatgctgttgttgccagatctgtcGGATGTTTCTCTTGTCGACAAGGGAATGCTTAGAACAGAAACAGTGCAGAAAGATATCAAATATGACGTTGGAAGAAAGGATGGCTGAAATGCTGGGGATTGATCCAAAGACGTGAATGTGCAGATAGCAATATAATGAACTATACACTTGTACATATTAGGAGTTGAAATAAATTGGAATACTAAAGACTAATAGATTAAATGGCATATTCTTCAACCGAAAAGGCTTTTCACAATTGTAAAGATATACAGGACATATTACAGCTGTTCACGTTGTTTGTTTACCATAGCATATGTTCCTTTAGATATTATTTTAGTCAGTAAGGACAACTACTTGAGTCAGAACGAATGTTGTTGTAATGTTTGAAAGTGTTGTTGTAGAGGTAGGCCTATTATCTTGGTCGTTTTCTTTTGTATCTAGGTTCCCTTGAAATTTTTCAGCATCAAGTTCTCTTTTTACGTTAATAGTAAGTATTTTTTAGTAATTTTGTACTTATCATTGCATCAGTTACAACTGTATTCCTATTAAAATAACTCCCATGTCAAGCTACAAAATGGACACATCAGCTGTGGAAGCAAATCGGCCCAGTTTTATATGAAGAGGGACCGATCGCCGCAAGATCTCTTTTGTCTGAAATTATGAGTTAAAAAGTTGGTCGACCCTCTAGCTGGTCCTCTTTTACCTAACGTTCAACCGAAAGTCGACTCTCAAGACTTGAATTGTATTCTATAGACATTTTACATAGGCTTGTGGAAGAACCAAGCAGTGCCTCTTCAAACTAGACTTACTGCATTCATCGTAGTTTTGTTTTTCGTATTTCGTATTTTTTCATTTTCGAATCCCGGGAAAGTGAATTGCGAAGCGTTTTAGCATTGGTGTTTTCCATTTGATAACTTAGGCCCGTTATCGTTTCAACTTACAATTGGATATTGACAGCAGGAAACCGATTTTCAAATTGCCGACTTTCGAAGGGTACCGAATCAACGTAACAACAAGTTTTATCCACCATGTTTTAGCTCGAAGATACCTTTCCAGCTAATTCCGTTTTTTATGCTTTGAATGTAATTCTTAATGTTTGATTATGCAATTCAATTTTATGTAACTAAAAACATGGTTGTTTTATGTCACTATTTAGCACGCATATTCATTTATCTCAATGAGAAAATGTTAATTGTTTTTACAACTATTGTATTGCCTTGTAAATGTGACAGTGGTAATGTTGTATATAGCTAAATAGTTAATAAGGCTATGGATTTTGTTTTCACGCGTCACTGAGGATTCTTTGTTGTGATTATCACGTGACTAATTAAACTGACAGAGGAATG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03372 all species →	Exo_endo_phos	Endonuclease/Exonuclease/phosphatase family	Domain	Interproscan
PF00620 all species →	RhoGAP	RhoGAP domain	Domain	Interproscan
PF21310 all species →	OCRL-like_ASH	Inositol polyphosphate 5-phosphatase OCRL-like, ASH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005135 all species →	Domain	Endonuclease/exonuclease/phosphatase	Interproscan
IPR036691 all species →	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR000300 all species →	Domain	Inositol polyphosphate-related phosphatase	Interproscan
IPR000198 all species →	Domain	Rho GTPase-activating protein domain	Interproscan
IPR037793 all species →	Domain	OCRL1/INPP5B, INPP5c domain	Interproscan
IPR048869 all species →	Domain	OCRL-1/2, ASH domain	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR008936 all species →	Homologous_superfamily	Rho GTPase activation protein	Interproscan
IPR046985 all species →	Family	Inositol 5-phosphatase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11200 all species →	INOSITOL 5-PHOSPHATASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0016791 all species →	Molecular Function	phosphatase activity	Interproscan
GO:0046856 all species →	Biological Process	phosphatidylinositol dephosphorylation	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0052745 all species →	Molecular Function	inositol phosphate phosphatase activity	Interproscan
GO:0004439 all species →	Molecular Function	phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01099	INPP5B_F; inositol polyphosphate 5-phosphatase INPP5B/F	EC:3.1.3.36	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.