Gene detail

Detailed information of scaffold358.g16.t2 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold358:193622...213894
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold358.g16.t2

cagtctcatggtttcattcagcaggttgcatgcaaaaatatatcaaagctcaaggccacagaaagtgcttcaaaatattatcgaaatatcttgattattcactcaattaattcaattttgttgaccaaataatcatggttgaaaacagtctagctgccaaggtcggagctccgagtgcaatgagtcaaacaacaccaagaattcaacaaaataaagaagtgatttttagagccaatcctcaacgactttcaatggatgggactcctggtacaatcaaattgaaaaggaaacgggaatcattatctgatggaagacatgaagcggcagcaaatcctttcaacatgactgcaaggaattttccaaagagaagaccacttggaaaggctgctatcatgatgaacagaaccagggcaaacactagcaataatcctgcaaaggcattagaattggttagagctgcattgcagccaagtttgaatgctgatattgaaagagttctcgtgaactatcaagagatgttcagaatggcagcttataacatctctgataatacaaaggaaccaatctcagaggatcacgtcaagtatatattgaggagatctctagatgaggcgaagtcgatattcaaagttgacagcaaagatggcgacggagaacaaatgtcaaagattgcagagaagagggaggtcgctataaagccggtgataatcagaaagaaaaaaatccgacgtgatgatcacagggaaaagcccagagatgattacaactacccatcgtgggatgaatcaagattaactgacgaaactgagttgatcatgggtgtcaaggctaacaaaattttaggattcgcttcagcaagaggaagattgtattcaaggcatccggacctgttcaagtatatggcagatcaggatgataaacaatggctgtatgataatgggcatatgccaataactggcggaaaggcctttttgatgatagctgatgacattcgaaacctggcaacgacgcatcaagattacaaggacaatttaggaataacaagagaagatattaaaggttttgtgatgccaacttttatgatccagaaagtgaaagcagcaataaaaagatttgttctcaagaattctcaagaattatcaagaaatctcaagaattcttgggctggaaaacagtgttaatgtgtgcaaggcctgctcatatataagaacctttttaagaaccttacaggctggaatttagaatagcagccatttaattaagaaccaattcaggctgcccagaaaaaacctaggttcttttatgcgggtttctactgtatcactgttgttcacattcgaaaattcatctgtttgtaagatatttaacaaaatatctctcgatccagactcttttgtagatagataaagctctccccccctcccccttacaatgttggttccttgcgtgattacgcatttctcaagggcacaacaacgcagccaaagcgattttcgttatatctggtgatcagtgcttcggaccaacattgttcagggggggggcaggggggcaagggaaaagagtagcgtgaagtttcctgcactgtattttggatgcttggtcggagaagaaaagagagaaatgaaatttttttcaagttgttttggcaaggattgtagcttaatttcccttcctttccgaagttcggaagtttttcagaaagggtctctttaaaaagggctcaaaattatggtcaaagttattggttttcctgcctcacagcaacgacaatatcatgctagtactgaactttttacagacgaaagcccaaggaaagtgtttcttccctttaggaaacctttgaagttttacttcattttcgtatgaaacaactccgaattttgcaaacactttttgccgagttgagtctaaagaagccctgaaggggttttcaagcctcctgaaaacctagagcttctgagatagcgtattcttcagctctatcatggaaagatcctggaaattagcgattcccatgtctgagtttggctttagattttaaattctctttagtagtggtcttttcattgagttatttatacctataaataccgactttctatttattagtaacgcagattctttataattctaggtaggtaaactgctagtacgtataatgactgcgttagaaatcctattgaatttaacaatactaactcaacaaaacggacttatttcgaccttccttttctgaaatctatcattttccggacgctgttagttttgtcgtctcagtttttcgaggagcctacccaatgatgcattcaatgctttgaaggataacttccttgtgtatttgtgttcagttgcaacagcgttgatcactttcggaatttttggccttgtcttggcttcagcatttggtagtttcgttcataacaaagaagggcacgagtctctaaaagatgaagattttggaatcataaataccagaatacaatgattcgggaagtgtaaacttattggtctcgatatacttaaaataatctcgcacaaattgagtgactagaatcttaaaatcattgtgncagtttttcgaggagcctacccaatgatgcattcaatgctttgaaggataacttccttgtgtatttgtgttcagttgcaacagcgttgatcactttcggaatttttggccttgtcttggcttcagcatttggtagtttcgttcataacaaagaagggcacgagtc

Transcript

scaffold358.g16.t2

CAGTCTCATGGTTTCATTCAGCAGGTTGCATGCAAAAATATATCAAAGCTCAAGGCCACAGAAAGTGCTTCAAAATATTATCGAAATATCTTGATTATTCACTCAATTAATTCAATTTTGTTGACCAAATAATCATGGTTGAAAACAGTCTAGCTGCCAAGGTCGGAGCTCCGAGTGCAATGAGTCAAACAACACCAAGAATTCAACAAAATAAAGAAGTGATTTTTAGAGCCAATCCTCAACGACTTTCAATGGATGGGACTCCTGGTACAATCAAATTGAAAAGGAAACGGGAATCATTATCTGATGGAAGACATGAAGCGGCAGCAAATCCTTTCAACATGACTGCAAGGAATTTTCCAAAGAGAAGACCACTTGGAAAGGCTGCTATCATGATGAACAGAACCAGGGCAAACACTAGCAATAATCCTGCAAAGGCATTAGAATTGGTTAGAGCTGCATTGCAGCCAAGTTTGAATGCTGATATTGAAAGAGTTCTCGTGAACTATCAAGAGATGTTCAGAATGGCAGCTTATAACATCTCTGATAATACAAAGGAACCAATCTCAGAGGATCACGTCAAGTATATATTGAGGAGATCTCTAGATGAGGCGAAGTCGATATTCAAAGTTGACAGCAAAGATGGCGACGGAGAACAAATGTCAAAGATTGCAGAGAAGAGGGAGGTCGCTATAAAGCCGGTGATAATCAGAAAGAAAAAAATCCGACGTGATGATCACAGGGAAAAGCCCAGAGATGATTACAACTACCCATCGTGGGATGAATCAAGATTAACTGACGAAACTGAGTTGATCATGGGTGTCAAGGCTAACAAAATTTTAGGATTCGCTTCAGCAAGAGGAAGATTGTATTCAAGGCATCCGGACCTGTTCAAGTATATGGCAGATCAGGATGATAAACAATGGCTGTATGATAATGGGCATATGCCAATAACTGGCGGAAAGGCCTTTTTGATGATAGCTGATGACATTCGAAACCTGGCAACGACGCATCAAGATTACAAGGACAATTTAGGAATAACAAGAGAAGATATTAAAGGTTTTGTGATGCCAACTTTTATGATCCAGAAAGTGAAAGCAGCAATAAAAAgatttgttctcaagaattctcaagaattatcaagaaatctcaagaattcttgggctggaaaacagtgttaatgtgtgcaaggcctgctcatatataagaacctttttaagaaccttacaggctggaatttagaatagcagccatttaattaagaaccaattcaggctgcccagaaaaaacctaggttcttttatgcgggtttctactgtatcactgttgttcacattcgaaaattcatctgtttgtaagatatttaacaaaatatctctcgatccagactcttttgtagatagataaagctctccccccctcccccttacaatgttggttccttgcgtgattacgcatttctcaagggcacaacaacgcagccaaagcgattttcgttatatctggtgatcagtgcttcggaccaacattgttcagggggggggcaggggggcaagggaaaagagtagcgtgaagtttcctgcactgtattttggatgcttggtcggagaagaaaagagagaaatgaaatttttttcaagttgttttggcaaggattgtagcttAATTTCCCTTCCTTTCCGAAGTTCGGAAGTTTTTCAGAAAGGGTCTCTTTAAAAAGGGCTCAAAATTATGGTCAAAGTTATTGGTTTTCCTGCCTCACAGCAACGACAATATCATGCTAGTACTGAACTTTTTACAGACGAAAGCCCAAGGAAAGTGTTTCTTCCCTTTAGGAAACCTTTGAAGTTTTACTTCATTTTCGTATGAAACAACTCCGAATTTTGCAAACACTTTTTGCCGAGTTGAGTCTAAAGAAGCCCTGAAGGGGTTTTCAAGCCTCCTGAAAACCTAGAGCTTCTGAGATAGCGTATTCTTCAGCTCTATCATGGAAAGATCCTGGAAATTAGCGATTCCCATGTCTGAGTTTGGCTTTAGATTTTAAATTCTCTTTAGTAGTGGTCTTTTCATTGAGTTATTTATACCTATAAATACCGACTTTCTATTTATTAGTAACGCAGATTCTTTATAATTCTAGGTAGGTAAACTGCTAGTACGTATAATGACTGCGTTAGAAATCCTATTGAATTTAACAATACTAACTCAACAAAACGGACTTATTTCGACCTTCCTTTTCTGAAATCTATCATTTTCCGGACGCTGTTAGTTTTGTCGTCTCAGTTTTTCGAGGAGCCTACCCAATGATGCATTCAATGCTTTGAAGGATAACTTCCTTGTGTATTTGTGTTCAGTTGCAACAGCGTTGATCACTTTCGGAATTTTTGGCCTTGTCTTGGCTTCAGCATTTGGTAGTTTCGTTCATAACAAAGAAGGGCACGAGTCTCTAAAAGATGAAGATTTTGGAATCATAAATACCAGAATACAATGATTCGGGAAGTGTAAACTTATTGGTCTCGATATACTTAAAATAATCTCGCACAAATTGAGTGACTAGAATCTTAAAATCATTGTGNCAGTTTTTCGAGGAGCCTACCCAATGATGCATTCAATGCTTTGAAGGATAACTTCCTTGTGTATTTGTGTTCAGTTGCAACAGCGTTGATCACTTTCGGAATTTTTGGCCTTGTCTTGGCTTCAGCATTTGGTAGTTTCGTTCATAACAAAGAAGGGCACGAGTC

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18192 all species →	DNTTIP1_dimer	DNTTIP1 dimerisation domain	Domain	Interproscan
PF21229 all species →	TdIF1_2nd	TdIF1, C-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR041384 all species →	Domain	DNTTIP1, dimerisation domain	Interproscan
IPR026064 all species →	Family	Terminal deoxynucleotidyltransferase-interacting factor 1	Interproscan
IPR049121 all species →	Domain	TdIF1, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23399 all species →	DEOXYNUCLEOTIDYLTRANSFERASE TERMINAL-INTERACTING PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0031491 all species →	Molecular Function	nucleosome binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08707	DNTTIP1; deoxynucleotidyltransferase terminal-interacting protein 1	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.