Gene detail

Detailed information of scaffold365.g4.t1 in Morbakka virulenta

Genomic Location: scaffold365:133556...191323
NR annotation: XP_050402330.1, peptidyl-glycine alpha-amidating monooxygenase B isoform X1 [Patella vulgata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

scaffold365.g4.t1

AGTTATTTCCCTAGTACTCAATAGATTTATTGTGTTTGAAAAATCATTGACCTATCTGATATGCATGAAACTTTCGGAATGTGCAGAAGAATATTTATGCAAATATGTAGAGGCACCTAGAAGAAAAAATTACATAGTAAAGATTGAAGCAGTTGCGTCCATGAAGACTGCACATCATATATTAGTGTTTGCATGTAAAGAACCAGGCAGAAGAAGAAATGTGTGGGACTGTGGACGTGAACCAGAATGTAGTGGAGACTCCCAACAAATTCTGTACGCATGGGCAAAAAATGCAAAGCCTTTGAAGTTACCCAAAGATGTTGGATTTCCGATTGGAGGAAAAAGGGGCCTGGGTTATATTGTTATGCAAGTCCATTATGCGAGGGCACTAAAACCACACCAAGAAAAGTATAAACGCTTGCTAGATAGATTTAAACCAATATCTACTAAACTTGGACTGCCTAAAGTAGCTGGAATACTCTTGTTTGTGTCATCTGATGCACGTATCCCCCCGCACACAAAAGGCTACCACAGTGATATGTATTGCAAGTACGAGAGCAAGCAAGACATAACGCCTTTTGCTTATAGAACACATACGCATGCATTGGGGAGATCAGTTTCTGCATACGTCATCAAGAATGATAAATGGTTTCTCATTGGTATAGGTAACCCACAGCGGCCACAAGATGACCGCACCCTTGTCGTGGATGGGAAATGGCCGTACAGTCTTAAAGAGTATGAAAACATCGGTGAAGTAAGTGCAGTTGGAGTGGCGTCTGACGGAGACGTAGTTTTCTTCCACAGGGGACCAAGACAGTGGAAAGACGACACCTTTGATGAGCATTACAGACTGCGACCTGATATTGAGCCAATAAAAGTGCCAACCGTGTATCATGTTAATCATAAAAGTGGAAAGATAGTCAAGAAATGGGGAGATGATTTGTTCTACATCCCTCATGGGTTAACAATAGATTCAGATGATAATATTTGGCTAACGGATGTAGGAGCACATCAGGTTTTCAAGTTTAACCGTGACAATGTTGAAGTACCCGCGCTCACTCTTGGGCGTGCATTGATACCTGGGAATGGGAGGCATCATTTTTGTCAGCCATCTGATGTTGCAGTTGAAAAATCTGGAGTTTTTTATGTAGCTGATGGGTACTGCAACAGCCGTATTATGAAATTTTCGTCGAAAGGAGAATTGCTTCTGTTTTGGGGGAGGAGAAATAGTAATATGTATGCGAAAAGTAGAGTACCTGGGGAGTTCAGTGTTCCACATAGCTTAGCAATAGATGAGGCAAAAAAACTATTGTTTGTGGCTGACAGAGAAAACGGACGAATCCAATGCTTCAGTACAGATGGAAATTACAATTATGATATTGTCCATCGTGAATTTGACCGTATATTTGCAGTGAGCTTTAGTCCAGCAAATGGTGGAATTTTATACGCAATAAATAATCCATCGAACAAAAAAGGTTACCCGGAAGGCTTTACTCTTAAGGCGAAAAGCGGGAAAATCGTTGGAAGGTGGTCACCTATTGTAGCGGGATTCAGCCAGCCCCATGATGTGTGCCATAGTAGGAAAGAAAATGCAGTCTATGTTACAGAAACTGGCCCTAACCGGGTCTGGAAATTCATCAAAAGAGTGGTGGATACAAAAGAAGTAAAGCCGGAAAAAATATTAGAAAGTCGAAACGACACAGCAGTTGATGTGAGTGTTATCAATGCATTGAGTGACCCGAGTGTTATTCCTGCAGTCGTCGTTGTGGTGGTACTGGCAACGCCCATCAGTCTCATATGTATCGCAGCTGTCATTCAACATTTACGGCTTAAACACAAAAGAACAAAAGCAATACGAAAGCGGGACCAAAATTCGAACTTATCACGAGATCGAGGCTGTATGTTTTGTTGTTATACGCCAAAATATTATTATGACTCAAAACGAGGATTTGATAAACTTATTGGAGAGCTCAGCGATTCCGAAGACGATCTTTTTGCAAAGGGCTCGACTTGAATAATTTTTTACGTCATCGTCGAAAAATCATGGTTATCCTCGTCAATATTTGTATATATGGTAGAATTTTATACATACTGACAACAACACATGTCGTCGTGATTCTAAATTTCCACGATATGGCAAGAAGAAAAATATTCAGAACACTTTTTTAGTTCGGGTTTAAAGAAAAGGCCCTGGCGTCTTTCAAAACAGATGATGAGTAATAACCACATGGCTAATTACCTTACAGATAATTACAACATGGGTTATAACCACAGGGGCATTTGGCACTTGAGTAATTATCATGATATCACAGTCGTTTTTTGTTGGATAGAAAAAAGTGGGCAACATCAGAATTTTCATGTTGTTGTTGCTGCGGTGAATATTGTGCCTGATTATTACCGACCTGAAGGAAGTTTTAAAGAATGCTGGTATTATGTGAACAGTTACATTGTATGAAACGATGTGTGACTGTAAAAGTGAGGCGCAGTACGTGTGTGCCACTGTCGATCCTGCAGGGTTTATGCCCAATATTTTGGAAGCTTTTTGTCAGTAATTGACTATTTGGGTTTGCTTTGCCTTTATAACCATATATATGTCATTTGTTTACGTCTTACGACTTCTCATGGAAGTTTAATCAGCTATGCGTGATTGACGTTTCTCGTAGCAAAAGTCTTGTTCTTCTTGACAGTGTTTTATCACTTCAGATTATTTTCAAATGGTAACCTTTTGGTGGTTGTCATTTGAACCTAAGTCGTTTTTGATGCATTTGTTGTTCACCAAATCTTGTAAACCACTTGTCTTTGTTGATACTGCTAACATTTACTGGGTATTGAGCTTCATTAGATTCTTGTACACAGGGCATAGTATTACATAAAATAATTTGTATATTGACCTCACTGGAAAAAACGTCTATCTCTTCCTAAATGAAATATATGTTCCAATGTTAAAAAAATGATTCACGGTTAATTAGTAAAGTCAGTTTTATCAAGTATAAAAAGTTTAATATCCTTATTACGGTTAAAGTAGCGGTCTACTCGCTTAGATTTTGCGCCATGTTTACACATGCAACTTTTCAATAAAAATACCATTTTTTAACAAAGAGAGGACGAAACTGTCATTTTTATTTTGGATATTAAACAGCCGAAAAACAGTGGTAGTCGTAAGGACATTTTTTCTTTGCACAGTTATTTTAGAATCCACCCATGATGGTTTGCAAACTTTAGTAAATGAAATGTTTAgag

Protein

Uniprot

Uniprot term	Description
P08478	Peptidyl-glycine alpha-amidating monooxygenase A OS=Xenopus laevis OX=8355 GN=pam-a PE=1 SV=3
P12890	Peptidyl-glycine alpha-amidating monooxygenase B OS=Xenopus laevis OX=8355 GN=pam-b PE=2 SV=1
P10731	Peptidyl-glycine alpha-amidating monooxygenase OS=Bos taurus OX=9913 GN=PAM PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01436	NHL	NHL repeat	Repeat	Interproscan
PF03712	Cu2_monoox_C	Copper type II ascorbate-dependent monooxygenase, C-terminal domain	Domain	Interproscan
PF01082	Cu2_monooxygen	Copper type II ascorbate-dependent monooxygenase, N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001258	Repeat	NHL repeat	Interproscan
IPR008977	Homologous_superfamily	PHM/PNGase F domain superfamily	Interproscan
IPR024548	Domain	Copper type II ascorbate-dependent monooxygenase, C-terminal	Interproscan
IPR000323	Domain	Copper type II, ascorbate-dependent monooxygenase, N-terminal	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR036939	Homologous_superfamily	Copper type II, ascorbate-dependent monooxygenase, N-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10680	PEPTIDYL-GLYCINE ALPHA-AMIDATING MONOOXYGENASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0005576	Cellular Component	extracellular region	Interproscan
GO:0004497	Molecular Function	monooxygenase activity	Interproscan
GO:0005507	Molecular Function	copper ion binding	Interproscan
GO:0016715	Molecular Function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced ascorbate as one donor, and incorporation of one atom of oxygen	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K24006	PAM; peptidylglycine monooxygenase / peptidylamidoglycolate lyase	EC:1.14.17.3 EC:4.3.2.5	Enzymes with EC numbers	-	deepkoala