Gene detail

Detailed information of scaffold36.g22.t1 in Aurelia aurita complex sp. Pacific

Genomic Location: scaffold36:273262...294204
NR annotation: no NCBI-NR hit recorded
Species Aurelia aurita complex sp. Pacific · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

scaffold36.g22.t1

acgacattggcttgtttataagagcactgcgtaggaactccgaggcttacaaatgaccacacagtcaccgtcttttgacgataaaagccctttagaatcggtagagttgatcattgcaaactccattgtttctgttttgaaaataggaaacaataaccacgacactggagcgatgtcggcggcatgagatgggctgccttcaattggatggtttctctctgatacgccgcgccattgttctcaaattctaaaagccaatgaaacctttgccgtttgaataactgtcttacgcagtgggacacataatttgacgatttcgatgcaagaccgcggttcttttgtgaacttaattggcatatatcagaatatatcagtgctgatgacgagcaacagctctccctgctccgtctcatcttcgccaacatctggctcttatcactcgctgcaaatattgtggaaacgagaattcagaagacgctaaacatcatacatacatatctacaaacatacatataagatgtcaggtgtcttctgtcctgtcatgcccttcgacataccaaatttgacgccgcaaggaacaccatcgtcaatggcatcaggatgtggtgtgccaaggaagcatcgaagagaaagaacaacattcacaaaaactcaactagagttgttagaaacactgttttcaaagacgcactacccagatatctttatgagagaagaagttgcaagcaaaataggattaccagagtcaagagttcagatatggttcaagaaccgacgagcaaaatatcgccaaattatgaacaaaaagaacccggcaaaggaaaagaagcaaaacccttaccaatttcgacccaacggtatgaacggaataatgcctcaacaactacatcatcagagtgcgtactgggcggcccctgcgggtttccaaggcttcccacgccctcctccgtcaatgcacacgcagttattcaaacctccttatagtgtgcagtcggaccaagaccaccaaagattctacccacgtgactatgcggcacaggcatcaggacactctggaaacgcacctttttggcaaagtaatgcgcattcgacggaaaggaactattattaccccgccgatagcagctcgaatggatcatattacaatggagaaacagtatcacccgagtattatgggaccaatatgtaatagtaacgttatgttcgtatagacagagcaaaactgcccaaaatgtcgtcatcctccatcaatcctgactcaaggaggtgctcgatcccataagctatttgaaaaaatatatcaagaattaagaagaaaatattttgggcttgaagcatatattttgctcggacttatgtagactgattaccaaagtcccttgtatgctgcggttaaccttgctcaactgttgaccgacgcgacatcgtcgagtcaaagagcagagggaaacaacagtcttgagataatcagtctaggagcaagggggctcaaactgacgacttgtcatgcatacgcctgcagtttctgctcttagttcgtgtatatagatccgtttggcgcataatttattacattttggtagtcagttattttagtcagagagatagaatacgttagaatcttagctgttgcgctttaacggcagtctgtcacgcatctgattggctgcaataaagtcagggctcaacggtggtgcagttatctaatctttctcctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncctttatatttataagcacagaggtttgaatttgaacttactgttttcctctcatccagaacttatatcaactcggaaaaatacacaacaggtccacttgctcccctttttggtctttcaagcttactgccagtgccagacacctatttctgatacacaaaacggaaaacgctgaaaacaagaaacttcctgctgtgcggtagccatcttactttctgataatcagaaagtcgaacgtcggcgcgcaaaggctctatcttgcacaggcccctttaaggcattcatcagcgtagacgtagaagtatgggagaagtatttagttgtagttcttagtcacagcagagtcgcagaatgaaaggaaaaattctatcaatttttagtaacaaagaagaattgtattggtttcatttgtttgatgcaactcccgttatttttatatatgctctatcgggtgtgataataattagaggctagtgataataatttgccttgaatcaatcggaaaccatctttatactagtcctcgattgttaacttgaagaaatatactttgttcgttgcattggaacaaggacgagttgtcattgttgacacctgaattcaaagcgattacccaatgcagacaaaggaaactccctcaaccagtaattcaaaacaaacaaagccacataag

Transcript

scaffold36.g22.t1

ACGACATTGGCTTGTTTATAAGAGCACTGCGTAGGAACTCCGAGGCTTACAAATGACCACACAGTCACCGTCTTTTGACGATAAAAGCCCTTTAGAATCGGTAGAGTTGATCATTGCAAACTCCATTGTTTCTGTTTTGAAAATAGGAAACAATAACCACGACACTGGAGCGATGTCGGCGGCATGAGATGGGCTGCCTTCAATTGGATGGTTTCTCTCTGATACGCCGCGCCATTGTTCTCAAATTCTAAAAGCCAATGAAACCTTTGCCGTTTGAATAACTGTCTTACGCAGTGGGACACATAATTTGACGATTTCGATGCAAGACCGCGGTTCTTTTGTGAACTTAATTGGCATATATCAGAATATATCAGTGCTGATGACGAGCAACAGCTCTCCCTGCTCCGTCTCATCTTCGCCAACATCTGGCTCTTATCACTCGCTGCAAATATTGTGGAAACGAGAATTCAGAAGACGCTAAacatcatacatacatatctacaaacatacataTAAGATGTCAGGTGTCTTCTGTCCTGTCATGCCCTTCGACATACCAAATTTGACGCCGCAAGGAACACcatcgtcaatggcatcaggatgtgGTGTGCCAAGGAAGCATCGAAGAGAAAGAACAACATTCACAAAAACTCAACTAGAGTTGTTAGAAACACTGTTTTCAAAGACGCACTACCCAGATATCTTTATGAGAGAAGAAGTTGCAAGCAAAATAGGATTACCAGAGTCAAGAGTTCAGATATGGTTCAAGAACCGACGAGCAAAATATCGCCAAATTATGAACAAAAAGAACCCGGCAAAGGAAAAGAAGCAAAACCCTTACCAATTTCGACCCAACGGTATGAACGGAATAATGCCTCAACAACTACATCATCAGAGTGCGTACTGGGCGGCCCCTGCGGGTTTCCAAGGCTTCCCACGCCCTCCTCCGTCAATGCACACGCAGTTATTCAAACCTCCTTATAGTGTGCAGTCGGACCAAGACCACCAAAGATTCTACCCACGTGACTATGCGGCACAGGCATCAGGACACTCTGGAAACGCACCTTTTTGGCAAAGTAATGCGCATTCGACGGAAAGGAACTATTATTACCCCGCCGATAGCAGCTCGAATGGATCATATTACAATGGAGAAACAGTATCACCCGAGTATTATGGGACCAATATGTAATAGTAACGTTATGTTCGTATAGACAGAGCAAAACTGCCCAAAATGTCGTCATCCTCCATCAATCCTGACTCAAGGAGGTGCTCGATCCCATAAGCTATTTGAAAAAATATATCAAGAATTAAGAAGAAAATATTTTGGGCTTGAAGCATATATTTTGCTCGGACTTATGTAGACTGATTACCAAAGTCCCTTGTATGCTGCGGTTAACCTTGCTCAACTGTTGACCGACGCGACATCGTCGAGTCAAAGAGCAGAGGGAAACAACAGTCTTGAGATAATCAGTCTAGGAGCAAGGGGGCTCAAACTGACGACTTGTCATGCATACGCCTGCAGTTTCTGCTCTTAGTTCGTGTATATAGATCCGTTTGGCGCATAATTTATTACATTTTGGTAGTCAGTTATTTTAGTCAGAGAGATAGAATACGTTAGAATCTTAGCTGTTGCGCTTTAACGGCAGTCTGTCACGCATCTGATTGGCTGCAATAAAGTCAGGGCTCAACGGTGGTGCAGTTATCTAATCTTTCTCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcctttatatttataagcacagaggtttgaatttgaacttactgttttcctctcatccagaacttatatcaactcggaaaaatacacaacaggtccacttgctcccctttttggtctttcaagcttactgccagtgccagacacctatttctgatacacaaaacggaaaacgctgaaaacaagaaacttcctgctgtgcggtagccatcttactttctgataatcagaaagtcgaacgtcggcgcgcaaaggctctatcttgcacaggccccttTAAGGCATTCATCAGCGTAGACGTAGAAGTATGGGAGAAGTATTTAGTTGTAGTTCTTAGTCACAGCAGAGTCGCAGAATGAAAGGAAAAATTCTATCAATTTTTAGTAACAAAGAAGAATTGTATTGGTTTCATTTGTTTGATGCAACTCCCGTTATTTTTATATATGCTCTATCGGGTGTGATAATAATTAgaggctagtgataataatttgccttgaatcaatcggaaaccatctttatactagtcctcgattgttaacttgaagaaatatactttgttcgttgcattggaacaaggacgagttgtcattgttgacacctgaattcaaagcgattacccaatgcagacaaaggaaactccctcaaccagtaattcaaaacaaacaaagccacataag

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00046 all species →	Homeodomain	Homeodomain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001356 all species →	Domain	Homeobox domain	Interproscan
IPR000047 all species →	Conserved_site	Helix-turn-helix motif	Interproscan
IPR017970 all species →	Conserved_site	Homeobox, conserved site	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45793 all species →	HOMEOBOX PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K18490	OTX2; homeobox protein OTX2	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.